genome.fa.s23.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  106  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35269930--35269977	24	2.0	24	83	0	60	0	25	4	70	1.04
35269951--35270014	15	4.2	15	77	15	60	1	20	1	76	0.95
35269941--35270024	6	13.7	6	73	17	57	1	17	2	78	0.92
35269941--35270018	24	3.2	23	82	12	84	1	19	1	78	0.90
35269958--35269999	17	2.5	17	85	11	52	0	19	2	78	0.86
35269946--35270018	13	5.5	13	70	15	60	1	19	1	78	0.91
35272611--35272654	21	2.1	21	91	0	70	15	25	22	36	1.94
35276387--35276427	13	3.2	12	83	12	55	68	0	2	29	1.03
35276730--35276760	14	2.2	14	94	0	53	67	0	0	32	0.91
35276732--35276768	19	2.0	18	94	5	65	67	0	0	32	0.91
35276743--35276875	62	2.2	63	82	10	161	63	5	4	26	1.34
35276743--35276881	60	2.2	62	81	10	160	64	5	4	25	1.32
35277148--35277183	18	2.0	18	94	0	63	16	0	58	25	1.38
35277199--35277265	29	2.3	29	84	7	82	17	1	47	32	1.57
35277165--35277236	37	1.9	37	97	0	135	19	0	51	29	1.47
35280093--35280119	13	2.1	13	100	0	54	14	37	33	14	1.88
35286301--35286521	111	2.0	111	90	0	343	35	11	13	39	1.81
35287980--35288017	19	2.0	20	85	15	53	39	23	0	36	1.55
35288291--35288376	46	1.9	45	88	4	129	30	29	19	20	1.97
35288788--35288847	30	2.0	30	90	0	93	30	25	8	36	1.85
35297955--35297992	19	2.0	20	85	15	53	39	23	0	36	1.55
35298221--35298390	93	1.8	93	94	0	304	27	28	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35298217--35298389	46	3.7	46	80	13	219	28	27	21	22	1.99
35298812--35298871	30	2.0	30	90	0	93	30	25	8	36	1.85
35300444--35300507	30	2.1	30	88	11	96	54	0	23	21	1.45
35303210--35303257	17	2.8	17	70	0	51	35	0	0	64	0.94
35303448--35303486	19	2.0	20	90	5	62	20	0	7	71	1.10
35303467--35303512	25	1.9	23	86	8	65	28	0	8	63	1.24
35304846--35305188	171	2.0	171	95	1	616	52	8	4	35	1.51
35305418--35305451	17	2.0	17	88	0	50	35	5	2	55	1.39
35308905--35308976	36	2.0	36	97	0	135	41	12	22	23	1.88
35311142--35311259	61	1.9	61	100	0	236	31	7	26	34	1.84
35313041--35313158	43	2.7	43	85	5	166	30	13	23	32	1.93
35318343--35318462	59	2.0	59	96	0	222	32	8	24	35	1.85
35320063--35320171	31	3.5	31	94	0	191	26	25	17	30	1.97
35320195--35320286	42	2.2	42	86	0	130	34	19	14	31	1.91
35320424--35320554	26	5.2	26	84	2	171	27	21	21	29	1.98
35320424--35320554	52	2.6	51	91	4	205	27	21	21	29	1.98
35320604--35320670	20	3.3	20	89	4	100	31	17	10	40	1.84
35321147--35321209	27	2.2	29	83	10	78	26	6	20	46	1.75
35321200--35321358	27	5.9	27	77	4	142	30	10	20	38	1.86
35321347--35321405	27	2.2	26	82	11	75	37	5	23	33	1.77
35321357--35321410	27	2.0	27	92	0	90	37	3	25	33	1.74
35326606--35326770	43	3.8	44	73	7	133	30	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35332464--35332511	21	2.2	22	85	7	62	27	31	27	14	1.95
35348539--35348689	42	3.6	42	76	7	135	27	23	16	32	1.96
35349891--35350001	43	2.6	43	76	7	102	29	19	22	27	1.98
35353355--35353590	48	4.9	48	78	8	230	25	27	18	27	1.98
35361155--35361263	37	2.9	37	95	0	191	26	31	19	22	1.98
35361426--35361558	50	2.7	50	92	1	223	28	24	9	36	1.87
35361518--35361632	47	2.5	47	85	2	153	24	31	13	31	1.93
35361552--35361661	47	2.3	47	84	0	139	28	30	8	32	1.86
35365452--35365501	21	2.4	21	89	0	73	32	16	18	34	1.92
35365638--35365705	28	2.4	28	85	2	82	23	32	19	25	1.97
35380676--35380798	43	2.9	43	78	10	162	28	23	16	31	1.96
35383373--35383483	43	2.6	43	78	7	118	24	17	26	32	1.96
35384075--35384136	22	2.5	26	77	17	69	25	1	20	51	1.57
35384464--35384494	12	2.6	12	100	0	62	0	22	51	25	1.48
35395470--35395511	19	2.2	19	87	8	59	30	0	2	66	1.04
35395551--35395621	22	3.3	22	66	28	62	32	0	22	45	1.53
35395543--35395629	42	2.1	42	97	0	165	31	0	22	45	1.53
35397907--35397948	19	2.2	19	87	8	59	30	0	2	66	1.04
35397988--35398058	22	3.3	22	66	28	62	32	0	22	45	1.53
35397980--35398066	42	2.1	42	97	0	165	31	0	22	45	1.53
35413345--35413566	47	4.8	47	74	12	201	29	18	27	23	1.98
35413348--35413575	46	4.9	48	76	10	188	29	19	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35415993--35416034	21	2.0	21	95	0	75	35	14	19	30	1.91
35421561--35421621	32	1.9	32	100	0	122	36	19	14	29	1.92
35425988--35426061	31	2.5	30	84	6	114	17	16	8	58	1.62
35432624--35432653	10	3.0	10	95	0	51	43	30	26	0	1.55
35433215--35433262	18	2.7	18	83	3	53	70	2	0	27	0.98
35438046--35438111	29	2.3	28	79	7	80	18	12	1	68	1.28
35442069--35442106	20	1.9	20	100	0	76	26	7	10	55	1.61
35456112--35456143	13	2.3	15	89	10	50	37	6	34	21	1.79
35461099--35461281	40	4.4	41	77	11	160	26	16	26	30	1.97
35461091--35461281	83	2.3	81	79	7	206	25	16	26	31	1.96
35464826--35465065	120	2.0	120	99	0	471	32	20	9	37	1.84
35465555--35465600	20	2.3	20	80	0	56	17	2	2	78	0.96
35466516--35466944	213	2.0	213	89	1	655	34	15	21	28	1.94
35469582--35469630	21	2.3	21	85	0	62	18	6	16	59	1.57
35472188--35472235	14	3.4	14	82	5	62	81	2	16	0	0.79
35480021--35480135	49	2.3	50	85	4	153	28	28	17	25	1.97
35490993--35491046	27	2.0	27	85	7	74	37	12	9	40	1.76
35499936--35499980	22	2.0	22	91	0	72	33	2	15	48	1.57
35507969--35508003	18	2.0	18	88	5	54	22	17	0	60	1.37
35510744--35510969	48	4.7	48	82	6	287	25	28	19	26	1.99
35511434--35511472	19	2.1	18	85	9	51	33	20	0	46	1.51
35513757--35513801	19	2.4	19	84	0	63	31	20	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35514632--35514676	20	2.2	20	88	0	63	37	8	2	51	1.46
35524192--35524229	19	2.0	20	89	5	60	26	21	15	36	1.93
35527865--35527942	38	2.1	38	95	0	138	35	33	0	30	1.58
35533584--35533676	43	2.2	43	98	0	177	35	8	16	39	1.79
35540450--35540506	9	6.3	9	78	8	62	19	36	0	43	1.51
35544482--35544565	28	3.0	29	80	5	100	28	14	26	30	1.95
35544471--35544546	29	2.7	29	85	2	100	26	17	27	28	1.97
35545749--35545794	21	2.2	21	84	7	58	17	34	21	26	1.95
35546468--35546508	21	2.0	20	86	13	57	17	12	19	51	1.76
35548241--35548279	16	2.4	16	84	12	53	17	0	2	79	0.84
35549459--35549497	21	1.9	20	84	5	51	15	10	23	51	1.73
35551176--35551228	25	2.2	25	83	6	65	49	26	0	24	1.51
35551641--35551690	15	3.4	15	72	10	50	52	2	0	46	1.12
35552920--35553381	231	2.0	231	99	0	915	26	16	19	36	1.93
35553424--35553457	17	1.9	18	94	5	61	2	11	0	85	0.71
35554107--35554162	24	2.3	24	93	0	94	46	7	19	26	1.76
35554783--35554821	14	2.8	14	88	7	53	71	5	0	23	1.05
35558213--35558692	208	2.3	212	93	3	815	43	7	10	38	1.67
35560865--35561087	39	5.7	40	84	8	248	25	26	21	26	2.00
35560865--35561087	118	1.9	119	81	11	280	25	26	21	26	2.00
35560865--35561087	79	2.8	79	82	9	226	25	26	21	26	2.00
35566384--35566643	45	5.9	45	78	6	248	32	27	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35568078--35568138	30	2.0	30	87	6	88	36	8	26	29	1.85
35568554--35568689	47	2.9	46	87	8	204	24	19	27	28	1.99
35573663--35573749	24	3.5	24	78	7	77	28	21	12	36	1.90
35580644--35580710	34	2.0	34	90	0	107	29	4	22	43	1.73
35581662--35581705	22	2.0	22	100	0	88	31	9	27	31	1.88
35585035--35585209	46	3.8	46	77	17	191	29	29	19	21	1.97
35585043--35585213	93	1.8	93	91	2	281	29	29	19	21	1.98
35585040--35585229	46	4.1	45	73	16	147	29	29	19	21	1.98
35591700--35591760	30	2.0	30	87	0	86	27	24	9	37	1.87
35596568--35596629	17	3.8	16	80	6	61	30	20	8	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167