genome.fa.s113.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  56  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13246527--13246557	16	1.9	16	93	0	53	87	0	3	9	0.66
13247773--13247847	19	3.9	19	71	20	66	32	4	12	52	1.57
13247757--13247860	40	2.6	38	82	11	118	33	3	10	51	1.54
13247802--13247862	20	3.1	20	79	13	81	32	4	11	50	1.60
13247823--13247876	20	3.2	16	80	17	56	33	5	12	48	1.65
13247846--13247884	15	2.6	15	84	8	53	28	7	12	51	1.67
13249083--13249117	10	3.4	10	88	4	52	40	0	0	60	0.97
13249131--13249178	21	2.3	21	88	0	69	25	6	8	60	1.49
13253619--13253667	20	2.5	20	93	0	89	32	14	14	38	1.86
13253910--13254028	44	2.7	43	75	12	107	36	6	13	43	1.70
13253972--13254038	23	3.0	22	74	20	59	31	5	20	41	1.77
13254208--13254240	17	1.9	17	93	0	57	39	18	6	36	1.75
13254233--13254357	17	7.3	17	74	7	83	32	16	12	38	1.86
13254483--13254539	17	3.4	17	70	18	55	36	8	15	38	1.79
13254646--13254705	17	3.5	17	78	12	61	31	15	15	38	1.88
13254609--13254809	17	11.5	18	66	25	53	34	14	11	38	1.84
13255358--13255402	17	2.6	18	82	7	56	20	2	11	66	1.33
13255446--13255490	20	2.4	18	88	7	63	77	4	6	11	1.09
13255446--13255490	19	2.4	19	89	10	67	77	4	6	11	1.09
13256722--13256773	22	2.3	23	83	3	70	32	3	7	55	1.46
13256763--13256859	44	2.4	39	79	17	108	31	4	10	53	1.54
13256808--13256868	20	3.1	20	75	13	72	32	6	11	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13256852--13256890	15	2.6	15	84	8	53	28	7	12	51	1.67
13259165--13259199	18	1.9	18	88	11	54	34	2	0	62	1.10
13259607--13259652	13	3.5	13	91	5	67	47	4	6	41	1.49
13259903--13259944	12	3.3	12	90	6	57	26	2	4	66	1.23
13260886--13260915	8	3.8	8	95	0	51	30	0	0	70	0.88
13265712--13265741	13	2.3	13	94	0	51	16	3	0	80	0.85
13265708--13265776	20	3.4	20	78	11	70	11	7	1	79	0.98
13265758--13265798	16	2.8	16	85	10	52	19	0	4	75	0.98
13265758--13265795	15	2.7	15	88	8	53	18	0	5	76	0.97
13266676--13266710	17	2.2	15	90	10	52	14	0	2	82	0.77
13266917--13266982	16	4.0	17	75	11	66	37	0	0	62	0.96
13272498--13272533	17	2.1	18	90	10	58	22	2	22	52	1.59
13272788--13272844	27	2.1	27	83	0	69	40	7	3	49	1.47
13273326--13273379	22	2.5	22	84	0	63	44	9	9	37	1.69
13273348--13273392	22	2.0	22	91	0	72	40	6	8	44	1.62
13273358--13273520	22	7.5	21	67	10	78	36	4	10	48	1.59
13273578--13273684	22	5.0	22	73	13	80	36	6	3	53	1.45
13273609--13273645	19	1.9	19	88	0	56	40	10	2	45	1.53
13273543--13273665	63	1.9	64	86	3	176	38	9	4	47	1.55
13273651--13273702	22	2.4	22	86	0	68	28	7	3	59	1.43
13273746--13273814	22	3.2	21	76	15	79	43	5	1	49	1.35
13273896--13274078	22	8.5	22	72	10	103	39	11	1	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13273896--13274078	44	4.2	44	68	12	119	39	11	1	46	1.50
13274135--13274197	22	2.9	22	72	9	65	36	3	6	53	1.42
13274200--13274252	22	2.4	23	81	15	67	43	7	0	49	1.31
13276238--13276340	50	2.0	52	88	3	156	44	7	21	26	1.79
13277666--13277713	19	2.4	19	86	10	60	50	0	2	47	1.12
13278748--13279259	58	8.7	57	86	6	697	34	11	7	45	1.69
13278750--13279261	234	2.2	233	91	2	819	34	11	7	46	1.68
13279280--13279328	16	3.0	16	88	8	64	77	0	4	18	0.92
13279285--13279360	16	4.5	16	78	16	66	77	0	5	17	0.94
13279295--13279361	15	4.5	15	74	22	61	79	0	4	16	0.90
13279739--13279784	19	2.3	20	81	3	58	26	19	30	23	1.98
13280406--13280545	3	45.3	3	71	23	80	62	4	0	32	1.14
13280470--13280541	19	3.8	19	74	18	62	65	2	0	31	1.07
13280405--13280542	16	8.2	17	71	23	89	63	4	0	32	1.14
13280406--13280542	51	2.7	50	74	20	147	62	4	0	32	1.15
13280769--13281226	42	11.1	41	90	6	707	36	23	17	23	1.95
13280769--13281226	82	5.6	82	91	4	721	36	23	17	23	1.95
13280769--13281226	165	2.8	160	91	5	702	36	23	17	23	1.95
13282404--13282460	25	2.3	24	82	11	71	3	17	0	78	0.88
13282421--13282462	9	4.6	9	80	14	50	0	16	0	83	0.65
13282404--13282464	7	8.9	7	77	8	54	3	16	0	80	0.84
13282416--13282460	17	2.6	18	89	3	65	2	17	0	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13282430--13282463	10	3.3	10	87	4	50	0	14	0	85	0.60
13282456--13282490	16	2.3	15	86	13	54	8	20	0	71	1.11
13286331--13286851	58	8.9	58	87	6	714	34	12	7	45	1.69
13286329--13286848	175	2.9	175	89	4	789	35	12	7	45	1.70
13286333--13286845	236	2.2	234	91	2	848	34	12	7	45	1.69
13286869--13286941	16	4.2	16	78	16	67	78	0	5	16	0.94
13286879--13286933	10	5.7	9	81	14	65	80	0	3	16	0.86
13286879--13287001	20	6.0	20	69	16	74	73	4	3	19	1.14
13286964--13287002	4	9.8	4	88	0	60	74	5	0	20	1.01
13287894--13287937	23	1.9	23	85	0	61	72	6	4	15	1.22
13287978--13288101	3	40.3	3	69	24	57	62	4	0	33	1.17
13287978--13288088	47	2.4	47	72	15	113	61	4	0	34	1.16
13289354--13289399	23	2.0	23	84	12	60	56	15	6	21	1.61
13290457--13290497	21	2.0	21	85	9	57	56	0	0	43	0.99
13290462--13290510	22	2.2	22	78	7	55	61	0	0	38	0.96
13291320--13291346	3	9.0	3	100	0	54	66	0	0	33	0.92
13292935--13292965	15	2.0	16	93	6	55	35	0	0	64	0.94
13297622--13297672	27	1.9	27	88	4	77	41	0	1	56	1.10
13298575--13298619	21	2.2	21	80	15	58	53	0	0	46	1.00
13298578--13298619	20	2.1	20	86	8	59	54	0	0	45	0.99
13299172--13299206	12	2.8	12	95	4	61	42	2	0	54	1.15
13299759--13299803	19	2.3	20	78	14	51	13	13	6	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13300484--13300528	22	2.0	22	82	0	54	26	0	6	66	1.16
13303214--13303264	22	2.3	22	83	6	59	52	0	7	39	1.30
13306045--13306181	68	2.0	68	91	0	220	32	8	21	37	1.84
13313970--13314011	22	1.9	22	85	9	59	45	4	4	45	1.45
13314729--13314873	52	2.8	52	87	2	202	25	24	8	42	1.82
13314898--13314928	11	2.8	11	100	0	62	51	29	0	19	1.47
13315146--13315228	25	3.4	25	75	3	80	21	36	9	32	1.86
13316333--13316361	3	9.7	3	100	0	58	68	0	0	31	0.89
13318006--13318056	3	17.0	3	100	0	102	33	0	0	66	0.92
13318056--13318097	15	2.9	15	82	6	52	4	16	7	71	1.26
13318085--13318123	8	4.9	8	84	12	53	2	12	0	84	0.72
13318085--13318138	16	3.2	16	82	10	56	1	14	0	83	0.73
13323465--13323614	75	2.0	75	89	0	228	33	15	16	35	1.90
13323572--13323700	55	2.3	55	80	7	138	29	12	15	42	1.83
13323705--13323825	50	2.4	50	83	6	140	33	7	16	42	1.76
13323681--13323825	50	2.9	48	76	13	134	30	8	17	43	1.79
13323697--13323964	137	2.0	137	82	5	337	32	9	16	42	1.80
13323853--13323972	49	2.4	49	81	1	141	31	8	14	45	1.74
13324254--13324314	3	20.3	3	100	0	122	32	0	0	67	0.91
13326218--13326256	18	2.1	19	85	4	53	66	7	0	25	1.18
13329718--13329755	20	1.9	20	89	10	60	50	0	0	50	1.00
13330158--13330198	21	2.0	21	85	0	55	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13342271--13342317	22	2.2	22	88	3	69	38	4	6	51	1.47
13344287--13344343	30	1.9	30	86	10	82	33	8	7	50	1.60
13344372--13344436	30	2.2	30	83	5	87	38	1	18	41	1.60
13344414--13344474	30	2.0	30	87	6	88	45	3	11	39	1.57
13346777--13346816	19	2.1	19	85	4	53	17	5	15	62	1.49
13347463--13347487	4	6.2	4	100	0	50	24	0	0	76	0.80
13349431--13349493	28	2.2	29	85	5	92	36	11	17	34	1.85
13357475--13357623	59	2.5	58	78	4	156	51	20	5	22	1.67
13361318--13361404	41	2.1	41	81	12	99	41	2	1	55	1.20
13362520--13362665	52	2.8	52	89	5	208	39	6	23	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100