genome.fa.s23.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  166  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54876153--54876254	27	3.8	26	88	5	132	36	21	23	18	1.95
54876413--54876477	22	3.0	22	75	8	69	36	23	20	20	1.95
54876905--54877145	27	9.0	27	83	2	272	26	20	18	34	1.95
54876905--54877149	54	4.6	54	83	6	300	26	20	18	34	1.95
54876939--54877146	108	1.9	108	93	1	355	25	19	20	35	1.96
54877134--54877287	27	5.8	27	80	7	154	28	7	21	42	1.79
54877166--54877304	54	2.6	54	86	5	176	28	5	21	44	1.75
54877316--54877574	27	9.6	27	92	0	401	43	9	20	27	1.82
54877589--54877680	27	3.4	27	79	5	96	30	9	20	39	1.85
54887384--54887481	49	2.0	49	95	0	178	41	12	12	33	1.80
54895491--54895572	30	2.7	30	86	0	110	14	23	35	26	1.93
54908910--54908966	29	2.0	28	83	6	71	43	5	26	24	1.75
54909318--54909473	43	3.7	42	79	5	154	26	14	25	33	1.94
54909608--54909652	22	2.0	22	100	0	90	37	8	26	26	1.86
54911654--54911699	18	2.6	18	74	16	51	34	0	6	58	1.24
54913115--54913143	13	2.2	13	100	0	58	0	6	27	65	1.18
54915076--54915176	40	2.6	40	85	3	134	12	14	37	34	1.85
54928617--54928642	13	2.0	13	100	0	52	15	30	46	7	1.74
54933511--54933540	6	4.8	6	95	4	51	13	0	0	86	0.57
54941480--54941508	13	2.2	13	100	0	58	13	6	13	65	1.45
54951893--54951929	16	2.3	16	95	0	65	48	13	24	13	1.78
54952040--54952076	19	2.0	18	89	5	56	29	18	37	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54952145--54952291	29	5.2	29	80	4	149	27	13	31	27	1.94
54954352--54954495	40	3.6	40	90	6	213	26	26	22	25	2.00
54963298--54963371	31	2.4	31	93	0	121	21	36	25	16	1.94
54973680--54973822	29	5.0	29	79	3	139	28	14	30	25	1.95
54973695--54973822	57	2.2	57	81	8	136	28	16	32	23	1.96
54975349--54975378	14	2.1	14	93	0	51	33	0	13	53	1.40
54975284--54975733	232	1.9	232	94	0	801	29	12	18	39	1.87
54976217--54976257	22	1.9	22	90	5	66	4	26	31	36	1.78
54978555--54978628	26	2.9	26	88	6	107	27	24	22	25	2.00
54984036--54984070	16	2.2	16	94	0	61	48	20	22	8	1.76
54984282--54984342	29	2.1	28	93	3	104	26	16	29	27	1.97
54984294--54984375	29	2.8	29	86	0	101	26	17	29	26	1.97
54989080--54989264	40	4.6	40	83	8	232	24	28	23	23	1.99
54989080--54989264	83	2.3	79	87	5	271	24	28	23	23	1.99
54994969--54995042	33	2.2	33	92	0	130	41	29	6	21	1.79
54995933--54996047	29	4.0	29	85	6	146	26	15	29	27	1.96
54995946--54996056	57	1.9	58	88	1	170	26	16	30	27	1.96
54997798--54997878	40	2.0	40	88	4	119	28	28	19	23	1.98
54998046--54998447	200	2.0	200	98	0	777	30	18	11	39	1.86
54999214--54999323	51	2.1	52	94	1	195	18	25	10	45	1.82
54999405--55000196	56	14.1	56	99	0	1575	23	21	8	46	1.79
55001463--55001777	40	7.9	40	79	6	220	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55001480--55001776	80	3.7	78	79	5	258	24	27	22	24	2.00
55001549--55001777	79	2.9	81	80	8	229	24	27	22	24	2.00
55029262--55029446	79	2.3	81	84	7	236	24	22	27	25	2.00
55029263--55029446	40	4.6	40	83	9	216	24	22	27	25	2.00
55029315--55029479	79	2.1	79	84	6	210	26	21	27	25	1.99
55033092--55033144	22	2.4	22	80	0	61	35	15	13	35	1.86
55033742--55033774	17	2.0	17	94	5	59	57	18	6	18	1.60
55035485--55035524	21	1.9	21	85	10	55	70	0	15	15	1.18
55035496--55035531	19	1.9	18	88	5	54	75	0	8	16	1.04
55041998--55042054	28	2.0	28	96	0	105	24	36	14	24	1.92
55049215--55049472	47	5.4	47	95	0	435	29	29	8	32	1.88
55049287--55049362	22	3.3	22	66	16	64	26	30	10	32	1.90
55053940--55054076	42	3.2	42	78	8	143	45	17	19	17	1.86
55055658--55055718	20	3.0	20	85	2	68	39	22	24	13	1.90
55064516--55064554	18	2.2	18	90	0	60	41	12	7	38	1.72
55068430--55068592	42	3.8	41	70	13	123	31	22	15	29	1.95
55074596--55074740	40	3.6	41	85	6	190	26	24	25	23	2.00
55076656--55076715	16	3.8	16	81	16	70	36	0	0	63	0.95
55076662--55076713	15	3.3	15	82	10	68	32	0	0	67	0.91
55076662--55076747	15	5.3	16	71	15	61	31	2	0	66	1.04
55076655--55076747	32	2.9	31	84	9	100	33	2	0	64	1.06
55081556--55082507	43	22.1	43	93	0	1607	11	23	33	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55081558--55082520	86	11.2	86	99	0	1881	11	23	33	31	1.91
55086058--55086246	49	3.8	49	83	2	234	28	25	19	26	1.99
55086055--55086251	100	2.0	100	93	0	340	28	24	20	25	1.99
55096908--55096958	24	2.1	24	100	0	102	45	3	13	37	1.63
55097981--55098029	15	3.1	15	81	18	64	59	0	0	40	0.98
55099925--55100035	40	2.8	40	83	1	98	25	28	23	22	1.99
55099948--55100092	40	3.6	41	85	6	190	23	25	24	26	2.00
55099912--55100092	81	2.3	79	81	2	202	23	25	24	25	2.00
55106096--55106175	41	1.9	41	87	7	117	28	13	22	35	1.92
55106101--55106191	42	2.2	41	78	9	96	29	14	23	32	1.94
55106101--55106258	87	1.9	83	81	5	190	29	16	22	31	1.96
55110134--55110172	18	2.2	18	90	0	60	38	7	12	41	1.72
55110141--55110179	18	2.2	18	85	0	51	38	5	12	43	1.65
55113908--55113959	26	2.0	27	84	3	70	40	1	0	57	1.10
55118970--55119030	20	3.0	20	85	2	68	13	24	22	39	1.90
55120612--55120717	43	2.5	42	81	6	133	18	20	16	44	1.87
55120612--55120748	42	3.2	41	79	4	139	17	19	17	45	1.86
55127261--55127346	42	2.0	42	100	0	172	37	11	13	37	1.82
55128359--55128424	23	2.9	23	68	20	57	42	19	22	15	1.88
55128434--55128486	26	2.1	25	82	3	61	37	22	16	22	1.94
55129586--55129621	19	1.9	18	88	5	54	16	8	0	75	1.04
55129593--55129632	21	1.9	21	85	10	55	15	15	0	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55131343--55131375	17	2.0	17	94	5	59	18	6	18	57	1.60
55131973--55132026	22	2.5	22	81	0	63	37	12	14	35	1.85
55135648--55135832	40	4.7	40	82	6	216	25	27	22	24	2.00
55135648--55135830	79	2.3	81	81	8	214	25	27	21	25	1.99
55178417--55178538	46	2.6	47	84	5	147	26	22	14	36	1.93
55179756--55179842	45	1.9	45	88	4	131	26	25	22	25	2.00
55180663--55180808	50	2.9	49	87	4	168	50	10	12	26	1.73
55180694--55180808	25	4.6	25	93	2	196	48	11	11	28	1.73
55183922--55183954	17	2.0	17	88	5	50	18	9	18	54	1.69
55186974--55186998	10	2.5	10	100	0	50	28	20	32	20	1.97
55187479--55187517	10	4.0	10	80	6	53	41	0	2	56	1.13
55188120--55188160	21	2.1	18	86	13	55	26	2	4	65	1.25
55193712--55193896	79	2.3	82	84	7	238	25	27	22	24	2.00
55193693--55193896	40	5.1	40	82	8	238	25	27	22	25	2.00
55195832--55195977	50	2.9	50	94	0	256	28	29	17	24	1.97
55197468--55197503	3	12.0	3	100	0	72	0	33	0	66	0.92
55199330--55199375	18	2.6	18	89	6	67	34	23	10	30	1.89
55199341--55199385	18	2.7	17	86	10	58	37	26	6	28	1.82
55202367--55202424	24	2.4	24	80	8	64	13	22	20	43	1.87
55211242--55211273	13	2.3	15	89	10	50	28	34	0	37	1.57
55217535--55217563	13	2.1	14	93	6	51	37	0	13	48	1.43
55218427--55218528	43	2.4	43	83	1	125	27	13	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55223438--55223479	17	2.5	17	84	7	59	38	11	16	33	1.86
55228293--55228334	17	2.5	17	84	7	59	38	11	16	33	1.86
55230119--55230262	39	3.7	40	81	11	156	24	27	22	25	2.00
55250563--55250650	27	3.3	27	77	0	77	35	17	20	27	1.94
55253478--55253742	40	6.7	40	95	1	462	28	25	23	23	1.99
55256755--55256823	27	2.6	27	86	2	86	31	15	24	27	1.96
55257248--55257304	28	2.0	28	86	0	78	17	21	24	36	1.94
55258231--55258543	48	6.5	48	89	2	443	26	30	16	26	1.97
55263369--55263454	31	2.7	32	85	5	120	33	11	3	51	1.55
55265385--55265558	46	3.8	45	78	6	152	24	26	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167