genome.fa.s23.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  143  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47629128--47629701	87	6.4	86	78	8	279	36	19	15	28	1.92
47629213--47629702	92	5.4	92	79	10	421	36	18	16	28	1.92
47629274--47629723	92	4.9	93	81	7	458	37	18	16	27	1.92
47629526--47629558	14	2.4	14	94	0	57	63	6	12	18	1.48
47629659--47629926	76	3.6	76	81	6	359	30	19	16	33	1.94
47629635--47629923	146	2.0	147	91	0	472	32	20	16	30	1.94
47630031--47630057	14	1.9	14	100	0	54	70	7	7	14	1.32
47630113--47630157	13	3.4	13	84	6	63	68	4	11	15	1.34
47629941--47630229	100	2.9	101	86	4	390	40	18	16	24	1.90
47630040--47630496	177	2.6	174	87	5	645	37	19	17	26	1.93
47630462--47630496	14	2.5	14	95	0	61	57	2	20	20	1.54
47630388--47630966	75	6.9	82	71	18	335	34	20	16	28	1.94
47630355--47630884	250	2.2	236	84	7	674	33	20	16	28	1.95
47630476--47630973	162	3.1	161	79	9	563	35	19	16	28	1.94
47630872--47630906	14	2.6	14	90	4	54	51	5	14	28	1.65
47630813--47630971	87	1.8	87	87	5	241	33	21	16	28	1.95
47634437--47634478	21	2.0	21	95	0	75	11	38	4	45	1.62
47640522--47640624	52	2.0	52	94	0	179	34	17	10	36	1.85
47640642--47640677	12	3.0	12	87	0	54	25	27	5	41	1.77
47640650--47640681	16	1.9	17	93	6	57	25	28	6	40	1.79
47641149--47641198	25	2.0	25	92	0	82	32	20	20	28	1.97
47646121--47646323	104	2.0	104	93	0	352	34	22	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47646522--47646602	41	2.0	41	97	0	153	29	14	25	29	1.95
47649567--47649607	21	2.0	21	90	0	64	26	21	31	19	1.97
47659586--47659661	5	14.6	5	81	13	91	18	18	1	61	1.41
47659586--47659661	22	3.4	21	87	7	98	18	18	1	61	1.41
47659654--47659720	18	3.6	18	86	8	80	17	13	2	65	1.38
47659747--47659832	5	16.4	5	71	17	59	27	17	0	54	1.43
47659803--47659839	16	2.2	18	90	9	60	24	10	0	64	1.25
47659964--47660168	115	1.8	110	82	7	259	34	20	15	29	1.93
47670486--47670517	5	6.6	5	92	7	57	81	0	0	18	0.70
47670487--47670517	9	3.3	9	95	4	53	80	0	0	19	0.71
47678408--47678433	3	8.7	3	100	0	52	69	0	0	30	0.89
47680990--47681068	5	14.8	5	73	16	52	10	10	2	77	1.09
47681002--47681062	17	3.8	17	82	12	92	11	9	1	77	1.07
47680990--47681075	31	2.7	31	89	5	120	10	9	2	77	1.07
47681096--47681165	9	7.9	9	73	9	54	12	4	4	78	1.04
47681103--47681144	16	2.5	17	80	11	50	11	7	4	76	1.15
47681112--47681157	24	1.9	24	82	8	58	10	4	6	78	1.08
47699294--47699352	26	2.3	26	85	5	75	45	6	15	32	1.72
47704821--47704896	37	2.1	37	94	0	134	21	11	19	47	1.81
47710205--47710234	5	6.0	5	92	0	51	36	0	23	40	1.55
47710252--47710295	17	2.6	17	79	13	54	40	0	20	38	1.53
47711113--47711174	30	2.1	30	100	0	124	38	3	17	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47711582--47711712	55	2.4	54	81	5	138	23	29	24	22	1.99
47712551--47712867	94	3.4	94	80	5	351	23	29	20	26	1.99
47712604--47712851	47	5.3	46	72	10	148	25	30	19	25	1.98
47715066--47715236	46	3.7	46	88	1	236	21	23	12	42	1.87
47717609--47718049	220	2.0	220	98	0	855	30	19	5	44	1.74
47718715--47719116	154	2.6	153	81	6	463	33	17	20	28	1.96
47719465--47719651	14	13.4	14	68	7	67	22	2	31	43	1.65
47719465--47719504	21	1.9	21	84	0	53	17	0	30	52	1.45
47719599--47719654	29	1.9	29	85	7	78	25	1	32	41	1.66
47724683--47724866	67	2.8	64	75	10	178	29	16	29	23	1.96
47727274--47727349	20	3.8	20	94	3	127	15	28	26	28	1.96
47727803--47727854	16	3.7	15	71	28	51	36	28	7	26	1.84
47727801--47727852	26	2.0	26	96	0	95	38	28	7	25	1.83
47731545--47731577	13	2.6	13	90	4	50	39	0	12	48	1.40
47732950--47733088	35	4.0	35	79	3	154	30	14	20	33	1.93
47735285--47735473	58	3.3	58	100	0	378	37	4	4	52	1.43
47735536--47735757	9	24.0	9	69	14	80	45	16	2	34	1.62
47748560--47749236	339	2.0	339	98	0	1309	43	11	16	28	1.83
47749839--47749934	11	8.5	11	69	17	63	61	1	3	34	1.19
47749799--47749916	45	2.6	45	81	13	113	59	2	4	33	1.30
47749839--47749934	25	4.3	23	74	16	94	61	1	3	34	1.19
47749884--47749936	9	5.7	9	82	6	61	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47749991--47750036	23	2.0	23	83	8	58	56	4	2	36	1.31
47752164--47752209	23	2.0	23	100	0	92	30	13	13	43	1.81
47755802--47755851	21	2.4	21	93	0	82	34	16	48	2	1.57
47761497--47761548	14	3.5	14	72	12	50	40	1	3	53	1.30
47765522--47765565	19	2.2	20	92	4	72	47	9	13	29	1.74
47775551--47775575	12	2.1	12	100	0	50	32	12	32	24	1.91
47779022--47779066	17	2.5	18	89	7	65	17	0	4	77	0.92
47779022--47779065	9	4.9	9	83	10	54	18	0	4	77	0.94
47780651--47780825	86	2.0	86	90	2	271	31	14	12	42	1.82
47783909--47783937	14	2.1	14	100	0	58	20	13	6	58	1.58
47787008--47787057	18	2.5	20	78	18	59	8	0	14	78	0.97
47787276--47787371	43	2.2	45	79	3	106	32	22	13	31	1.93
47787285--47787554	140	1.9	138	86	1	378	27	24	15	32	1.96
47787434--47788100	181	3.7	181	89	2	966	28	23	18	29	1.98
47788735--47788982	130	1.9	128	85	4	338	38	12	17	31	1.87
47788735--47788982	64	3.8	64	82	6	295	38	12	17	31	1.87
47790075--47790118	19	2.3	19	84	7	54	15	2	2	79	0.93
47790617--47790656	22	1.9	21	85	10	55	7	10	5	77	1.11
47796901--47796932	11	3.0	11	95	4	57	9	0	9	81	0.88
47796889--47796932	10	4.5	10	81	16	56	11	0	9	79	0.93
47798741--47798770	7	4.1	7	91	8	51	86	0	0	13	0.57
47799612--47799639	14	2.0	14	100	0	56	57	14	14	14	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47806932--47806965	12	3.0	11	87	8	50	0	20	0	79	0.73
47806932--47806960	6	5.0	6	91	8	51	0	17	0	82	0.66
47807003--47807033	14	2.2	14	94	0	53	12	6	3	77	1.08
47808397--47808548	52	2.9	52	81	4	173	31	25	15	27	1.96
47815516--47815558	20	2.1	20	83	12	52	46	0	4	48	1.22
47815577--47815630	26	2.2	24	83	12	65	40	0	1	57	1.09
47824867--47824897	7	4.6	7	96	4	55	29	9	0	61	1.28
47824854--47824898	14	3.5	13	82	11	56	33	6	0	60	1.23
47833373--47833465	18	5.2	18	93	0	159	26	24	17	31	1.97
47833373--47833465	36	2.6	36	98	0	177	26	24	17	31	1.97
47845694--47845790	33	2.8	35	72	20	89	43	2	1	53	1.19
47845974--47846038	26	2.5	27	80	7	80	38	21	6	33	1.78
47845974--47846038	13	4.9	14	75	9	66	38	21	6	33	1.78
47847832--47847918	42	2.1	42	91	0	138	28	9	11	50	1.69
47847832--47847912	22	3.9	21	77	8	85	28	9	12	49	1.72
47848884--47848947	31	2.1	31	100	0	128	15	3	12	68	1.32
47848890--47848964	31	2.4	31	88	4	107	17	5	9	68	1.36
47853082--47853116	3	11.7	3	100	0	70	31	0	34	34	1.58
47865735--47865790	21	2.6	21	77	13	60	14	5	1	78	1.00
47865796--47865869	36	2.0	36	85	12	98	22	5	2	68	1.23
47865823--47865870	18	2.7	17	81	9	60	29	4	0	66	1.10
47865886--47865945	21	2.7	22	82	10	61	41	0	1	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47865886--47865945	23	2.7	23	82	10	63	41	0	1	56	1.09
47866207--47866255	18	2.8	18	76	14	57	61	0	0	38	0.96
47866239--47866281	11	4.0	11	75	6	52	51	0	0	48	1.00
47866592--47866637	23	2.1	21	84	11	58	41	0	4	54	1.20
47866770--47866817	18	2.8	18	75	15	57	60	0	0	39	0.97
47866765--47866824	27	2.2	28	84	3	77	53	0	0	46	1.00
47869674--47869766	30	3.1	30	80	6	107	24	18	26	30	1.98
47873267--47873303	19	1.9	19	89	10	58	35	0	2	62	1.10
47873329--47873376	10	5.0	9	80	12	51	41	0	4	54	1.20
47873329--47873386	29	2.0	29	93	3	100	41	0	3	55	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167