genome.fa.s113.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  57  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13364045--13364084	19	2.0	19	90	9	62	57	0	25	17	1.40
13374840--13374876	19	1.9	19	100	0	74	43	0	2	54	1.14
13375590--13375639	20	2.5	20	80	6	57	38	0	0	62	0.96
13375830--13375869	20	2.0	21	90	5	64	45	0	0	55	0.99
13380273--13380308	17	2.1	18	89	5	56	27	2	0	69	1.02
13380392--13380455	22	3.0	20	75	16	58	51	0	0	48	1.00
13383011--13383056	20	2.2	22	84	7	60	45	0	6	47	1.28
13383373--13383413	18	2.3	18	87	4	57	48	36	0	14	1.44
13383397--13383477	15	5.3	15	76	5	81	45	29	2	22	1.65
13383378--13383455	15	5.0	15	75	12	59	46	33	1	19	1.58
13391426--13391875	33	13.7	33	87	1	582	28	21	16	33	1.95
13392554--13392632	22	3.5	22	76	8	88	26	22	21	29	1.99
13392548--13392633	45	1.9	45	88	4	129	25	22	22	30	1.99
13392548--13392606	22	2.6	23	86	5	93	25	25	20	28	1.99
13392957--13393018	15	3.9	15	75	12	52	54	0	1	43	1.09
13392968--13393024	31	1.9	29	82	10	71	61	0	0	38	0.96
13393019--13393060	7	5.7	7	83	10	57	85	9	4	0	0.72
13393584--13393608	11	2.3	11	100	0	50	92	0	8	0	0.40
13394270--13394348	15	5.1	15	80	6	86	46	30	1	21	1.59
13394246--13394355	15	6.8	17	73	17	74	46	32	0	20	1.57
13405051--13405084	13	2.6	13	90	0	50	52	0	11	35	1.38
13406110--13406419	62	5.0	63	70	12	219	42	10	8	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13406110--13406419	63	5.0	65	72	12	256	42	10	8	37	1.71
13406109--13406418	126	2.5	125	82	5	376	42	10	8	37	1.71
13408754--13408809	21	2.7	21	80	0	58	17	5	16	60	1.53
13408831--13408900	26	2.9	25	72	12	74	32	11	10	45	1.73
13414009--13414048	3	13.3	3	89	0	62	62	0	2	35	1.09
13415571--13415624	7	7.7	7	75	8	56	35	0	0	64	0.94
13417772--13417844	30	2.5	30	81	2	85	38	6	2	52	1.43
13417738--13417978	119	2.0	120	94	0	421	37	9	4	48	1.56
13417995--13418106	30	3.8	30	77	10	90	49	4	8	38	1.53
13421061--13421098	2	19.5	2	94	5	69	50	0	0	50	1.00
13425034--13425084	4	12.5	4	76	12	50	25	5	0	68	1.12
13430634--13430680	24	2.0	24	87	8	69	44	2	12	40	1.54
13430812--13430989	44	4.1	44	68	15	145	38	8	15	37	1.77
13430875--13430924	20	2.5	20	96	0	91	44	6	16	34	1.72
13430708--13430904	109	1.8	109	87	2	297	38	9	15	37	1.80
13430783--13431085	129	2.4	129	84	1	394	37	9	16	36	1.82
13430992--13431050	20	3.0	20	89	0	82	35	11	18	33	1.88
13431351--13431384	16	2.1	16	88	5	50	41	11	2	44	1.56
13432406--13432455	23	2.1	24	92	3	84	28	4	2	66	1.21
13434648--13434700	6	8.3	6	79	8	52	77	0	7	15	0.98
13434662--13434709	16	2.9	16	84	6	51	75	2	4	18	1.07
13434677--13434752	3	26.0	3	74	10	50	61	2	2	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13435264--13435813	121	4.5	120	76	5	446	47	13	19	19	1.82
13439886--13439928	21	2.0	21	81	0	50	53	9	11	25	1.67
13439904--13439970	26	2.6	26	90	2	109	55	7	11	25	1.62
13440683--13440721	17	2.2	16	86	13	51	33	0	12	53	1.39
13440940--13440983	19	2.3	19	84	0	61	79	2	4	13	0.98
13443232--13443287	26	2.2	26	80	6	60	21	1	3	73	1.08
13443198--13443287	45	2.0	44	80	6	101	21	2	4	72	1.13
13443882--13443942	31	2.0	30	83	3	77	47	13	11	27	1.77
13444442--13444568	55	2.4	54	89	2	184	40	6	4	48	1.49
13444574--13444617	18	2.5	17	85	3	61	45	0	0	54	0.99
13444865--13444907	21	2.1	20	83	12	52	41	0	6	51	1.29
13444942--13444989	19	2.5	19	73	6	53	68	4	0	27	1.07
13445338--13445370	10	3.7	9	88	12	50	27	0	0	72	0.85
13447988--13448012	12	2.1	12	100	0	50	8	8	8	76	1.18
13450702--13450726	6	4.2	6	100	0	50	20	0	0	80	0.72
13451289--13451316	2	14.0	2	100	0	56	50	0	0	50	1.00
13453031--13453066	2	18.0	2	100	0	72	50	0	0	50	1.00
13456862--13456908	23	2.0	23	100	0	94	38	17	8	36	1.80
13459505--13459551	19	2.5	20	76	13	55	53	4	0	42	1.20
13463741--13463786	19	2.3	20	88	3	67	36	0	0	63	0.95
13463756--13463840	19	4.5	18	68	20	66	48	2	0	49	1.14
13471913--13471945	12	2.8	12	90	4	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13472095--13472127	15	2.1	16	88	5	50	48	0	3	48	1.17
13472633--13472662	15	1.9	16	93	6	53	43	0	0	56	0.99
13473120--13473165	17	2.7	18	86	6	60	36	0	0	63	0.95
13473126--13473165	19	2.1	19	95	0	71	35	0	0	65	0.93
13473658--13473688	16	1.9	16	93	0	53	58	0	0	41	0.98
13473767--13473806	21	1.9	21	85	10	55	45	0	2	52	1.14
13473921--13473965	21	2.2	21	92	4	74	55	0	0	44	0.99
13474051--13474128	34	2.3	35	76	10	81	44	0	5	50	1.24
13474138--13474179	19	2.1	21	86	8	61	54	0	0	45	0.99
13474318--13474351	18	1.9	18	88	5	52	41	2	5	50	1.42
13474395--13474464	28	2.4	29	80	7	79	55	1	1	41	1.17
13474603--13474627	12	2.1	12	100	0	50	44	0	0	56	0.99
13474565--13474718	57	2.8	55	85	5	220	37	9	3	49	1.52
13481852--13481890	13	2.8	13	85	11	51	69	2	20	7	1.26
13482372--13482733	46	7.8	46	78	3	305	30	9	15	43	1.79
13482418--13482672	138	1.8	140	85	1	361	30	9	14	45	1.77
13482568--13482891	48	6.9	48	76	9	186	30	7	16	45	1.76
13482429--13482891	46	9.9	47	75	10	188	29	8	16	45	1.78
13482716--13482944	97	2.4	96	82	8	254	31	6	16	45	1.74
13482778--13483034	49	5.4	48	72	13	158	33	6	14	45	1.71
13482779--13483034	97	2.7	92	78	11	216	33	6	14	45	1.70
13482922--13483034	46	2.4	45	80	11	120	34	5	14	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13482957--13483050	45	2.1	45	80	11	104	38	6	15	39	1.74
13483074--13483128	5	10.8	5	82	2	56	74	18	1	5	1.10
13483074--13483128	15	3.6	15	85	2	65	74	18	1	5	1.10
13484069--13484153	39	2.2	39	83	10	104	65	9	15	9	1.45
13486123--13486156	17	2.0	17	88	0	50	55	5	0	38	1.24
13487757--13487784	3	9.3	3	100	0	56	67	0	0	32	0.91
13494767--13494830	17	3.5	18	78	8	58	60	1	1	35	1.15
13497780--13497823	20	2.2	20	84	8	54	18	18	27	36	1.94
13501182--13501226	17	2.6	17	82	0	54	44	22	6	26	1.77
13503768--13503806	13	3.0	13	82	14	53	61	0	5	33	1.18
13504347--13504571	118	1.9	118	92	0	378	45	8	8	37	1.66
13504756--13504780	1	25.0	1	100	0	50	100	0	0	0	0.00
13505106--13505130	7	3.6	7	100	0	50	16	0	0	84	0.63
13506288--13506348	13	4.2	15	76	17	58	34	0	1	63	1.04
13506810--13506869	30	2.0	30	83	3	75	63	5	5	26	1.36
13514081--13514114	15	2.3	15	89	0	50	23	0	17	58	1.38
13514149--13514180	17	1.9	17	93	6	57	0	18	0	81	0.70
13514695--13514739	20	2.2	20	88	0	63	62	20	2	15	1.43
13515270--13515334	26	2.5	26	80	5	60	27	27	23	21	1.99
13515296--13515366	26	2.7	26	88	0	97	23	23	25	26	2.00
13515513--13516450	119	7.9	119	76	4	701	45	13	20	19	1.84
13515551--13516455	477	1.9	475	80	3	1075	45	13	20	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13516520--13516548	14	2.0	15	93	6	51	10	34	13	41	1.79
13527747--13527797	5	10.4	5	79	12	61	78	3	0	17	0.90
13527750--13527800	24	2.2	23	89	3	75	80	3	0	15	0.86
13528612--13528755	3	49.7	3	76	16	92	70	2	2	24	1.14
13528787--13528851	26	2.5	26	78	14	71	33	24	23	18	1.96
13530353--13530399	18	2.7	18	81	12	53	80	2	17	0	0.80
13531572--13531619	24	2.0	24	84	8	62	54	2	10	33	1.46
13532787--13532814	10	2.8	10	100	0	56	25	0	0	75	0.81
13534817--13534850	11	3.0	11	86	4	50	58	0	0	41	0.98
13537232--13537258	5	5.4	5	100	0	54	40	0	40	18	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100