genome.fa.s23.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  136  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45537033--45537090	30	1.9	30	82	6	73	22	32	25	18	1.97
45541988--45542186	35	5.7	35	86	0	263	29	13	26	31	1.93
45544856--45544956	55	1.9	53	84	11	138	39	14	15	29	1.88
45548406--45548437	12	2.7	12	95	0	55	46	0	3	50	1.17
45559260--45559421	35	4.6	35	84	1	200	30	12	24	32	1.93
45564397--45564427	4	7.8	4	100	0	62	51	22	0	25	1.48
45570755--45570874	49	2.4	49	83	0	132	27	20	17	35	1.95
45588058--45588086	9	3.2	9	100	0	58	34	34	10	20	1.87
45597024--45597242	46	4.7	46	77	9	212	21	18	27	31	1.97
45600952--45600992	14	2.9	14	77	0	55	36	31	9	21	1.86
45602131--45602460	4	82.5	4	98	0	606	48	24	1	25	1.61
45602878--45602919	19	2.2	19	91	8	68	42	0	4	52	1.22
45604439--45604629	90	2.1	90	92	0	310	39	9	17	32	1.83
45608522--45608607	45	1.9	45	100	0	172	30	23	12	33	1.92
45610499--45610626	64	2.0	64	98	0	247	35	17	8	39	1.80
45617381--45617498	4	29.5	4	92	0	200	48	24	1	25	1.61
45625451--45625489	13	2.9	13	80	3	51	43	10	0	46	1.37
45626061--45626085	13	1.9	13	100	0	50	0	12	0	88	0.53
45626103--45626286	96	1.9	97	84	1	244	33	27	13	26	1.93
45640977--45641162	40	4.7	41	83	7	222	22	22	29	25	1.99
45640979--45641162	80	2.3	79	89	2	278	22	22	28	26	1.99
45642878--45642935	8	8.3	7	75	17	50	72	0	5	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45642876--45642948	20	4.2	19	78	18	79	75	0	5	19	0.99
45642876--45642945	27	2.7	24	76	23	79	74	0	5	20	1.02
45643417--45643599	93	2.0	93	91	0	294	27	26	17	28	1.98
45646664--45646713	10	5.0	10	83	9	57	68	2	6	24	1.23
45646727--45646764	13	2.8	13	88	4	58	44	15	0	39	1.47
45652008--45652153	43	3.4	43	80	1	168	28	29	17	23	1.97
45658179--45658242	3	20.3	3	73	20	51	37	1	0	60	1.06
45658182--45658372	50	3.9	49	70	20	152	37	3	1	58	1.23
45658269--45658322	13	4.3	13	75	15	51	37	0	1	61	1.07
45658269--45658319	27	2.0	25	92	7	84	37	0	1	60	1.08
45662438--45662467	14	2.1	14	93	0	51	36	6	10	46	1.64
45662487--45662523	15	2.5	16	87	12	53	21	24	10	43	1.84
45668337--45668490	28	5.5	28	97	0	274	33	28	11	25	1.91
45676329--45676398	27	2.6	27	95	2	113	31	28	12	27	1.93
45676329--45676426	28	3.5	28	90	2	135	31	28	13	26	1.94
45681837--45682386	206	2.7	204	87	4	797	31	18	21	29	1.97
45686544--45687093	206	2.7	204	87	4	797	31	18	21	29	1.97
45689077--45689141	7	9.0	7	94	5	112	29	0	1	69	0.98
45689730--45689772	15	3.0	15	83	6	54	46	32	0	20	1.51
45689735--45689821	22	4.0	22	67	7	52	45	31	0	22	1.53
45689796--45689835	7	5.7	7	87	0	62	47	35	0	17	1.48
45689796--45689840	14	3.2	14	93	0	63	48	31	0	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45689934--45690113	7	24.7	7	70	12	78	41	37	0	20	1.57
45689935--45690066	21	6.2	22	74	11	87	41	38	0	18	1.56
45690425--45690536	39	2.8	39	78	7	127	26	18	24	30	1.98
45690322--45690723	180	2.2	182	83	6	490	31	20	20	27	1.97
45700146--45700173	5	5.6	5	100	0	56	17	0	0	82	0.68
45702693--45702744	26	2.0	26	84	0	68	55	13	9	21	1.66
45704501--45704608	49	2.2	48	85	1	135	29	25	12	32	1.93
45704519--45704638	49	2.4	49	84	0	141	27	21	16	34	1.95
45705462--45705501	19	2.0	20	90	4	64	45	0	7	47	1.31
45711744--45711826	38	2.2	38	93	0	139	16	46	12	24	1.81
45713320--45713347	5	5.6	5	100	0	56	17	0	0	82	0.68
45715867--45715918	26	2.0	26	84	0	68	55	13	9	21	1.66
45717675--45717782	49	2.2	48	85	1	135	29	25	12	32	1.93
45717693--45717812	49	2.4	49	84	0	141	27	21	16	34	1.95
45718636--45718675	19	2.0	20	90	4	64	45	0	7	47	1.31
45726929--45726958	15	2.0	15	93	0	51	23	6	46	23	1.75
45730319--45730349	15	2.1	15	100	0	62	38	6	32	22	1.80
45730506--45730544	18	2.3	17	86	8	53	38	5	12	43	1.65
45733365--45733392	5	5.6	5	100	0	56	17	0	0	82	0.68
45735912--45735963	26	2.0	26	84	0	68	55	13	9	21	1.66
45737720--45737827	49	2.2	48	85	1	135	29	25	12	32	1.93
45737738--45737857	49	2.4	49	84	0	141	27	21	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45738681--45738720	19	2.0	20	90	4	64	45	0	7	47	1.31
45744963--45745045	38	2.2	38	93	0	139	16	46	12	24	1.81
45746539--45746566	5	5.6	5	100	0	56	17	0	0	82	0.68
45749086--45749137	26	2.0	26	84	0	68	55	13	9	21	1.66
45750894--45751001	49	2.2	48	85	1	135	29	25	12	32	1.93
45750912--45751031	49	2.4	49	84	0	141	27	21	16	34	1.95
45751855--45751894	19	2.0	20	90	4	64	45	0	7	47	1.31
45762959--45763376	40	10.5	40	92	1	653	27	28	22	22	1.99
45779403--45779604	68	3.0	68	94	0	350	24	23	24	28	2.00
45785416--45785478	32	2.0	32	93	0	108	36	6	23	33	1.80
45788045--45788280	129	1.8	129	80	1	285	27	15	23	33	1.95
45788045--45788379	43	7.6	43	76	5	256	27	17	23	31	1.97
45788261--45788361	52	1.9	52	81	0	121	31	18	23	25	1.98
45789985--45790113	69	1.9	69	91	3	215	37	23	6	33	1.80
45789985--45790113	23	5.6	23	86	3	170	37	23	6	33	1.80
45789986--45790135	23	6.5	22	83	8	149	36	23	6	34	1.81
45789985--45790145	69	2.3	70	83	6	177	37	23	6	32	1.80
45789986--45790158	46	3.8	46	82	6	127	36	23	5	33	1.79
45790302--45790343	19	2.2	20	82	4	50	57	0	2	40	1.12
45790602--45790632	10	3.1	10	95	0	53	64	0	0	35	0.94
45791041--45791140	25	4.0	25	93	0	164	30	17	42	11	1.83
45792871--45792911	21	2.0	21	85	0	55	9	26	9	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45794536--45794573	18	2.1	18	90	5	58	47	2	42	7	1.46
45794507--45794655	72	2.1	72	86	5	203	44	4	38	12	1.62
45795240--45795273	7	4.7	7	85	7	50	47	29	0	23	1.52
45795560--45795608	24	2.0	24	100	0	98	42	4	0	53	1.20
45795567--45795612	12	3.9	12	80	2	58	43	4	0	52	1.21
45796194--45796332	41	3.4	40	79	9	138	22	17	17	41	1.90
45803408--45803442	18	1.9	18	94	0	61	31	25	14	28	1.95
45805082--45805115	16	2.1	17	88	5	52	29	23	5	41	1.78
45817037--45817079	20	2.1	21	87	12	63	69	0	0	30	0.88
45817025--45817068	13	3.3	13	82	14	54	70	0	0	29	0.88
45820307--45820848	278	1.9	278	100	0	1084	29	14	9	46	1.76
45823780--45823917	44	3.1	44	82	3	161	25	22	19	32	1.97
45823799--45824032	44	5.2	44	72	10	168	24	20	20	34	1.97
45823879--45824096	93	2.3	94	85	3	280	26	19	19	33	1.96
45823883--45824100	94	2.3	93	85	3	278	26	19	19	34	1.96
45823956--45824127	94	1.8	95	81	6	215	29	21	16	32	1.95
45824132--45824281	44	3.3	44	75	14	135	28	16	22	33	1.95
45830459--45830526	25	2.8	24	76	12	68	17	20	23	38	1.93
45830708--45830765	25	2.4	25	80	8	66	18	32	17	31	1.94
45831247--45831285	16	2.4	16	95	0	69	17	12	41	28	1.87
45831649--45831680	5	6.4	5	100	0	64	59	0	0	40	0.97
45832091--45832135	21	2.1	22	87	4	65	71	4	4	20	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45832379--45832430	19	2.7	20	79	5	54	69	1	7	21	1.24
45835742--45836587	54	15.7	54	99	0	1640	35	22	23	18	1.96
45838182--45838289	26	4.2	26	87	0	162	37	25	7	30	1.83
45845451--45845542	44	2.1	45	95	2	168	43	16	13	27	1.84
45853315--45853808	247	2.0	247	92	0	819	28	23	10	37	1.89
45861196--45861396	106	1.9	107	96	1	377	47	22	7	22	1.76
45864727--45867298	153	16.8	153	86	2	3256	37	18	10	34	1.84
45867442--45867471	12	2.5	12	100	0	60	26	16	16	40	1.90
45868516--45868839	48	6.8	48	75	4	271	28	19	28	23	1.98
45868510--45868839	96	3.4	96	88	0	464	28	18	28	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167