genome.fa.s23.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  132  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44177524--44177555	15	2.1	15	100	0	64	37	6	18	37	1.76
44182320--44182425	55	1.9	55	82	0	131	18	30	26	24	1.98
44189667--44190486	6	136.8	6	99	0	1588	16	15	0	67	1.24
44197181--44197303	28	4.4	28	86	2	158	33	26	12	27	1.92
44197180--44197303	56	2.2	57	86	2	180	33	27	12	27	1.92
44204756--44204878	28	4.4	28	88	2	167	33	27	12	26	1.92
44209617--44209652	3	12.0	3	87	0	54	63	0	5	30	1.17
44212907--44212968	31	2.0	31	100	0	124	19	19	9	51	1.74
44218399--44218576	27	6.6	27	84	3	205	29	28	15	26	1.96
44218420--44218575	82	1.9	81	88	3	233	29	28	15	26	1.96
44226591--44226766	27	6.5	27	84	3	201	30	27	15	26	1.96
44226612--44226766	82	1.9	81	88	4	231	29	27	15	27	1.96
44243242--44243354	43	2.6	43	81	2	147	29	14	23	33	1.93
44249000--44249130	47	2.8	47	87	3	165	23	17	29	29	1.97
44250534--44250575	22	1.9	23	85	9	61	42	0	14	42	1.45
44258355--44258400	23	2.0	23	84	12	60	45	10	6	36	1.65
44258362--44258406	23	2.0	23	82	8	56	40	13	8	37	1.76
44261703--44261859	39	4.0	39	83	0	188	32	5	19	42	1.73
44279196--44279376	6	29.8	6	78	14	194	49	14	17	18	1.80
44279175--44279351	30	5.9	30	83	9	184	49	14	16	18	1.79
44279201--44279376	79	2.2	79	89	7	261	48	15	17	18	1.81
44279494--44279567	27	2.8	27	78	13	82	36	22	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44279518--44279575	27	2.1	27	84	6	73	36	29	20	13	1.91
44279878--44279960	27	3.1	26	87	5	112	37	21	21	19	1.94
44280160--44280354	27	7.2	27	80	2	194	26	19	17	36	1.94
44280186--44280346	81	2.0	81	86	4	227	25	18	19	37	1.94
44280366--44280883	27	18.9	27	81	6	596	40	9	22	27	1.85
44280717--44280914	80	2.5	80	86	4	256	37	9	25	26	1.87
44286139--44286215	39	2.0	38	92	2	127	24	32	16	25	1.96
44290578--44290616	17	2.2	18	86	13	55	61	0	0	38	0.96
44290587--44290628	17	2.3	19	84	8	52	64	2	0	33	1.07
44290771--44290925	10	14.8	10	68	24	81	63	1	1	32	1.17
44290754--44290890	5	29.0	5	71	17	80	61	0	2	35	1.14
44290759--44290886	22	5.9	22	69	19	74	61	0	2	35	1.14
44290786--44290967	27	7.2	25	69	20	80	60	1	2	35	1.18
44292398--44292870	44	10.8	44	87	1	680	28	27	14	29	1.95
44293277--44293329	20	2.6	21	76	8	56	18	26	9	45	1.80
44297280--44297331	26	2.0	26	96	0	95	11	32	11	44	1.77
44305012--44305066	17	3.1	19	77	12	55	61	1	1	34	1.17
44305187--44305323	5	29.0	5	70	17	71	61	1	2	35	1.17
44305195--44305353	32	5.4	30	71	23	108	61	3	2	32	1.25
44305219--44305401	27	7.2	25	69	19	80	60	2	2	34	1.21
44305210--44305321	28	3.6	32	73	22	96	61	1	1	34	1.17
44305246--44305347	52	1.9	55	82	13	133	62	1	1	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44305578--44305638	30	2.1	29	81	9	70	49	6	14	29	1.69
44319741--44319773	15	2.2	15	94	0	57	6	3	39	51	1.42
44322380--44322418	16	2.4	17	91	4	62	48	5	2	43	1.38
44323655--44323706	25	2.2	23	82	6	59	23	9	1	65	1.32
44324124--44324187	18	3.6	17	78	12	74	25	6	3	65	1.31
44327612--44327648	16	2.2	17	86	13	51	56	0	0	43	0.99
44351204--44351295	48	1.9	48	88	4	141	43	26	11	18	1.84
44355741--44355834	40	2.4	39	77	10	102	39	36	11	12	1.80
44358114--44358178	27	2.4	27	78	0	76	23	26	12	38	1.90
44358210--44358333	27	4.6	27	80	4	133	42	20	8	28	1.80
44358182--44358309	54	2.4	53	76	8	125	40	21	10	26	1.86
44358210--44358333	54	2.3	54	81	4	151	42	20	8	28	1.80
44358345--44358396	27	1.9	27	88	7	79	40	13	11	34	1.81
44358437--44358514	27	2.9	27	74	11	79	35	21	20	21	1.96
44359315--44359384	25	2.8	25	86	4	97	28	24	21	25	1.99
44359314--44359411	25	4.0	23	79	10	88	29	22	21	26	1.99
44359604--44359686	31	2.7	30	88	3	123	30	14	25	30	1.95
44359700--44359754	29	1.9	28	88	3	83	23	20	23	32	1.98
44364779--44364909	40	3.3	39	79	9	140	22	21	26	29	1.99
44369388--44369464	40	1.9	40	83	0	100	37	31	16	14	1.89
44371531--44371571	20	2.0	21	86	13	59	26	19	0	53	1.45
44392886--44393890	501	2.0	494	92	3	1647	28	14	16	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44397006--44397087	40	2.0	40	95	0	146	28	15	18	37	1.91
44402353--44402460	53	2.0	53	92	0	180	34	2	0	62	1.09
44402497--44402566	21	3.1	21	76	15	68	28	0	2	68	1.04
44402514--44402562	26	2.0	26	92	8	84	32	0	4	63	1.13
44410677--44410751	37	2.0	37	100	0	150	44	10	24	21	1.84
44423822--44423862	21	2.1	19	86	9	55	31	7	9	51	1.62
44424383--44424450	30	2.3	29	77	7	73	33	11	17	36	1.86
44428189--44428251	27	2.3	26	76	10	63	36	1	11	50	1.47
44428247--44428278	10	3.3	10	95	4	57	31	6	0	62	1.20
44431976--44432013	6	6.7	6	87	6	53	15	2	0	81	0.80
44431978--44432039	5	12.4	5	80	14	58	17	3	0	79	0.87
44431978--44432036	16	3.5	17	86	9	77	16	3	0	79	0.86
44431976--44432039	22	2.9	21	84	11	76	18	3	0	78	0.89
44431985--44432039	26	2.1	27	86	10	78	18	3	0	78	0.90
44432812--44433171	96	3.8	96	98	0	675	25	15	28	30	1.95
44433810--44433839	15	2.0	15	93	0	51	50	0	10	40	1.36
44433864--44433895	10	3.3	10	95	4	57	31	6	0	62	1.20
44438058--44438087	14	2.2	13	94	5	51	86	0	13	0	0.57
44443418--44443456	15	2.6	16	88	12	64	48	0	0	51	1.00
44446041--44446075	2	17.5	2	93	0	61	45	0	0	54	0.99
44446559--44446640	28	3.0	27	83	1	101	21	10	19	47	1.80
44450848--44450887	21	1.9	21	89	0	62	17	12	7	62	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44451134--44451171	13	3.0	13	84	7	51	68	0	0	31	0.90
44466010--44466045	13	2.8	14	84	16	51	27	25	0	47	1.52
44465997--44466037	18	2.2	19	87	12	59	29	24	0	46	1.53
44466160--44466294	39	3.4	38	73	8	101	28	28	20	23	1.99
44466535--44466573	18	2.1	19	90	4	62	48	10	0	41	1.37
44467891--44467947	5	11.0	5	78	14	62	56	1	0	42	1.10
44467890--44467945	12	4.5	12	81	16	69	55	1	0	42	1.10
44467892--44467947	26	2.2	26	90	6	69	55	1	0	42	1.10
44469734--44469779	12	3.9	12	88	5	76	15	2	0	82	0.76
44469735--44469779	23	2.0	23	95	0	81	15	2	0	82	0.77
44472485--44472520	13	2.8	14	84	16	51	27	25	0	47	1.52
44472472--44472512	18	2.2	19	87	12	59	29	24	0	46	1.53
44473824--44473880	5	11.0	5	78	14	62	56	1	0	42	1.10
44473823--44473878	12	4.5	12	81	16	69	55	1	0	42	1.10
44473825--44473880	26	2.2	26	90	6	69	55	1	0	42	1.10
44480590--44480669	39	2.1	39	97	0	151	32	21	20	26	1.97
44497718--44497775	30	1.9	30	93	6	100	15	29	34	20	1.94
44501522--44501574	20	2.7	20	88	5	81	28	20	13	37	1.90
44504316--44504341	13	2.0	13	100	0	52	30	30	23	15	1.95
44533477--44533510	16	2.1	16	94	0	59	14	5	8	70	1.31
44540571--44540618	20	2.5	20	78	18	57	29	18	25	27	1.98
44540607--44540745	60	2.3	59	78	8	138	30	20	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44542884--44542923	17	2.4	18	80	16	50	32	0	10	57	1.32
44544572--44544619	20	2.5	20	78	18	57	29	18	25	27	1.98
44545696--44545814	42	2.7	43	84	6	150	31	21	21	25	1.98
44545725--44545814	42	2.1	43	93	4	155	34	23	20	22	1.97
44546071--44546118	21	2.3	21	92	0	78	0	56	20	22	1.43
44551447--44551633	79	2.3	79	83	5	241	26	20	14	37	1.92
44552497--44552596	41	2.4	41	96	0	182	23	28	24	25	2.00
44565682--44565910	110	2.1	108	87	7	320	39	9	18	32	1.83
44567847--44567884	8	4.9	8	87	6	51	78	2	0	18	0.86
44572416--44572542	28	4.6	27	82	7	141	28	28	14	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167