genome.fa.s23.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  49  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15134131--15134246	44	2.7	43	80	6	128	23	15	26	34	1.95
15135507--15135734	48	4.8	48	77	9	250	24	28	19	26	1.99
15135502--15135734	96	2.4	95	83	4	279	24	28	19	27	1.98
15135462--15135744	48	5.9	47	78	6	248	25	28	18	27	1.98
15143188--15143390	48	4.2	48	82	5	239	23	30	20	26	1.98
15143188--15143396	96	2.2	96	86	3	278	23	30	20	25	1.98
15143246--15143548	158	1.9	158	83	4	396	26	30	17	26	1.97
15146570--15146849	94	3.0	91	80	13	293	26	18	30	23	1.98
15146570--15146850	49	5.9	50	76	17	244	26	19	30	23	1.98
15148253--15148585	48	6.9	48	75	5	289	27	18	29	24	1.98
15148263--15148581	144	2.2	144	80	3	329	28	19	29	23	1.98
15152327--15152519	60	3.2	58	81	9	185	24	14	13	46	1.81
15152416--15152519	29	3.5	28	71	19	86	25	12	13	48	1.78
15154849--15154904	28	2.0	28	100	0	112	14	21	14	50	1.78
15157750--15157797	17	2.7	17	81	12	53	66	2	0	31	1.03
15158056--15158109	20	2.7	20	77	11	56	42	5	0	51	1.25
15162265--15162375	54	2.1	53	87	1	159	17	22	22	37	1.94
15162265--15162375	27	4.2	26	86	5	141	17	22	22	37	1.94
15164535--15164610	36	2.1	36	97	0	143	25	9	11	53	1.66
15165447--15165774	82	4.1	82	80	6	346	46	11	12	30	1.77
15165447--15165738	158	1.8	159	84	0	397	46	11	11	30	1.75
15165721--15165852	71	1.9	71	85	3	185	43	9	17	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15166004--15166114	48	2.3	49	80	7	120	53	9	2	35	1.47
15166526--15166589	32	2.0	32	87	0	92	54	9	7	28	1.60
15169352--15169396	17	2.7	17	82	3	56	17	4	2	75	1.07
15169352--15169408	17	3.4	16	78	7	51	17	5	5	71	1.23
15171923--15172093	93	1.8	93	91	0	279	28	28	21	22	1.99
15171918--15172090	46	3.7	46	77	10	190	28	27	21	22	1.99
15179483--15179653	93	1.8	93	92	0	288	29	28	19	22	1.98
15179478--15179650	46	3.7	46	76	10	181	30	27	19	22	1.98
15181107--15181251	48	3.0	48	88	5	222	24	18	26	30	1.98
15181107--15181270	48	3.4	48	81	7	199	25	20	25	29	1.99
15188927--15189107	48	3.9	48	75	12	178	26	19	24	29	1.98
15190950--15191062	43	2.7	43	81	4	122	25	19	24	30	1.98
15192302--15192510	53	3.9	53	77	3	211	37	17	23	21	1.94
15193943--15194000	30	1.9	30	100	0	116	39	0	15	44	1.47
15193943--15193989	15	3.1	15	72	22	53	40	0	17	42	1.49
15193949--15193999	15	3.2	17	73	21	65	37	0	15	47	1.46
15193943--15194017	30	2.5	29	85	8	71	40	2	16	41	1.62
15194805--15194901	43	2.3	43	96	0	176	13	20	42	23	1.88
15201663--15201711	22	2.2	22	88	0	71	36	6	16	40	1.73
15208851--15208920	28	2.5	28	84	9	90	30	14	24	31	1.94
15210494--15210528	11	3.5	10	88	11	54	48	11	0	40	1.39
15214266--15214697	27	15.9	27	78	7	214	37	18	8	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214488--15214726	27	8.8	27	74	9	191	40	18	8	31	1.82
15214744--15214817	27	2.7	27	78	12	80	36	21	20	21	1.95
15216062--15216132	20	3.5	20	92	0	115	36	11	21	30	1.88
15216179--15216344	25	6.9	24	91	3	246	27	21	23	28	1.99
15216564--15216627	31	2.1	31	90	0	101	37	14	23	25	1.92
15233983--15234057	38	2.0	38	94	0	132	21	26	9	42	1.83
15239291--15239325	6	5.8	6	86	0	52	17	2	0	80	0.84
15244781--15244854	34	2.2	34	87	0	103	31	27	13	28	1.94
15244909--15244973	27	2.4	27	92	0	103	21	26	13	38	1.91
15245063--15245179	31	3.8	31	88	0	180	27	28	17	26	1.98
15245181--15245284	33	3.2	33	82	4	113	27	23	12	36	1.91
15246981--15247041	31	2.0	30	83	3	77	59	3	0	37	1.14
15251388--15251529	63	2.3	63	92	2	232	23	28	16	31	1.96
15251549--15251699	68	2.3	64	80	10	153	26	27	16	29	1.97
15255878--15256061	68	2.8	64	86	5	237	25	27	16	30	1.96
15256696--15256756	30	2.0	30	83	0	77	34	22	4	37	1.76
15258520--15258557	15	2.5	15	87	8	51	50	7	21	21	1.74
15262273--15262550	96	3.0	95	78	14	294	26	23	20	28	1.99
15262367--15262543	48	3.7	48	84	3	232	27	24	20	27	1.99
15275137--15275180	22	2.0	22	90	0	70	34	15	15	34	1.90
15277340--15277379	18	2.2	18	100	0	80	0	25	0	75	0.81
15294221--15294268	22	2.0	25	84	11	66	8	6	29	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15296967--15297188	40	5.6	40	91	1	349	28	25	22	23	1.99
15301558--15301602	17	2.7	17	93	3	74	53	11	0	35	1.37
15308374--15308689	47	6.7	49	71	14	157	24	28	19	27	1.99
15311722--15311812	46	2.0	46	91	0	146	29	25	20	24	1.99
15314569--15314605	15	2.5	15	86	0	56	59	13	16	10	1.61
15317100--15317126	14	1.9	14	100	0	54	14	22	37	25	1.93
15322930--15323140	40	5.2	40	87	3	269	23	24	27	25	2.00
15322934--15323120	83	2.3	80	88	4	268	23	24	27	24	2.00
15324677--15324773	29	3.5	27	83	5	97	30	27	14	26	1.95
15324677--15324773	27	3.5	28	84	5	117	30	27	14	26	1.95
15332361--15332453	46	2.0	46	95	4	170	25	27	6	39	1.80
15335292--15335469	46	3.8	46	78	7	189	29	25	20	23	1.99
15338923--15339172	40	6.3	40	79	9	210	25	21	27	25	1.99
15344392--15344428	6	6.5	6	81	12	51	83	0	16	0	0.64
15344392--15344428	17	2.2	17	90	0	56	83	0	16	0	0.64
15345688--15345825	40	3.5	40	89	3	190	23	23	28	23	2.00
15346606--15347004	199	2.0	199	95	0	717	34	14	18	33	1.91
15350548--15350797	40	6.3	41	83	5	239	24	23	27	24	2.00
15351309--15351420	56	2.0	56	98	0	215	29	10	15	44	1.80
15358101--15358233	49	2.7	49	78	6	144	27	21	27	23	1.99
15358205--15358296	45	2.0	45	93	0	157	27	16	25	31	1.96
15362292--15362347	15	3.6	15	81	9	67	16	14	19	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15369549--15369676	48	2.7	48	85	0	184	21	17	28	32	1.96
15371284--15371357	37	2.0	37	100	0	148	43	21	13	21	1.87
15372859--15372888	16	1.9	15	93	6	51	33	23	0	43	1.54
15373100--15373224	50	2.5	50	86	1	171	32	28	16	23	1.95
15376531--15376708	27	6.6	27	83	3	205	26	15	28	29	1.96
15376532--15376687	82	1.9	81	88	3	233	26	15	28	29	1.96
15376528--15376708	82	2.2	81	83	2	229	27	15	27	29	1.96
15384721--15384898	27	6.6	27	83	3	205	26	15	28	29	1.96
15384722--15384877	82	1.9	81	88	3	233	26	15	28	29	1.96
15384718--15384898	82	2.2	81	83	2	229	27	15	27	29	1.96
15389362--15389578	46	4.7	46	75	11	178	25	29	17	27	1.97
15395146--15395181	17	2.1	17	100	0	72	22	36	5	36	1.78
15395789--15395828	21	2.0	21	90	5	64	25	27	35	12	1.92
15396937--15397103	46	3.6	47	77	8	132	27	27	16	28	1.97
15396983--15397107	46	2.7	46	78	9	137	27	27	16	28	1.97
15399194--15399253	15	4.0	15	84	0	75	55	15	18	11	1.70
15402065--15402120	27	2.1	27	100	0	112	39	14	17	28	1.89
15402749--15402778	16	1.9	15	93	6	51	33	23	0	43	1.54
15402989--15403164	50	3.5	49	77	6	183	29	27	19	23	1.98
15425820--15426281	47	9.7	47	95	1	782	29	29	8	33	1.86
15425820--15426281	192	2.4	188	93	2	705	29	29	8	33	1.86
15429309--15429669	40	9.1	40	92	0	535	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15431932--15432526	47	12.6	47	94	2	840	28	30	9	31	1.88
15436422--15436495	30	2.4	31	81	4	105	27	28	14	29	1.95
15437348--15437408	30	2.0	30	83	0	77	32	21	9	36	1.86
15440336--15440493	42	3.7	42	78	7	151	30	24	16	29	1.96
15450047--15450191	27	5.4	27	89	1	184	35	16	20	27	1.94
15450035--15450196	53	3.0	52	85	3	207	33	17	20	27	1.96
15450035--15450188	80	1.9	81	88	4	231	33	16	22	27	1.96
15450180--15450277	27	3.7	26	80	5	106	42	23	7	26	1.79
15450180--15450439	54	4.8	54	72	5	168	41	20	8	28	1.82
15450205--15450381	27	6.6	27	74	5	144	41	22	9	27	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167