genome.fa.s23.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  56  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17469201--17469917	354	2.0	353	94	0	1256	51	6	7	33	1.56
17470728--17470774	8	6.0	8	75	5	51	34	27	4	34	1.77
17474044--17474243	81	2.5	78	81	9	240	26	27	22	24	1.99
17474045--17474229	41	4.6	41	83	4	225	26	27	22	24	2.00
17476495--17476829	158	2.1	157	82	6	410	30	22	12	34	1.91
17477615--17477657	14	3.0	15	86	6	54	41	34	0	23	1.55
17477624--17477664	14	2.9	14	88	3	55	39	43	0	17	1.49
17477783--17477821	14	2.8	14	88	0	60	46	28	2	23	1.65
17478289--17478378	41	2.2	40	84	5	119	24	25	21	28	1.99
17478365--17478456	40	2.3	40	83	3	105	21	18	20	39	1.93
17487050--17487085	18	2.0	18	89	10	56	41	0	0	58	0.98
17491934--17491980	20	2.3	20	89	7	69	34	21	2	42	1.65
17491944--17491983	12	3.7	12	75	25	52	37	17	0	45	1.49
17492062--17492106	23	1.9	24	90	4	74	22	24	11	42	1.86
17492191--17492429	55	4.5	54	82	8	278	21	24	17	36	1.95
17493436--17493467	16	2.0	16	100	0	64	37	18	18	25	1.94
17499577--17499621	23	1.9	24	90	4	74	22	24	11	42	1.86
17499695--17499949	55	4.8	53	81	6	234	21	25	17	35	1.95
17499742--17499942	108	1.8	110	89	4	318	22	25	17	33	1.96
17509666--17509719	23	2.3	23	93	0	90	12	22	35	29	1.91
17512144--17512175	2	16.0	2	100	0	64	50	50	0	0	1.00
17512186--17512261	40	1.9	40	83	5	100	34	28	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17518827--17519024	55	3.7	53	75	4	146	37	20	23	19	1.94
17518827--17519031	53	3.8	54	76	4	198	37	19	23	20	1.95
17519021--17519124	49	2.1	49	98	1	201	34	9	21	34	1.86
17527326--17527385	28	2.2	27	81	3	66	23	10	13	53	1.69
17533137--17533395	55	4.8	55	77	6	269	18	22	20	38	1.93
17533142--17533382	53	4.5	53	78	7	252	19	21	21	37	1.94
17533142--17533395	108	2.4	108	97	0	481	18	22	20	38	1.93
17536511--17536679	77	2.2	75	77	4	169	24	21	18	34	1.96
17541718--17541759	22	2.0	22	95	4	77	14	45	23	16	1.84
17542811--17542956	28	5.2	29	81	6	167	39	11	23	26	1.89
17549275--17549316	19	2.2	19	95	0	75	23	9	26	40	1.85
17550052--17550082	16	1.9	16	93	0	53	12	6	9	70	1.31
17550765--17550790	13	2.0	13	100	0	52	76	0	23	0	0.78
17554903--17554955	27	2.0	27	85	7	72	32	24	24	18	1.97
17555337--17555395	27	2.2	27	81	6	66	32	22	20	25	1.98
17555361--17555413	27	2.0	27	88	7	81	28	15	20	35	1.93
17558626--17558777	27	5.7	27	77	9	116	41	20	6	31	1.78
17558678--17558830	27	5.7	27	69	6	96	38	18	9	33	1.82
17558618--17558792	54	3.3	53	77	5	140	40	20	7	32	1.80
17558815--17558940	27	4.7	27	80	0	135	34	20	18	26	1.96
17558932--17558983	27	2.0	26	84	3	68	26	23	19	30	1.98
17559562--17560059	96	5.2	96	100	0	996	19	26	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17566709--17566859	27	5.6	27	75	7	119	40	20	7	31	1.81
17566702--17566877	54	3.3	53	76	4	156	38	20	9	32	1.84
17566702--17566806	53	2.0	54	84	5	142	40	22	7	29	1.82
17566898--17567004	27	4.0	27	90	0	160	35	18	20	25	1.95
17573691--17573734	17	2.6	17	96	0	79	25	11	27	36	1.90
17580898--17580945	21	2.2	21	82	13	62	8	0	16	75	1.04
17582615--17582661	19	2.5	19	89	0	67	17	42	21	19	1.89
17584600--17584658	29	2.0	29	100	0	118	25	27	6	40	1.80
17587340--17587641	153	2.0	153	95	0	541	29	19	15	35	1.93
17593933--17594067	40	3.4	40	80	4	146	26	26	22	24	2.00
17594047--17594087	20	2.0	20	100	0	82	39	19	17	24	1.92
17594015--17594127	60	1.9	60	94	0	199	29	25	21	23	1.99
17599152--17599248	27	3.6	27	91	2	149	29	28	14	26	1.95
17603905--17603953	25	2.0	25	95	0	89	26	20	10	42	1.84
17604675--17604925	48	5.5	48	77	9	224	25	26	19	28	1.99
17604675--17604890	96	2.3	96	83	7	277	25	26	20	27	1.99
17604859--17604941	42	2.0	42	87	0	121	27	27	16	27	1.97
17607151--17607219	23	3.0	23	85	10	79	24	18	18	37	1.94
17607387--17607452	20	3.3	20	85	2	89	28	6	24	40	1.79
17611951--17612019	23	3.0	23	85	10	79	24	18	18	37	1.94
17612187--17612252	20	3.3	20	85	2	89	28	6	24	40	1.79
17629958--17630007	24	2.1	24	92	0	82	54	14	2	30	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17630140--17630383	90	2.7	91	86	1	323	34	13	24	27	1.93
17630151--17630428	90	3.1	88	77	9	249	35	14	21	28	1.93
17634092--17634125	16	2.1	16	88	0	50	17	11	11	58	1.62
17640190--17640291	51	2.0	51	96	3	190	50	5	19	23	1.69
17642051--17642110	27	2.2	27	87	0	84	18	21	33	26	1.96
17644337--17644397	30	2.0	30	96	0	113	19	24	9	45	1.80
17645254--17645304	18	2.8	18	81	0	66	45	11	5	37	1.65
17645309--17645372	18	3.6	18	80	0	74	31	12	18	37	1.88
17647613--17647754	78	1.9	76	83	5	189	54	10	7	26	1.61
17647949--17648030	33	2.5	32	84	7	101	29	14	43	12	1.82
17648015--17648091	38	2.0	38	85	5	102	29	9	44	16	1.79
17648820--17648872	23	2.3	23	96	0	97	43	7	18	30	1.78
17649412--17649555	72	2.0	72	91	0	234	33	10	20	36	1.86
17650776--17650949	48	3.6	48	87	1	233	24	20	29	25	1.99
17650776--17650949	97	1.8	95	87	5	260	24	20	29	25	1.99
17650822--17650985	48	3.4	47	85	4	134	26	19	28	26	1.99
17651773--17651876	54	1.9	54	88	0	154	23	18	17	41	1.90
17656128--17656162	8	4.4	8	88	0	52	51	20	22	5	1.68
17656374--17656434	29	2.1	29	91	8	99	31	13	26	29	1.93
17656386--17656520	29	4.7	29	80	5	125	27	14	31	26	1.95
17657708--17657795	30	2.9	29	91	3	131	11	27	38	22	1.88
17675036--17675060	9	2.8	9	100	0	50	24	0	20	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17675212--17675297	42	2.0	42	93	0	145	37	15	20	26	1.92
17675562--17675686	47	2.7	46	86	4	162	21	15	28	34	1.94
17680104--17680275	54	3.2	54	86	0	227	29	20	7	41	1.80
17680128--17680275	27	5.5	27	87	0	206	27	21	7	43	1.79
17680263--17680431	27	6.2	27	78	11	132	40	22	7	30	1.81
17680117--17680312	81	2.4	81	77	1	205	31	20	7	39	1.81
17680263--17680431	54	3.1	55	77	7	175	40	22	7	30	1.81
17680280--17680516	27	8.7	27	78	6	156	39	19	9	31	1.83
17681420--17681486	25	2.7	25	78	0	71	28	26	20	23	1.99
17681709--17681790	31	2.7	31	92	3	132	30	15	24	29	1.96
17688241--17689152	40	22.8	40	98	0	1727	27	27	22	22	1.99
17695616--17695673	25	2.4	25	88	2	82	31	20	22	25	1.98
17695616--17695687	25	2.9	24	85	4	81	29	22	22	26	1.99
17705619--17705771	43	3.6	43	76	5	130	29	24	18	27	1.98
17723271--17723352	42	2.0	42	83	9	105	24	18	23	34	1.96
17737326--17737510	40	4.7	40	78	9	157	24	23	25	25	2.00
17742011--17742058	23	2.1	23	84	7	62	43	14	8	33	1.75
17752412--17752459	23	2.1	23	84	7	62	39	16	8	35	1.79
17758319--17758350	6	4.9	7	88	11	50	62	0	0	37	0.95
17761023--17761180	47	3.4	47	74	15	182	30	30	18	20	1.97
17760966--17761230	93	2.8	93	94	1	442	30	30	18	20	1.97
17760958--17761216	46	5.6	46	72	16	221	30	30	17	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17763564--17763603	20	2.0	20	100	0	80	30	20	10	40	1.85
17763674--17763718	15	3.0	15	78	12	56	57	17	15	8	1.63
17769508--17769664	43	3.7	43	78	9	144	29	26	18	24	1.98
17773354--17773385	16	2.0	16	100	0	64	0	25	0	75	0.81
17779158--17779204	23	2.0	23	100	0	94	31	21	21	25	1.98
17780787--17780943	43	3.7	43	78	9	144	29	26	18	24	1.98
17784633--17784664	16	2.0	16	100	0	64	0	25	0	75	0.81
17790471--17790642	93	1.8	93	93	2	301	29	29	20	20	1.98
17790464--17790639	46	3.8	46	78	14	200	30	29	19	20	1.97
17790515--17790658	46	3.1	44	76	15	141	29	28	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167