genome.fa.s23.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  75  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23814066--23814111	20	2.3	20	100	0	92	17	32	36	13	1.88
23827637--23827760	45	2.8	45	88	0	167	33	28	14	23	1.94
23829943--23830009	34	2.0	34	93	0	116	29	13	17	38	1.88
23830137--23830266	27	4.9	27	76	3	102	37	20	10	31	1.87
23830139--23830309	81	2.1	81	78	7	179	38	18	12	30	1.89
23830246--23830306	27	2.3	27	94	0	104	39	16	16	27	1.90
23830449--23830523	27	2.8	25	79	15	80	24	24	18	33	1.97
23830714--23830798	33	2.6	33	86	0	116	23	18	28	29	1.98
23835389--23835425	17	2.1	19	85	10	51	35	24	8	32	1.85
23842654--23842814	38	4.2	38	84	7	184	22	23	24	29	1.99
23842645--23842814	76	2.2	77	82	6	211	23	22	24	28	1.99
23857528--23857789	90	2.9	90	93	0	416	29	14	26	29	1.95
23857650--23857789	45	3.1	45	65	15	126	31	15	25	27	1.95
23857858--23858879	90	11.2	90	87	3	1375	29	13	26	30	1.94
23857887--23858125	45	5.3	45	67	13	152	30	12	25	30	1.93
23857460--23858119	330	2.0	330	96	0	1212	30	14	27	28	1.95
23859700--23859760	27	2.4	27	81	8	74	34	0	0	65	0.93
23859737--23859774	19	2.0	19	94	0	67	34	0	0	65	0.93
23859801--23859854	11	5.0	11	78	13	58	27	1	3	66	1.19
23859734--23859853	47	2.5	51	75	15	119	35	1	2	60	1.20
23859891--23859926	7	5.0	7	86	6	54	30	0	0	69	0.89
23862104--23862284	56	3.2	56	90	0	272	37	23	11	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23864355--23864537	40	4.6	40	92	2	264	23	22	27	26	1.99
23864355--23864570	40	5.4	40	88	6	248	24	21	27	26	1.99
23866455--23866637	91	2.0	91	98	0	357	22	21	21	34	1.97
23870271--23870349	27	3.0	27	79	5	81	25	24	16	34	1.95
23870536--23870619	33	2.6	33	86	1	116	25	17	27	29	1.98
23870503--23870638	33	4.3	33	76	10	113	23	19	26	30	1.98
23874054--23874095	17	2.3	18	84	12	59	16	28	35	19	1.93
23875120--23875156	17	2.1	19	85	10	51	35	24	8	32	1.85
23882394--23882553	38	4.2	38	85	4	207	20	21	25	31	1.98
23897033--23897950	90	10.2	90	90	1	1365	30	13	26	29	1.94
23902798--23902973	40	4.4	39	86	6	221	24	21	27	26	1.99
23903250--23903275	12	2.2	12	100	0	52	7	15	30	46	1.74
23903331--23903427	41	2.4	41	89	1	151	38	23	22	15	1.92
23903584--23903681	7	13.4	7	73	8	70	26	1	24	47	1.58
23903592--23903676	21	3.9	21	80	11	107	27	1	25	45	1.61
23903599--23903692	46	2.0	46	95	0	170	28	2	25	43	1.66
23903620--23903755	25	5.6	25	70	15	88	27	1	27	43	1.64
23903814--23904163	115	3.0	115	100	0	700	38	5	17	38	1.72
23904183--23904286	7	14.7	7	70	8	59	21	0	30	48	1.51
23904207--23904360	14	10.9	14	66	16	50	23	0	35	41	1.55
23904226--23904295	28	2.5	28	86	6	88	20	0	35	44	1.52
23904236--23904294	15	4.1	15	78	6	59	18	0	35	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23904243--23904359	36	3.3	36	78	7	105	23	0	36	39	1.55
23904274--23904365	35	2.6	34	80	8	96	27	0	35	36	1.57
23904243--23904360	7	16.6	7	71	10	62	23	0	37	38	1.55
23904543--23904693	77	2.0	76	92	3	250	55	9	8	26	1.60
23904823--23904866	18	2.4	18	85	7	54	22	40	0	36	1.54
23906776--23906831	23	2.5	22	72	8	60	33	16	25	25	1.95
23909073--23909106	17	1.9	18	94	5	61	35	11	29	23	1.90
23912386--23912442	26	2.2	26	80	3	60	28	19	17	35	1.94
23914400--23914424	13	1.9	13	100	0	50	72	0	0	28	0.86
23919645--23919701	26	2.2	26	83	3	69	26	19	19	35	1.95
23919979--23920017	20	1.9	21	89	5	62	25	28	17	28	1.98
23923886--23923942	26	2.2	26	81	9	62	28	19	17	35	1.94
23927360--23927460	28	3.6	29	81	5	118	27	15	29	26	1.96
23927347--23927457	56	2.0	57	85	5	154	28	14	28	27	1.95
23929631--23929770	47	2.9	49	84	6	189	27	31	8	32	1.87
23933424--23933584	40	4.1	39	76	8	137	27	28	20	23	1.99
23933448--23933588	40	3.6	39	80	1	158	26	27	21	24	1.99
23933448--23933597	80	1.9	78	81	2	183	26	28	20	25	1.99
23934708--23934746	20	2.0	20	90	10	62	25	7	0	66	1.18
23940101--23940260	85	1.9	85	83	11	211	24	18	25	31	1.98
23940104--23940260	43	3.7	41	77	12	156	24	18	25	31	1.98
23942571--23942729	43	3.7	43	78	10	164	23	20	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23948336--23948399	28	2.3	28	88	0	92	20	17	35	26	1.94
23948715--23948921	81	2.6	81	92	0	333	39	22	9	28	1.85
23948728--23948921	27	7.2	27	89	0	271	38	23	8	29	1.85
23948728--23948947	81	2.7	81	88	1	325	38	23	10	28	1.87
23950527--23950600	34	2.2	34	90	2	114	31	20	21	27	1.98
23955647--23955764	43	2.8	41	77	13	123	24	18	26	30	1.98
23959956--23960260	40	7.7	40	85	1	337	25	22	25	26	2.00
23960153--23960285	40	3.4	38	80	8	133	24	24	27	23	2.00
23966515--23966662	40	3.7	41	86	3	176	27	26	19	27	1.99
23985010--23985194	79	2.3	81	83	7	227	24	27	22	24	2.00
23985010--23985194	40	4.7	40	82	7	225	24	27	22	24	2.00
23988230--23988259	8	3.6	8	95	4	51	13	0	20	66	1.24
23988688--23988821	43	3.1	42	81	11	139	24	16	25	33	1.96
23994595--23994772	40	4.5	40	92	3	272	24	23	28	24	2.00
24018176--24018233	29	2.0	29	100	0	116	41	10	10	37	1.73
24030779--24030833	22	2.5	22	82	11	67	40	23	7	29	1.81
24031497--24031643	43	3.4	43	80	4	163	32	25	15	26	1.95
24034544--24035014	235	2.0	235	94	0	816	30	26	13	28	1.94
24039641--24039784	48	3.0	48	84	0	180	28	18	22	30	1.97
24043905--24044035	27	4.9	27	87	0	181	25	13	18	42	1.87
24044357--24044391	18	1.9	18	88	0	52	22	22	11	42	1.85
24051335--24051471	29	4.8	29	82	4	152	28	27	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24051332--24051484	58	2.7	57	84	2	189	28	28	14	28	1.95
24055830--24055856	14	1.9	14	100	0	54	14	18	14	51	1.76
24058151--24058220	36	1.9	36	100	0	140	35	17	8	38	1.80
24076516--24076627	42	2.7	43	78	14	126	32	25	17	25	1.97
24079660--24079756	49	2.0	49	97	0	185	41	21	11	25	1.87
24081472--24081505	18	1.9	18	88	5	52	29	14	14	41	1.86
24082745--24082838	28	3.4	28	83	0	125	25	31	15	26	1.96
24097150--24097196	13	3.6	13	94	0	85	14	34	27	23	1.94
24098728--24098912	40	4.7	39	84	4	228	24	22	27	25	2.00
24098725--24098935	40	5.3	40	82	7	216	25	22	27	25	2.00
24098725--24098935	79	2.7	79	80	6	266	25	22	27	25	2.00
24108603--24108647	23	2.0	23	100	0	90	37	26	22	13	1.91
24108603--24108664	23	2.7	23	89	0	79	37	25	22	14	1.92
24110349--24110582	55	4.4	53	75	9	201	35	18	23	22	1.96
24110359--24110556	108	1.8	110	84	4	276	33	17	25	23	1.96
24115404--24115457	28	2.0	28	88	3	83	42	3	3	50	1.38
24122045--24122087	20	2.2	20	83	8	52	37	13	0	48	1.43
24124826--24124870	7	6.4	7	81	0	54	33	0	46	20	1.51
24125815--24125848	16	2.1	16	100	0	68	23	23	26	26	2.00
24127622--24127666	18	2.3	19	81	14	56	48	0	4	46	1.22
24137466--24137650	40	4.7	39	79	9	196	24	22	28	25	1.99
24137461--24137650	79	2.4	82	85	7	248	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24137467--24137683	79	2.7	77	80	10	197	25	22	28	23	1.99
24145650--24145834	40	4.7	39	77	9	178	25	22	27	25	2.00
24145645--24145834	79	2.4	82	83	9	232	25	21	27	25	1.99
24145651--24145867	79	2.7	77	80	10	188	26	22	27	23	2.00
24153600--24153861	39	6.7	40	87	7	337	25	22	27	24	2.00
24162201--24162260	28	2.1	29	84	12	79	41	0	3	55	1.16
24162485--24162519	17	2.1	17	94	0	61	48	11	2	37	1.54
24187998--24188174	46	3.8	46	92	1	257	40	15	23	20	1.91
24192725--24193043	40	8.0	40	96	0	575	20	22	30	26	1.98
24193207--24193261	25	2.2	25	87	6	76	30	12	29	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167