genome.fa.s23.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  124  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41405723--41405794	37	1.9	37	94	0	126	31	13	12	41	1.82
41409354--41409380	13	2.1	13	100	0	54	55	14	0	29	1.40
41411741--41411773	16	2.1	16	88	11	50	21	0	3	75	0.93
41411871--41411908	19	2.1	18	90	9	60	65	2	0	31	1.06
41411902--41411961	20	3.1	20	83	4	61	53	1	1	43	1.20
41411931--41411965	18	1.9	18	100	0	70	54	0	0	45	0.99
41412468--41412503	15	2.4	15	100	0	72	25	33	13	27	1.94
41419643--41419684	21	2.0	21	95	0	75	42	21	14	21	1.88
41420849--41420881	16	1.9	18	88	11	52	51	18	12	18	1.76
41421442--41421609	43	4.0	43	84	6	209	22	30	19	27	1.98
41440602--41440667	26	2.5	26	78	4	71	37	3	3	56	1.30
41440690--41440741	24	2.3	23	83	6	61	19	5	1	73	1.14
41443928--41444160	44	5.3	44	64	15	140	21	24	22	32	1.98
41443837--41444172	88	3.9	87	88	3	462	22	24	22	31	1.98
41448801--41448846	19	2.4	19	85	7	58	43	15	21	19	1.87
41451125--41451173	20	2.3	21	80	16	57	65	0	8	26	1.20
41454533--41454575	13	3.3	13	83	9	52	72	0	11	16	1.13
41454529--41454575	17	2.7	18	86	6	69	72	0	10	17	1.12
41454541--41454575	9	4.0	9	88	7	54	71	0	11	17	1.14
41455935--41456043	45	2.4	45	89	3	166	18	18	20	43	1.89
41455920--41456043	45	2.5	50	76	17	134	17	19	20	41	1.90
41456224--41456258	18	1.9	18	94	0	61	37	14	14	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41468311--41468523	26	8.2	26	94	0	372	33	7	24	35	1.82
41470009--41470061	26	2.0	26	85	7	72	37	22	15	24	1.92
41473338--41473469	62	2.1	61	81	5	149	29	30	9	31	1.88
41480028--41480066	18	2.3	18	86	8	55	43	12	5	38	1.65
41480223--41480253	15	2.1	15	100	0	62	22	32	6	38	1.80
41483592--41483621	15	2.0	15	93	0	51	23	46	6	23	1.75
41484363--41484401	18	2.3	18	86	8	55	43	12	5	38	1.65
41484558--41484588	15	2.1	15	100	0	62	22	32	6	38	1.80
41493129--41493175	5	9.8	5	78	17	55	61	0	0	38	0.96
41493130--41493175	8	6.0	8	80	10	60	63	0	0	36	0.95
41493160--41493201	20	2.2	20	79	16	52	54	2	0	42	1.13
41495609--41495650	21	2.0	21	90	9	68	33	0	7	59	1.25
41495946--41496000	16	3.4	16	84	0	65	29	27	7	36	1.84
41507887--41507963	25	3.2	25	90	5	124	48	16	23	11	1.79
41514171--41514211	21	1.9	22	85	5	57	41	0	4	53	1.22
41514304--41514361	5	11.6	5	100	0	116	39	0	0	60	0.97
41515182--41515306	23	5.6	22	85	6	92	45	37	0	16	1.53
41515178--41515306	7	17.4	7	85	7	159	44	38	0	15	1.52
41515178--41515306	15	8.7	14	83	9	159	44	38	0	15	1.52
41516207--41516322	45	2.6	44	83	6	153	19	17	17	45	1.85
41516497--41516767	18	14.6	18	73	10	170	36	11	15	36	1.84
41516485--41516767	36	7.7	35	72	10	197	36	11	15	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41526875--41526997	61	2.0	61	95	0	219	47	8	17	25	1.77
41536948--41537032	44	1.9	44	85	0	116	37	24	20	17	1.93
41540229--41540256	13	2.2	13	100	0	56	39	32	0	28	1.57
41550407--41550622	39	5.5	39	96	1	371	28	29	23	18	1.98
41555547--41555603	15	3.9	15	88	2	89	35	0	12	52	1.39
41559997--41560025	8	3.6	8	100	0	58	37	0	0	62	0.96
41560048--41560108	5	12.4	5	96	3	115	40	0	0	59	0.98
41561379--41561435	15	3.9	15	88	2	89	35	0	12	52	1.39
41561819--41561893	21	3.4	23	82	15	97	12	22	26	38	1.89
41570139--41570185	23	2.0	24	83	4	60	19	29	31	19	1.96
41574354--41574392	16	2.4	17	87	12	64	53	28	5	12	1.60
41574354--41574398	16	2.8	16	81	18	58	53	26	6	13	1.64
41575945--41576046	29	3.6	29	85	1	134	26	15	30	27	1.96
41575945--41576055	58	1.9	57	87	1	159	27	15	30	27	1.96
41578720--41578897	27	6.6	27	83	3	205	26	15	28	29	1.96
41578721--41578876	82	1.9	81	88	3	233	26	15	28	29	1.96
41578717--41578897	82	2.2	81	83	2	229	27	15	27	29	1.96
41589747--41589771	5	5.0	5	100	0	50	20	0	0	80	0.72
41589904--41589963	26	2.3	26	100	0	120	41	6	3	48	1.46
41594265--41594316	6	8.7	6	75	8	52	76	3	1	17	1.02
41614570--41614602	17	1.9	17	88	11	50	27	18	12	42	1.85
41619041--41619126	23	3.7	22	79	13	91	30	20	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41620410--41620529	43	2.8	42	75	6	116	30	25	14	30	1.94
41628290--41628322	17	1.9	17	93	0	57	27	27	24	21	1.99
41634465--41634648	40	4.6	40	86	8	250	23	23	28	24	2.00
41651956--41652182	46	4.8	48	72	13	159	30	17	28	23	1.97
41655873--41655974	37	2.8	37	77	3	116	20	9	28	41	1.84
41658336--41658395	30	2.0	30	96	0	111	36	18	16	28	1.93
41662107--41662457	46	7.4	46	74	11	198	28	18	28	24	1.98
41667964--41668011	21	2.3	21	100	0	96	16	43	25	14	1.86
41667964--41668017	21	2.6	21	93	0	81	16	40	27	14	1.88
41672874--41672917	21	2.1	21	100	0	88	31	18	9	40	1.81
41674190--41674311	62	2.0	62	95	0	217	40	22	4	32	1.75
41681252--41681301	26	1.9	26	91	0	82	30	14	10	46	1.77
41689954--41690256	40	7.6	40	89	3	380	27	28	20	24	1.99
41697945--41698209	40	6.7	40	85	5	286	26	27	21	24	1.99
41697912--41698209	80	3.7	80	79	9	263	25	27	21	25	1.99
41698141--41698218	40	1.9	41	82	10	97	26	28	20	24	1.99
41701219--41701249	15	2.1	15	100	0	62	48	19	25	6	1.72
41712015--41712275	44	5.7	44	72	15	143	36	11	16	36	1.84
41711966--41712165	100	2.0	100	100	0	400	37	12	16	35	1.85
41712102--41712265	88	1.9	88	84	2	222	35	10	14	39	1.81
41713520--41713711	40	4.8	40	86	0	276	25	26	22	26	2.00
41714926--41715004	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41715123--41715300	47	3.7	47	87	4	241	28	30	8	32	1.87
41715123--41715300	96	1.9	94	85	4	250	28	30	8	32	1.87
41719542--41719568	13	2.1	13	100	0	54	14	29	33	22	1.94
41728535--41728728	43	4.5	43	84	1	219	28	13	25	31	1.94
41735083--41735187	43	2.4	43	98	0	201	32	14	16	37	1.88
41737281--41737437	43	3.7	42	75	5	129	29	17	25	28	1.97
41747218--41747325	51	2.1	51	82	0	126	30	19	11	38	1.86
41750188--41750221	6	5.7	6	92	0	59	38	32	17	11	1.86
41753807--41753883	38	2.0	38	100	0	154	40	18	18	23	1.91
41761717--41761957	80	3.0	80	98	0	455	47	12	6	34	1.66
41763635--41763694	29	2.1	29	90	0	93	53	1	0	45	1.10
41774021--41774500	240	2.0	240	97	0	906	26	21	16	36	1.93
41786103--41786127	10	2.5	10	100	0	50	12	8	16	64	1.49
41790692--41790716	13	1.9	13	100	0	50	32	16	16	36	1.90
41792591--41792669	25	3.3	25	69	16	85	35	3	29	31	1.75
41792566--41792719	47	3.3	47	93	0	272	34	7	29	29	1.84
41794560--41794797	40	5.9	40	78	3	246	23	23	27	26	2.00
41794602--41794800	80	2.5	80	94	0	335	23	22	27	26	1.99
41794560--41794795	120	2.0	120	84	1	312	23	22	27	26	2.00
41794788--41794871	43	2.0	43	87	0	123	16	22	28	32	1.96
41794793--41794888	43	2.2	43	84	0	120	17	20	29	32	1.96
41795020--41795139	58	2.1	57	86	6	165	24	15	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41797300--41797324	13	1.9	13	100	0	50	32	16	16	36	1.90
41816426--41816462	10	3.5	11	82	10	51	8	10	8	72	1.27
41816426--41816475	21	2.4	21	83	9	59	6	12	6	76	1.16
41824154--41824213	24	2.5	24	86	0	84	31	30	15	23	1.95
41831003--41831224	46	4.8	46	85	8	308	29	29	19	21	1.98
41831010--41831178	93	1.8	93	94	2	304	28	29	20	21	1.98
41838961--41838993	15	2.2	15	94	0	57	54	3	6	36	1.41
41839076--41839106	16	1.9	16	100	0	62	38	12	12	35	1.82
41839205--41839236	15	2.1	15	100	0	64	53	9	6	31	1.58
41856398--41856438	19	2.2	18	91	8	64	70	0	29	0	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167