genome.fa.s113.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  12  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3051808--3051872	22	2.9	24	82	13	77	30	0	6	63	1.19
3051808--3051864	22	2.6	22	88	5	80	31	0	7	61	1.23
3052010--3052050	19	2.2	19	86	0	55	78	4	4	12	1.07
3053003--3053091	26	3.4	26	87	0	106	28	22	28	21	1.99
3053020--3053106	26	3.3	26	83	3	104	31	17	28	22	1.97
3053445--3053659	115	1.9	115	84	3	290	49	13	18	19	1.79
3053852--3053971	41	3.0	41	81	1	134	38	22	10	29	1.87
3062281--3062329	22	2.1	22	88	7	71	59	0	0	40	0.98
3066341--3066384	13	3.2	13	81	12	61	68	0	20	11	1.20
3066388--3066425	18	2.2	18	85	4	51	73	0	21	5	1.02
3066376--3066425	18	2.9	17	80	11	50	74	0	20	6	1.03
3066380--3066456	26	3.0	26	77	19	81	70	0	22	7	1.13
3067709--3068033	46	7.1	46	89	0	434	38	10	12	37	1.78
3067853--3068196	163	2.1	163	88	1	503	38	9	13	38	1.77
3067995--3068196	46	4.3	46	82	5	226	39	9	11	39	1.74
3067709--3068171	92	5.0	89	79	7	380	38	10	12	38	1.78
3067709--3068121	138	3.0	133	79	8	418	39	10	12	37	1.78
3067995--3068201	92	2.2	93	84	6	265	39	9	12	39	1.75
3069875--3069907	10	3.0	11	86	13	50	78	0	0	21	0.75
3069873--3069907	17	2.1	17	94	0	61	77	0	0	22	0.78
3069917--3070144	60	3.8	59	80	12	205	48	5	9	36	1.59
3072364--3072432	12	5.7	12	81	14	79	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3072352--3072433	24	3.5	23	76	15	87	32	0	1	65	1.00
3073895--3073935	5	8.0	5	87	12	57	80	0	2	17	0.82
3073895--3073925	11	2.9	11	95	4	55	80	0	0	19	0.71
3073896--3073936	16	2.5	17	92	7	68	82	0	2	14	0.76
3074765--3074825	19	3.4	19	76	17	60	57	1	1	39	1.18
3082198--3082222	7	3.6	7	100	0	50	16	40	12	32	1.84
3084555--3084598	18	2.4	18	85	14	56	43	0	2	54	1.12
3094260--3094285	1	26.0	1	100	0	52	100	0	0	0	0.00
3098006--3098036	16	1.9	16	93	0	53	32	9	16	41	1.80
3098437--3098513	31	2.4	32	80	10	86	49	22	11	16	1.78
3098453--3098514	31	2.0	31	90	0	97	48	20	9	20	1.78
3101983--3102013	2	15.5	2	100	0	62	51	0	0	48	1.00
3102108--3102144	3	12.3	3	100	0	74	67	0	0	32	0.91
3102170--3102199	3	10.0	3	100	0	60	66	0	0	33	0.92
3102083--3102208	62	2.0	64	92	3	211	53	8	3	34	1.47
3104530--3104595	33	2.0	33	93	0	114	25	25	13	34	1.93
3107384--3107416	17	1.9	17	100	0	66	30	27	12	30	1.92
3112159--3112209	18	2.8	19	79	5	61	27	5	0	66	1.14
3112851--3112888	14	2.7	14	88	8	51	31	0	5	63	1.17
3125038--3125365	156	2.1	156	82	5	389	46	5	8	38	1.58
3127512--3127602	26	3.5	26	80	10	89	48	2	0	49	1.13
3130682--3131235	87	6.4	86	77	4	445	45	16	11	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3130753--3131235	43	11.2	43	76	7	279	47	15	11	25	1.80
3131470--3131534	33	2.0	33	84	6	87	36	23	13	26	1.92
3131851--3132144	79	3.7	79	79	5	276	31	20	8	39	1.82
3132733--3132805	8	9.4	7	73	16	56	10	9	0	79	0.94
3132754--3132805	23	2.3	23	93	6	88	11	7	0	80	0.89
3138969--3139003	16	2.2	16	89	0	52	37	0	0	62	0.95
3139141--3139173	13	2.5	13	90	9	50	36	0	0	63	0.95
3139297--3139343	21	2.4	21	86	10	64	51	0	0	48	1.00
3139333--3139381	24	2.0	24	84	0	62	55	2	2	40	1.23
3139664--3139712	25	2.0	25	88	8	73	46	6	2	44	1.39
3140433--3140490	27	2.2	27	85	11	77	6	29	5	58	1.46
3142179--3142227	19	2.5	19	90	3	71	55	0	0	44	0.99
3144604--3144649	24	2.0	24	83	12	60	54	2	0	43	1.12
3144643--3144680	15	2.4	16	86	4	51	81	2	0	15	0.80
3144772--3144804	6	5.7	6	85	7	50	69	0	0	30	0.88
3144772--3144807	17	2.1	17	94	5	63	69	0	0	30	0.89
3145836--3145892	15	3.5	15	80	9	51	47	0	1	50	1.11
3153515--3153556	2	21.0	2	100	0	84	50	0	0	50	1.00
3168481--3168580	51	2.0	51	97	0	191	25	23	26	26	2.00
3169472--3169505	3	11.7	3	87	6	52	29	0	0	70	0.87
3169688--3169725	2	19.5	2	94	5	69	47	0	0	52	1.00
3170687--3170731	3	15.0	3	95	0	81	64	2	33	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3172094--3172118	6	4.2	6	100	0	50	16	0	0	84	0.63
3174468--3174506	21	1.9	21	89	5	62	28	0	5	66	1.12
3174460--3174511	21	2.7	19	78	16	54	25	0	7	67	1.17
3200903--3200943	19	2.1	19	86	4	55	36	9	0	53	1.34
3200911--3200948	19	2.0	19	89	0	58	36	10	0	52	1.36
3201098--3201254	78	2.0	79	87	7	230	38	3	8	49	1.51
3202727--3202778	11	4.8	11	75	13	54	38	0	0	61	0.96
3202727--3202789	16	3.9	16	79	8	74	38	0	1	60	1.07
3202874--3202905	8	4.0	8	91	0	55	59	0	0	40	0.97
3202855--3202902	16	3.1	16	82	5	64	56	0	0	43	0.99
3208488--3208519	3	10.7	3	100	0	64	68	0	0	31	0.90
3216624--3216657	12	2.8	12	90	4	50	76	2	0	20	0.92
3224021--3224063	3	14.0	3	95	4	77	32	0	0	67	0.91
3225909--3225947	19	2.1	19	85	0	51	10	5	0	84	0.76
3228101--3228126	13	2.0	13	100	0	52	69	0	0	30	0.89
3229433--3229498	6	11.7	6	78	12	61	45	0	1	53	1.09
3229433--3229500	32	2.0	35	88	8	106	45	0	2	51	1.16
3229440--3229519	35	2.3	32	77	12	79	47	1	2	48	1.23
3230933--3230965	17	1.9	17	93	0	57	60	0	0	39	0.97
3232341--3232371	16	1.9	16	93	0	53	32	0	0	67	0.91
3235192--3235235	15	2.9	15	82	0	52	45	34	13	6	1.70
3236048--3236076	10	2.9	10	100	0	58	0	41	6	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3237301--3237335	16	2.1	17	89	5	54	40	0	0	60	0.97
3251434--3251467	16	2.1	17	88	5	52	52	20	11	14	1.73
3266902--3266928	2	13.5	2	100	0	54	51	0	0	48	1.00
3278174--3278199	13	2.0	13	100	0	52	53	0	0	46	1.00
3285195--3285224	2	15.5	2	93	6	53	50	0	0	50	1.00
3311066--3311107	2	21.0	2	100	0	84	0	50	0	50	1.00
3311969--3312020	21	2.5	20	75	9	59	46	0	0	53	1.00
3312004--3312035	12	2.8	12	95	4	57	56	0	0	43	0.99
3321918--3321942	2	12.5	2	100	0	50	52	0	0	48	1.00
3322320--3322354	2	17.5	2	87	0	52	42	0	57	0	0.99
3322845--3322878	10	3.3	11	88	12	54	0	44	0	55	0.99
3326385--3326413	2	15.0	2	92	7	51	51	0	0	48	1.00
3327219--3327248	2	15.0	2	100	0	60	50	0	0	50	1.00
3329946--3329998	27	2.0	27	85	10	74	35	0	20	43	1.52
3340988--3341046	29	2.0	30	86	3	84	52	3	1	42	1.28
3342085--3342202	39	3.0	39	87	0	173	20	15	22	41	1.89
3350713--3351207	202	2.4	202	84	7	560	37	8	5	49	1.56
3350817--3351207	202	1.9	199	89	3	597	38	7	5	49	1.53
3352495--3353009	41	12.6	41	82	5	450	46	15	13	24	1.82
3352497--3353013	123	4.2	123	82	3	522	46	15	14	24	1.82
3352507--3353009	167	3.1	163	80	5	435	47	14	14	23	1.81
3353264--3353302	20	2.0	20	89	0	60	33	20	12	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3353293--3353335	22	2.0	22	81	9	52	37	16	13	32	1.88
3353909--3354140	63	3.7	63	84	3	288	29	26	10	34	1.89
3354841--3354914	16	4.6	15	75	21	53	9	12	0	78	0.97
3354848--3354920	17	4.4	16	76	23	64	9	12	0	78	0.98
3354874--3354927	17	3.1	17	78	17	58	9	14	0	75	1.03
3354841--3354930	23	3.8	23	81	9	101	11	12	0	76	1.02
3359223--3359592	186	2.0	187	90	1	591	38	8	4	48	1.54
3359908--3359942	11	3.1	11	87	4	52	0	14	0	85	0.59
3359913--3359946	11	3.0	12	87	12	54	0	14	0	85	0.60
3360439--3360463	8	3.1	8	100	0	50	12	0	0	88	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100