genome.fa.s113.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  39  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10230263--10230294	2	17.0	2	87	12	50	50	0	0	50	1.00
10230263--10230294	13	2.5	13	94	0	55	50	0	0	50	1.00
10230263--10230294	15	2.1	15	94	0	55	50	0	0	50	1.00
10233140--10233165	13	2.0	13	100	0	52	38	15	0	46	1.46
10233372--10233406	17	2.1	17	88	0	52	40	8	17	34	1.80
10239128--10239188	28	2.3	26	83	11	70	39	3	4	52	1.39
10241599--10241651	20	2.7	19	85	8	63	56	13	1	28	1.47
10241612--10241650	20	2.0	20	100	0	78	51	15	2	30	1.57
10242165--10242203	18	2.2	18	90	0	60	15	2	5	76	1.06
10242156--10242210	25	2.2	25	90	0	83	14	3	5	76	1.10
10242146--10242216	25	3.1	24	78	11	78	12	4	4	78	1.03
10248472--10248751	38	7.3	38	79	6	253	34	11	18	36	1.86
10248467--10248750	77	3.7	76	81	6	292	34	10	18	36	1.86
10248467--10248751	115	2.5	113	79	6	281	34	10	18	36	1.86
10248852--10248880	11	2.5	12	94	5	51	41	0	0	58	0.98
10252636--10252680	20	2.2	20	84	0	63	48	11	4	35	1.59
10254744--10254833	29	3.1	30	80	6	87	40	2	1	56	1.19
10255547--10255597	3	17.0	3	100	0	102	66	0	0	33	0.92
10257986--10258023	20	1.9	20	84	10	51	44	2	0	52	1.14
10261749--10261785	2	18.5	2	94	0	65	45	0	2	51	1.15
10263892--10263952	24	2.6	23	82	10	70	78	8	1	11	1.02
10263873--10263952	23	3.4	23	76	10	74	78	10	2	8	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10266467--10266521	27	2.0	27	100	0	110	40	10	14	34	1.81
10270297--10270357	20	3.0	20	69	13	52	22	1	11	63	1.36
10270339--10270387	14	3.4	15	76	18	50	26	0	8	65	1.20
10270436--10270517	26	3.1	26	65	16	60	54	4	1	39	1.29
10281513--10281716	69	3.0	67	67	13	166	25	6	16	51	1.68
10289720--10289757	17	2.2	18	85	4	51	44	2	7	44	1.47
10290479--10290534	16	3.6	15	76	13	60	55	10	7	26	1.60
10291014--10291593	145	4.0	145	96	0	1047	24	15	30	29	1.96
10293584--10293681	32	3.2	32	65	26	93	40	9	4	45	1.55
10293437--10293845	58	6.9	58	80	9	395	36	12	5	45	1.65
10293584--10293673	28	3.1	28	67	23	69	38	10	2	48	1.49
10294034--10294068	18	2.0	17	94	5	61	80	0	0	20	0.72
10294098--10294123	3	8.7	3	100	0	52	69	0	0	30	0.89
10295184--10295548	44	8.4	43	79	6	333	44	19	12	24	1.85
10295228--10295548	84	3.7	85	81	6	317	43	19	13	23	1.86
10295184--10295534	128	2.7	128	83	4	402	44	18	12	24	1.85
10295232--10295548	172	1.8	172	87	1	474	43	19	13	23	1.86
10295794--10295833	21	1.9	21	89	0	62	37	12	20	30	1.89
10298114--10298170	19	2.9	19	85	12	80	78	0	7	14	0.94
10298089--10298161	10	7.4	9	75	15	65	78	1	8	12	1.03
10298114--10298181	24	3.0	23	72	19	72	77	0	7	14	0.96
10299180--10299387	17	11.6	17	69	18	68	68	4	1	25	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10299260--10299326	4	17.8	4	78	6	52	67	2	1	28	1.14
10299302--10299380	8	9.9	8	76	18	67	74	3	1	20	1.04
10299317--10299380	9	7.1	9	79	11	51	76	4	1	17	1.03
10299302--10299386	29	2.9	29	75	16	86	75	3	1	20	1.02
10299539--10299584	17	2.8	17	90	3	67	2	2	10	84	0.79
10299598--10299681	41	2.0	42	90	2	116	39	22	14	23	1.91
10299652--10299709	29	2.0	29	96	0	107	39	17	18	24	1.92
10299681--10299965	42	6.8	42	94	1	502	34	24	17	23	1.96
10299681--10299965	125	2.3	125	95	1	509	34	24	17	23	1.96
10300965--10301022	8	6.8	8	85	14	80	12	12	0	75	1.04
10300963--10301055	10	10.0	10	77	15	85	9	11	2	76	1.11
10300963--10301051	18	4.9	18	82	8	108	8	11	2	77	1.07
10305911--10305947	15	2.4	16	90	4	58	5	32	5	56	1.45
10310881--10311281	59	6.7	60	86	7	516	34	11	8	46	1.70
10311297--10311382	5	16.8	5	73	21	72	77	1	6	13	1.02
10311292--10311369	34	2.3	34	84	6	95	78	1	6	14	1.01
10311319--10311366	19	2.6	18	90	6	69	83	0	4	12	0.79
10311320--10311396	24	3.3	23	72	18	79	76	1	5	16	1.03
10311389--10311438	13	3.8	13	84	7	57	68	8	0	24	1.16
10311404--10311443	12	3.2	12	86	6	53	75	5	0	20	0.99
10311830--10311854	11	2.3	11	100	0	50	32	16	28	24	1.96
10312407--10312465	3	19.7	3	96	0	109	66	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10312510--10312584	4	19.8	4	80	5	68	68	2	1	28	1.12
10312400--10312593	15	11.5	17	72	17	115	65	3	1	28	1.18
10320823--10321210	59	6.5	58	81	6	429	35	12	6	45	1.67
10320755--10321197	60	7.5	57	79	8	401	35	10	7	46	1.66
10320764--10321201	177	2.5	180	84	8	517	35	10	7	46	1.66
10320810--10321232	60	7.2	58	82	8	453	34	11	6	47	1.66
10321214--10321246	14	2.3	15	89	5	50	27	0	9	63	1.24
10321849--10321886	20	1.9	20	88	0	58	39	13	26	21	1.89
10328445--10328488	13	3.5	13	78	6	54	43	34	9	13	1.76
10329255--10329971	354	2.0	355	86	2	983	36	11	14	37	1.82
10332978--10333008	4	7.8	4	92	0	53	29	0	22	48	1.51
10334371--10334405	2	17.5	2	100	0	70	51	0	0	48	1.00
10335042--10335066	11	2.3	11	100	0	50	48	0	0	52	1.00
10338499--10338541	16	2.6	16	85	3	59	62	0	2	34	1.08
10340683--10340707	11	2.3	11	100	0	50	48	0	0	52	1.00
10347579--10347603	11	2.3	11	100	0	50	52	0	0	48	1.00
10347598--10347640	14	3.0	14	80	6	50	69	0	0	30	0.88
10349748--10349790	16	2.6	16	85	3	59	34	2	0	62	1.08
10353227--10353251	11	2.3	11	100	0	50	52	0	0	48	1.00
10353886--10353926	2	20.5	2	100	0	82	48	0	0	51	1.00
10355291--10355321	4	7.8	4	92	0	53	48	22	0	29	1.51
10355283--10355334	12	4.3	12	82	0	50	51	13	0	34	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10358325--10359048	355	2.0	354	85	2	970	37	14	11	36	1.82
10359655--10359808	84	1.8	84	80	5	186	23	7	25	42	1.81
10359812--10359855	13	3.5	13	78	6	54	13	9	34	43	1.76
10366340--10366369	15	2.0	15	93	0	51	23	0	16	60	1.36
10366878--10367439	59	9.3	59	73	14	391	47	7	10	34	1.66
10367059--10367091	15	2.3	15	89	5	50	63	9	0	27	1.24
10367007--10367148	71	2.0	72	80	4	162	50	7	10	30	1.65
10367108--10367439	60	5.5	58	81	8	346	46	7	10	35	1.67
10374979--10375015	3	12.3	3	100	0	74	32	0	0	67	0.91
10375014--10375063	3	16.7	3	100	0	100	34	32	0	34	1.58
10378565--10378721	52	3.0	53	85	3	194	41	8	22	27	1.82
10379519--10379554	11	3.5	11	78	21	51	69	0	0	30	0.89
10379548--10379608	21	3.0	21	81	11	65	54	1	4	39	1.32
10386275--10386331	24	2.3	25	79	8	64	75	1	3	19	1.04
10387104--10387266	81	2.0	81	89	2	247	53	11	12	22	1.69
10389998--10390054	25	2.3	26	76	14	66	54	0	5	40	1.23
10390130--10390172	19	2.1	21	87	8	63	34	0	2	62	1.08
10394560--10394591	2	16.0	2	93	0	55	46	0	3	50	1.17
10396145--10396191	24	2.0	24	95	0	85	36	0	40	23	1.55
10396632--10396656	9	2.8	9	100	0	50	80	0	0	20	0.72
10402635--10402678	8	5.5	8	86	0	52	0	40	9	50	1.34
10402635--10402678	6	7.3	6	92	0	52	0	40	9	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10402703--10402734	16	2.0	16	100	0	64	25	18	18	37	1.94
10405426--10405465	19	2.1	19	100	0	80	35	10	17	37	1.83
10408377--10408422	24	1.9	24	82	8	58	43	10	2	43	1.51
10415224--10415263	1	40.0	1	84	0	53	92	7	0	0	0.38
10415224--10415263	15	2.7	15	92	3	64	92	7	0	0	0.38
10416756--10416789	2	17.0	2	100	0	68	50	0	0	50	1.00
10419341--10419367	1	27.0	1	100	0	54	100	0	0	0	0.00
10427275--10427342	12	5.6	12	69	10	57	36	23	16	23	1.94
10429013--10429063	26	2.1	23	85	10	66	70	0	1	27	0.98
10429377--10429409	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100