genome.fa.s23.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  46  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14275551--14275612	26	2.3	26	86	8	90	41	20	22	14	1.89
14276526--14276559	17	2.0	17	100	0	68	11	17	17	52	1.73
14281198--14281254	30	1.9	30	85	0	78	15	26	35	22	1.94
14283023--14283081	16	3.9	14	73	16	55	76	1	0	22	0.88
14283042--14283079	8	4.8	8	81	12	51	76	2	0	21	0.91
14283029--14283084	24	2.3	23	85	8	76	75	1	0	23	0.90
14283065--14283152	37	2.4	36	77	9	90	68	1	3	27	1.13
14299059--14299093	2	17.5	2	100	0	70	0	0	48	51	1.00
14303174--14303232	11	5.2	11	84	8	73	64	1	0	33	1.04
14305867--14306349	244	2.0	244	98	0	939	26	23	11	38	1.89
14308417--14308494	27	2.9	27	71	21	72	57	5	0	37	1.21
14310515--14310545	2	15.5	2	100	0	62	48	0	0	51	1.00
14319404--14319482	42	1.9	42	89	2	124	32	25	15	26	1.95
14319782--14319820	21	2.0	20	90	10	62	20	33	0	46	1.51
14323827--14323863	18	2.0	19	94	5	67	45	16	10	27	1.80
14325418--14325444	3	9.0	3	100	0	54	66	0	0	33	0.92
14327948--14327994	24	2.1	21	81	18	51	76	12	4	6	1.12
14328774--14328809	19	1.9	18	94	5	63	55	0	2	41	1.14
14328891--14329786	299	3.0	297	85	6	1037	36	13	10	39	1.80
14330114--14330154	19	2.2	19	100	0	82	17	34	29	19	1.94
14330121--14330162	19	2.2	19	91	0	66	16	33	30	19	1.94
14330152--14330208	29	1.9	30	82	3	71	29	36	22	10	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14331270--14331330	19	3.3	19	80	8	65	24	0	3	72	1.00
14331784--14331829	23	2.0	23	84	12	60	45	10	6	36	1.65
14331791--14331835	23	2.0	23	82	8	56	40	13	8	37	1.76
14333170--14333577	106	3.8	106	99	0	807	38	11	10	39	1.76
14334321--14334440	59	2.0	59	96	0	222	21	25	15	36	1.93
14339065--14339125	25	2.4	25	88	0	95	27	24	26	21	1.99
14341330--14341670	169	2.0	169	99	0	673	32	14	14	38	1.87
14342515--14342582	34	2.0	34	91	0	109	23	23	11	41	1.87
14345612--14345670	25	2.4	25	94	0	100	27	18	23	30	1.98
14347675--14347779	46	2.3	44	78	16	115	11	11	6	70	1.33
14348635--14348692	20	2.9	20	80	17	59	77	3	13	5	1.07
14351489--14351538	25	2.0	25	100	0	100	24	8	20	48	1.76
14353550--14353576	13	2.1	13	100	0	54	14	14	29	40	1.86
14357931--14358038	26	4.2	26	91	0	180	37	24	6	32	1.81
14364324--14364350	14	1.9	14	100	0	54	37	0	18	44	1.50
14364357--14364391	15	2.3	15	90	0	52	40	8	14	37	1.76
14365948--14365992	23	2.0	23	86	0	63	64	0	4	31	1.13
14367069--14367124	26	2.2	26	93	0	94	42	10	5	41	1.62
14367075--14367126	26	2.0	26	100	0	104	42	11	3	42	1.59
14369477--14369501	2	12.5	2	100	0	50	0	48	0	52	1.00
14370601--14370648	9	5.3	9	81	18	55	33	12	10	43	1.77
14370598--14370648	18	2.8	18	90	0	84	31	13	11	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14372813--14372889	30	2.7	30	76	11	74	31	15	7	45	1.75
14374730--14374790	27	2.3	27	80	13	72	27	0	6	65	1.17
14379326--14380200	46	19.0	46	98	0	1662	39	13	23	23	1.90
14380127--14380249	46	2.6	47	89	1	167	43	14	21	20	1.88
14380481--14380589	55	2.0	55	88	0	164	46	2	18	32	1.63
14381572--14381621	10	5.0	10	83	9	66	68	2	6	24	1.23
14384002--14384031	6	5.0	6	100	0	60	16	66	0	16	1.25
14385609--14385646	20	1.9	20	84	10	51	42	10	0	47	1.38
14390612--14390695	33	2.6	32	77	9	80	38	15	16	29	1.90
14390590--14390800	103	2.1	101	83	5	255	32	16	22	28	1.96
14392165--14392252	44	2.0	44	100	0	176	43	13	13	29	1.83
14394929--14395046	25	4.7	25	77	4	87	33	22	25	19	1.97
14395030--14395084	24	2.3	24	81	6	67	34	21	23	20	1.97
14414351--14414389	21	1.9	20	84	5	51	38	2	20	38	1.66
14414751--14414805	24	2.3	24	87	0	74	23	27	18	30	1.97
14414974--14415150	74	2.4	73	77	9	191	20	25	18	35	1.95
14415006--14415125	25	4.8	25	87	2	170	22	27	17	32	1.96
14415006--14415125	49	2.4	50	90	1	188	22	27	17	32	1.96
14415105--14415163	25	2.3	25	82	8	66	20	23	22	33	1.97
14427731--14427768	19	2.0	20	85	15	53	39	23	0	36	1.55
14427993--14428165	46	3.7	47	78	10	194	31	27	19	21	1.98
14428043--14428184	46	3.1	45	72	18	123	29	27	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14429714--14429763	24	2.0	25	84	3	66	30	22	4	44	1.71
14430535--14430610	17	4.4	17	80	8	82	34	22	1	42	1.62
14430558--14430606	11	4.4	11	78	14	55	40	20	0	38	1.53
14430775--14430950	70	2.3	76	82	11	195	37	20	1	40	1.60
14431220--14431278	30	2.0	30	83	12	77	32	10	1	55	1.43
14431776--14431827	3	17.7	3	78	11	54	57	1	1	38	1.21
14431783--14431827	16	2.8	16	89	3	63	57	2	2	37	1.23
14431863--14431906	22	2.0	22	100	0	88	45	4	0	50	1.22
14432303--14432365	12	5.3	12	69	16	51	61	3	0	34	1.12
14432984--14433017	2	17.0	2	93	0	59	47	50	0	2	1.16
14435484--14435513	14	2.1	14	100	0	60	26	13	23	36	1.92
14435436--14435560	62	2.0	62	98	0	241	28	18	25	27	1.98
14435498--14435814	48	6.6	48	81	7	306	28	19	27	24	1.98
14435498--14435816	142	2.2	143	81	5	349	28	19	27	24	1.98
14437947--14438101	43	3.7	41	79	10	170	23	16	28	30	1.96
14441590--14441664	33	2.3	33	88	0	105	22	30	10	36	1.88
14443122--14443169	20	2.5	20	82	3	62	41	18	18	20	1.90
14444129--14444177	22	2.2	22	92	0	80	26	38	18	16	1.91
14458384--14458518	70	1.9	70	95	0	243	39	11	17	31	1.85
14459746--14459931	55	3.4	55	87	0	255	23	29	24	23	1.99
14467672--14468556	62	14.3	62	99	0	1752	48	11	12	27	1.75
14478250--14478663	27	15.7	27	88	4	501	37	22	15	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14478250--14478663	52	7.9	52	85	5	489	37	22	15	23	1.92
14478250--14478663	79	5.3	78	91	2	589	37	22	15	23	1.92
14481333--14481376	17	2.5	17	81	3	52	70	0	4	25	1.06
14482264--14482330	32	2.1	32	94	0	116	43	4	16	35	1.68
14483865--14483899	17	2.1	17	100	0	70	37	0	17	45	1.48
14486136--14486182	18	2.6	18	89	0	76	25	23	0	51	1.49
14498906--14498963	19	3.0	20	82	5	64	32	0	3	63	1.11
14501140--14501186	3	15.3	3	95	4	85	65	0	34	0	0.93
14518582--14518622	20	2.0	21	85	4	57	26	17	17	39	1.91
14519190--14519227	2	19.0	2	100	0	76	0	0	50	50	1.00
14528694--14528747	21	2.6	19	85	14	63	62	0	3	33	1.12
14531004--14531069	32	2.1	32	82	0	78	31	10	7	50	1.65
14531017--14531078	32	2.0	32	87	6	92	27	9	8	54	1.61
14534600--14534706	53	2.0	53	96	0	196	27	24	6	42	1.79
14537737--14537784	22	2.2	22	84	0	60	22	25	16	35	1.95
14537744--14537794	22	2.4	22	93	3	86	21	23	13	41	1.89
14542579--14542650	35	2.1	35	97	0	135	38	33	9	18	1.83
14546762--14546826	29	2.3	27	80	15	69	69	0	9	21	1.16
14548148--14548204	29	1.9	30	82	3	71	57	19	3	19	1.54
14557937--14557967	16	2.0	15	93	6	53	41	0	0	58	0.98
14564078--14564112	18	1.9	18	100	0	70	40	25	11	22	1.88
14564647--14564793	35	4.1	35	81	6	154	38	27	14	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14564699--14564795	35	2.8	35	93	0	158	37	27	17	17	1.92
14574438--14574479	7	5.7	7	89	10	66	0	11	2	85	0.68
14574438--14574479	8	5.5	8	91	2	61	0	11	2	85	0.68
14577333--14577521	59	3.2	57	68	19	152	41	3	4	50	1.37
14577360--14577558	66	3.2	64	68	19	186	41	3	6	49	1.42
14577322--14577619	120	2.5	120	91	2	483	42	3	4	50	1.38
14577395--14577582	61	3.1	61	69	17	183	42	2	6	49	1.40
14577447--14577498	15	3.6	15	80	12	56	44	0	1	53	1.11
14577833--14577884	16	3.2	16	94	0	95	40	34	0	25	1.56
14585567--14585595	9	3.2	9	100	0	58	34	0	20	44	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167