genome.fa.s23.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  153  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50436623--50436669	23	2.0	23	100	0	94	46	17	8	27	1.76
50440770--50440838	27	2.5	28	83	6	97	33	2	2	60	1.26
50452415--50452539	64	2.0	64	95	0	223	31	16	15	37	1.89
50452608--50452721	45	2.6	45	85	1	149	29	19	21	28	1.98
50452829--50453122	131	2.2	131	92	0	489	29	19	20	30	1.97
50455347--50455451	18	5.5	18	71	16	68	15	23	23	37	1.93
50455349--50455449	39	2.6	39	93	0	175	13	24	22	38	1.91
50463256--50463356	39	2.6	40	90	4	161	15	23	20	39	1.91
50463254--50463358	19	5.5	18	68	16	68	17	22	21	38	1.93
50465785--50465853	27	2.5	28	83	6	97	31	4	4	59	1.37
50466055--50466096	18	2.3	18	80	12	50	35	4	7	52	1.50
50468502--50468836	44	7.6	44	68	15	136	31	20	22	24	1.98
50468408--50468955	132	4.1	132	88	1	713	31	20	22	25	1.98
50468410--50469219	132	6.1	131	83	3	700	31	20	22	25	1.98
50468487--50469282	267	3.0	266	79	5	578	31	20	21	25	1.98
50470667--50470912	3	82.3	3	67	13	71	29	6	3	60	1.39
50470667--50470714	19	2.5	19	87	9	71	31	4	0	64	1.12
50470777--50470814	20	1.9	20	88	0	58	36	2	5	55	1.37
50471067--50471125	25	2.3	27	82	5	77	27	3	3	66	1.24
50474513--50474561	21	2.2	21	82	7	53	18	14	6	61	1.53
50474960--50474997	20	1.9	20	89	10	60	21	21	0	57	1.40
50475061--50475235	20	8.7	20	68	20	84	16	16	8	59	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50475047--50475127	40	2.0	41	85	9	112	18	16	7	58	1.61
50475100--50475149	24	2.1	24	85	7	66	18	12	6	64	1.47
50475121--50475234	56	2.0	57	84	5	151	14	14	8	62	1.54
50478751--50479481	365	2.0	365	97	0	1390	25	25	15	34	1.95
50480132--50480163	5	6.6	5	92	7	57	81	0	0	18	0.70
50480133--50480163	9	3.3	9	95	4	53	80	0	0	19	0.71
50480465--50480537	20	3.7	18	77	16	67	21	15	9	53	1.70
50480851--50480901	25	2.1	25	88	3	77	29	25	11	33	1.91
50484267--50484341	30	2.6	29	81	10	91	54	6	0	38	1.27
50490543--50490770	46	5.0	46	93	1	332	40	14	23	21	1.90
50492313--50492343	15	2.1	15	93	0	53	22	9	16	51	1.73
50493761--50493788	5	5.6	5	100	0	56	82	0	0	17	0.68
50494251--50494296	25	1.9	25	82	8	60	30	15	0	54	1.41
50494558--50494679	46	2.7	46	89	2	183	18	23	15	42	1.88
50494648--50494719	38	1.9	37	91	2	117	25	25	16	33	1.96
50494764--50495170	54	7.5	54	99	0	805	31	22	18	27	1.97
50498014--50498051	20	1.9	20	88	0	58	10	36	31	21	1.87
50503552--50503775	104	2.2	104	93	1	378	17	19	31	31	1.95
50503694--50503845	71	2.1	72	92	1	252	23	17	29	30	1.97
50511110--50511333	104	2.2	104	93	1	378	17	19	31	31	1.95
50511252--50511403	71	2.1	72	92	1	252	23	17	29	30	1.97
50513674--50513701	5	5.6	5	100	0	56	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50514064--50514124	30	2.0	30	100	0	122	9	13	31	45	1.75
50515311--50515351	21	2.0	21	90	0	64	26	12	9	51	1.70
50516101--50516130	15	2.0	15	93	0	51	36	13	26	23	1.92
50537411--50537469	27	2.2	27	84	3	84	61	1	5	32	1.28
50537405--50537468	19	3.5	18	75	12	60	60	1	4	32	1.26
50537768--50537820	20	2.7	19	82	8	61	33	7	1	56	1.38
50537794--50537842	25	1.9	26	83	4	64	28	10	0	61	1.29
50539133--50539215	22	3.9	21	71	6	67	61	12	8	18	1.55
50548648--50548703	28	2.0	28	100	0	112	46	14	14	25	1.82
50549162--50549233	32	2.2	32	85	0	99	31	16	8	43	1.78
50549745--50549794	23	2.2	23	88	0	73	46	12	12	30	1.77
50550375--50550420	10	4.6	10	78	10	58	21	10	2	65	1.35
50553094--50553576	54	8.9	54	76	5	285	39	12	17	29	1.87
50553066--50553571	108	4.7	107	76	6	362	39	12	18	29	1.88
50553094--50553579	162	3.0	159	77	5	440	39	13	17	29	1.88
50553901--50553939	18	2.2	18	86	9	53	20	0	12	66	1.24
50553940--50553973	12	2.8	12	90	0	50	67	0	0	32	0.91
50554140--50554244	54	1.9	54	82	3	131	36	13	20	29	1.91
50555865--50556236	42	8.8	42	92	2	604	32	21	22	23	1.98
50555865--50556274	169	2.4	169	90	2	610	31	20	21	25	1.98
50555865--50556284	42	10.0	43	87	3	373	31	20	21	26	1.98
50559372--50559656	114	2.5	115	81	2	315	31	22	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50560161--50560334	7	25.1	7	66	15	51	39	39	4	17	1.68
50560240--50560311	21	3.1	21	76	19	72	38	44	4	12	1.62
50560240--50560296	27	2.1	27	100	0	114	38	47	3	10	1.55
50560766--50560903	73	1.9	72	86	4	197	30	19	21	28	1.98
50560803--50561129	113	2.9	114	83	2	372	30	22	20	25	1.98
50561097--50561248	39	3.8	39	79	3	144	22	19	21	36	1.95
50561483--50561524	16	2.6	16	96	0	75	19	19	54	7	1.66
50562666--50562702	11	3.2	12	85	11	51	56	5	5	32	1.45
50565475--50565508	17	2.0	17	88	0	50	64	0	0	35	0.94
50566367--50566423	19	2.9	19	78	2	60	35	0	5	59	1.20
50566365--50566436	20	3.5	20	79	5	74	31	0	5	62	1.18
50580936--50580999	33	2.0	32	90	3	101	39	25	9	26	1.86
50597384--50597410	13	2.1	13	100	0	54	14	29	33	22	1.94
50599588--50599784	41	4.8	41	92	5	317	28	20	22	27	1.99
50600015--50600079	33	2.0	33	81	0	76	29	9	26	35	1.87
50605711--50605735	13	1.9	13	100	0	50	8	0	24	68	1.16
50607274--50607429	41	3.8	41	89	6	235	28	20	22	28	1.98
50607660--50607724	33	2.0	33	81	0	76	29	9	26	35	1.87
50611852--50611927	20	3.8	20	75	1	71	57	10	7	23	1.58
50611899--50611956	21	2.8	21	75	0	62	56	17	8	17	1.64
50612487--50612520	16	2.1	16	88	0	50	23	14	20	41	1.89
50612808--50612832	12	2.1	12	100	0	50	20	16	8	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50617648--50617701	27	2.0	27	92	0	90	33	14	18	33	1.92
50620672--50620709	15	2.4	16	86	4	51	36	2	18	42	1.64
50622337--50622376	2	20.0	2	100	0	80	0	50	0	50	1.00
50627490--50627525	16	2.2	16	90	0	54	36	0	8	55	1.30
50628879--50628912	17	1.9	17	88	5	50	2	17	32	47	1.63
50637211--50637253	13	3.1	14	84	12	54	60	0	0	39	0.97
50646032--50646096	31	2.1	31	97	0	121	32	33	9	24	1.87
50646322--50646386	31	2.1	31	100	0	130	32	35	9	23	1.86
50645957--50646542	290	2.0	290	97	0	1118	30	23	10	35	1.88
50649164--50649212	3	16.3	3	95	0	89	34	0	2	63	1.06
50657251--50657313	31	2.0	32	87	9	94	55	3	1	39	1.25
50658790--50658829	17	2.4	17	83	4	55	37	0	2	60	1.11
50661244--50661351	47	2.6	39	75	20	117	12	25	24	37	1.91
50666880--50666922	22	2.0	22	86	9	61	69	0	2	27	1.00
50666905--50666950	24	2.0	22	83	8	56	60	0	8	30	1.26
50678859--50679046	17	11.1	17	78	2	162	25	7	21	46	1.77
50678861--50679046	34	5.5	34	82	0	201	24	7	21	46	1.77
50678861--50679047	68	2.8	68	84	1	223	24	7	21	45	1.77
50678859--50679040	51	3.6	51	78	5	188	24	7	20	47	1.75
50680116--50680161	23	2.0	23	95	0	83	36	0	17	45	1.49
50683168--50683426	48	5.2	49	82	8	294	27	14	27	31	1.95
50683168--50683461	48	6.1	48	80	10	284	27	14	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50683172--50683426	97	2.6	96	84	8	309	27	14	27	31	1.95
50683369--50683479	42	2.6	42	91	2	170	29	12	27	29	1.93
50683382--50683496	42	2.7	42	89	4	169	29	14	27	27	1.95
50694358--50694455	48	2.0	48	94	3	171	26	7	20	45	1.76
50696106--50696187	42	2.0	42	85	0	110	45	13	20	20	1.85
50699505--50699564	3	19.7	3	96	3	111	31	1	0	66	1.01
50699674--50699717	21	2.2	20	84	12	54	20	6	2	70	1.21
50711874--50711930	12	4.4	14	89	10	63	64	0	1	33	1.04
50711891--50711927	3	12.3	3	100	0	74	64	0	0	35	0.94
50714878--50714914	19	1.9	19	88	0	56	29	10	18	40	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167