genome.fa.s23.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  111  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37124751--37125252	48	10.6	47	73	11	300	28	17	29	25	1.97
37124796--37125252	92	4.8	93	73	12	317	28	17	29	25	1.97
37124796--37125151	140	2.5	140	96	1	640	28	16	30	24	1.97
37130368--37130933	275	2.1	275	98	0	1105	37	19	14	28	1.91
37143339--37143417	39	2.0	39	90	0	122	24	18	22	34	1.97
37144628--37144762	43	3.1	44	80	6	166	24	16	29	29	1.96
37144645--37144762	45	2.7	43	80	6	148	26	16	28	28	1.97
37145032--37145267	38	6.2	38	87	2	289	22	22	25	30	1.99
37145032--37145267	114	2.1	114	86	4	325	22	22	25	30	1.99
37145260--37145385	45	2.8	45	89	2	182	20	22	28	28	1.98
37150026--37150097	36	2.0	36	100	0	144	36	22	8	33	1.84
37154233--37154278	18	2.6	18	86	3	58	67	10	0	21	1.21
37158010--37158038	13	2.2	13	100	0	58	34	13	6	44	1.71
37159946--37159982	18	2.0	18	89	5	56	0	18	2	78	0.87
37165072--37165153	25	3.3	25	84	0	101	21	23	20	34	1.97
37179500--37179703	56	3.7	55	84	4	254	34	24	14	26	1.93
37182549--37182591	15	3.0	14	83	12	52	4	20	2	72	1.14
37183990--37184035	20	2.3	21	82	14	62	26	17	28	28	1.98
37184028--37184175	60	2.5	59	83	10	169	27	19	26	27	1.99
37186481--37186572	34	2.6	34	79	3	94	31	25	25	18	1.98
37187142--37187227	42	2.1	41	84	6	111	13	22	17	46	1.83
37187142--37187243	42	2.5	42	80	1	98	14	20	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37202477--37202530	23	2.2	25	87	6	76	62	7	24	5	1.42
37202427--37202530	24	4.2	23	76	12	59	58	6	28	5	1.47
37208784--37208854	36	2.0	36	97	0	133	42	5	25	26	1.77
37216155--37216247	48	1.9	48	97	0	177	33	31	12	22	1.92
37218856--37218927	33	2.1	34	82	5	83	26	25	23	25	2.00
37218856--37218949	29	3.1	29	76	17	86	26	25	24	23	2.00
37221543--37221573	15	2.0	16	93	6	55	45	6	32	16	1.72
37232926--37233090	41	4.0	41	76	6	147	27	27	21	23	1.99
37242887--37242922	15	2.4	15	90	0	54	47	2	2	47	1.31
37243228--37243326	49	2.0	49	100	0	198	30	14	20	35	1.92
37245363--37245416	24	2.2	24	96	0	99	40	1	11	46	1.50
37245375--37245429	24	2.5	22	88	8	76	38	0	12	49	1.41
37249941--37250032	45	2.0	45	100	0	184	54	13	8	23	1.66
37251852--37251887	15	2.3	15	90	4	54	25	0	25	50	1.50
37264837--37264906	30	2.3	30	90	4	106	15	15	24	44	1.86
37266763--37266824	20	3.3	20	67	28	64	35	24	20	19	1.96
37266753--37266824	35	2.1	35	100	0	144	34	23	19	22	1.96
37272277--37272495	46	4.7	45	78	11	196	26	17	29	26	1.98
37278028--37278196	46	3.7	44	74	12	142	30	18	27	23	1.98
37278074--37278252	94	1.9	94	82	2	225	28	18	26	25	1.98
37300586--37300747	48	3.4	48	81	6	186	29	19	25	25	1.99
37300581--37300714	46	2.9	47	83	6	182	31	17	26	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37308053--37308201	41	3.6	41	85	3	183	30	14	32	22	1.94
37328441--37328466	5	5.2	5	100	0	52	61	0	0	38	0.96
37330701--37330756	28	2.0	28	100	0	112	32	3	28	35	1.74
37330704--37330764	28	2.2	28	93	0	104	39	3	26	31	1.72
37335412--37335455	23	1.9	23	90	0	70	11	15	22	50	1.76
37338562--37338591	15	2.1	14	93	6	51	83	0	0	16	0.65
37338562--37338591	7	4.1	7	91	8	51	83	0	0	16	0.65
37339178--37339232	13	4.5	13	82	13	80	38	0	12	49	1.41
37339191--37339235	23	2.0	23	100	0	90	40	0	13	46	1.43
37339449--37339539	44	2.1	44	97	0	173	42	16	14	26	1.86
37349941--37349998	30	1.9	30	86	6	82	29	6	6	56	1.51
37359080--37359277	41	4.8	40	84	9	215	26	25	20	27	1.99
37359080--37359277	82	2.4	80	85	6	238	26	25	20	27	1.99
37366300--37366506	53	3.8	54	74	4	184	19	23	17	39	1.93
37369611--37369657	23	2.0	23	91	0	76	29	8	36	25	1.86
37384048--37384139	46	2.0	46	91	0	148	19	16	19	44	1.87
37387880--37387931	27	2.0	26	84	3	68	17	26	21	34	1.95
37387884--37388145	98	2.7	98	98	1	499	20	25	20	33	1.97
37394483--37394796	6	50.8	6	74	16	250	48	14	18	18	1.82
37394495--37394774	37	8.4	37	69	24	192	47	15	18	18	1.83
37394534--37394795	62	4.2	62	99	0	506	47	15	19	18	1.83
37394525--37394733	25	8.4	25	82	7	186	47	15	18	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37395211--37395562	27	13.0	28	85	5	435	25	21	17	35	1.95
37395629--37395693	27	2.4	27	84	0	85	33	13	16	35	1.89
37395619--37396127	81	6.3	81	79	5	260	30	8	20	40	1.82
37395672--37396147	27	17.6	27	83	1	560	30	7	20	41	1.80
37400824--37400851	13	2.2	13	100	0	56	25	21	0	53	1.46
37403126--37403165	20	2.0	20	100	0	80	35	15	25	25	1.94
37413273--37413310	20	1.9	20	89	10	60	39	5	7	47	1.55
37420065--37420387	167	1.9	167	87	2	470	39	17	13	30	1.87
37422276--37422430	57	2.7	57	81	6	195	31	21	16	30	1.95
37422674--37422711	19	2.0	19	94	0	67	26	18	10	44	1.82
37424853--37424938	27	3.2	27	85	9	122	34	23	23	18	1.96
37432717--37432864	43	3.4	43	80	1	163	28	16	23	31	1.96
37434333--37434371	10	3.9	10	87	12	62	71	2	7	17	1.21
37434386--37434425	14	2.9	14	81	11	55	47	12	0	40	1.41
37438178--37438208	15	2.1	15	93	0	53	38	3	6	51	1.44
37440690--37440761	36	2.0	36	86	10	103	20	19	20	38	1.93
37445280--37445490	39	5.4	39	87	1	282	35	25	12	27	1.91
37446388--37446443	31	1.9	30	85	10	80	23	12	7	57	1.60
37452051--37452104	22	2.3	23	84	6	65	20	18	16	44	1.87
37454273--37454326	19	3.0	18	77	17	67	11	1	11	75	1.11
37459787--37460297	255	2.0	255	99	0	1013	40	18	18	22	1.91
37466739--37466876	70	2.0	71	89	1	215	36	17	17	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37467110--37467139	16	1.9	15	93	6	51	16	13	10	60	1.59
37473127--37473175	24	2.0	25	84	8	64	2	16	6	75	1.09
37473137--37473207	30	2.2	30	82	14	79	7	18	5	69	1.32
37474014--37474091	21	3.7	21	78	0	84	41	5	16	37	1.71
37478821--37478960	16	9.1	15	67	18	67	57	0	8	32	1.34
37478819--37478861	14	2.8	16	77	22	56	65	2	4	27	1.25
37480584--37481374	206	3.8	206	89	0	1170	29	21	17	31	1.96
37492932--37493010	28	2.9	28	80	10	76	60	1	1	36	1.13
37492945--37493082	12	11.2	12	69	25	69	60	0	3	34	1.19
37492939--37493080	13	11.5	13	69	23	60	61	0	3	33	1.18
37492937--37493083	11	12.5	11	68	22	63	61	0	3	34	1.18
37495643--37495801	27	5.9	27	77	11	157	35	22	22	19	1.96
37495661--37495801	54	2.6	54	87	2	212	36	23	21	18	1.95
37495907--37495969	26	2.3	26	83	5	72	30	11	25	33	1.90
37497409--37497515	26	4.2	26	91	2	180	36	24	7	31	1.83
37497409--37497515	51	2.1	52	94	1	189	36	24	7	31	1.83
37500871--37501008	39	3.6	38	82	3	168	27	5	21	44	1.75
37503553--37503650	48	2.0	48	90	0	151	44	5	12	37	1.64
37503562--37503660	48	2.1	48	88	0	144	46	5	8	40	1.55
37518596--37518809	46	4.6	46	79	9	204	22	29	19	28	1.98
37518642--37518812	94	1.8	92	85	7	238	23	28	19	28	1.98
37546298--37546327	16	1.9	16	93	6	53	36	6	0	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37551944--37551995	21	2.5	21	93	0	86	9	23	13	53	1.68
37551944--37552012	21	3.3	21	84	6	70	11	24	10	53	1.68
37555677--37555722	21	2.1	22	84	11	60	41	6	2	50	1.40
37557335--37557467	48	2.8	47	80	8	155	33	8	5	53	1.53
37558417--37558452	7	5.0	7	89	3	54	25	5	13	55	1.60
37558427--37558469	14	3.0	15	83	16	56	30	0	13	55	1.39
37559053--37559095	18	2.4	18	92	0	68	20	27	9	41	1.83
37563336--37563378	11	3.8	11	81	6	59	30	2	0	67	1.03
37563337--37563383	23	2.0	23	100	0	94	31	4	0	63	1.13
37566106--37566457	175	2.0	172	92	3	591	44	21	15	19	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167