genome.fa.s113.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  51  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12330073--12330152	25	3.2	25	75	7	90	41	8	31	18	1.81
12330457--12330613	52	3.0	52	86	1	217	38	8	25	27	1.86
12330893--12330978	44	2.0	43	95	2	154	23	2	34	39	1.67
12337145--12337187	20	2.2	20	100	0	86	46	11	9	32	1.72
12346398--12346459	16	3.7	17	74	18	67	64	1	12	20	1.36
12349297--12349353	26	2.2	25	79	14	62	66	0	10	22	1.22
12349320--12349352	16	2.0	17	94	5	59	66	0	9	24	1.20
12349299--12349385	12	8.5	10	70	22	56	62	0	14	22	1.32
12351413--12351466	16	3.4	16	76	19	58	9	25	0	64	1.23
12351586--12351637	12	4.3	12	77	0	50	9	19	5	65	1.42
12351586--12351643	18	3.2	18	80	0	71	10	20	5	63	1.44
12351583--12351663	36	2.3	34	79	12	90	7	20	3	67	1.31
12354928--12354975	3	16.0	3	100	0	96	66	0	0	33	0.92
12355739--12355836	49	2.0	49	91	0	160	37	21	9	31	1.85
12359874--12360020	52	2.8	52	91	0	231	40	8	25	25	1.83
12360552--12360599	25	1.9	25	83	8	62	39	4	31	25	1.74
12360557--12360618	25	2.5	24	74	7	61	43	6	27	22	1.77
12360947--12361103	52	3.0	52	84	0	206	39	8	24	26	1.85
12361635--12361702	25	2.7	25	76	0	82	47	7	25	20	1.76
12362019--12362175	52	3.0	52	85	1	199	39	8	24	27	1.84
12363087--12363243	52	3.0	52	82	1	190	40	7	24	27	1.82
12363523--12363608	44	2.0	43	95	2	154	23	2	34	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12370360--12370770	221	1.9	221	84	1	554	35	11	16	36	1.86
12384970--12385031	16	3.7	17	74	18	67	64	1	12	20	1.36
12385957--12385982	6	4.3	6	100	0	52	65	15	0	19	1.27
12387031--12387071	16	2.6	16	100	0	82	48	0	0	51	1.00
12387540--12387601	31	2.0	30	84	3	79	41	17	8	32	1.79
12391040--12391098	29	2.0	29	93	6	102	38	16	13	30	1.88
12397310--12397363	11	4.9	11	93	0	90	18	0	29	51	1.46
12397395--12397532	52	2.7	51	87	3	195	42	7	23	26	1.80
12398471--12398608	55	2.6	53	82	5	152	44	7	21	26	1.78
12399963--12400286	120	2.7	119	81	8	347	45	7	11	35	1.68
12399962--12400281	59	5.4	60	82	7	375	46	6	11	35	1.66
12403375--12403428	11	4.9	11	93	0	90	18	0	29	51	1.46
12403462--12403596	52	2.6	52	90	1	207	42	7	23	26	1.80
12404549--12404693	52	2.8	52	86	2	184	42	6	24	27	1.78
12406040--12406320	117	2.4	117	86	2	368	48	7	9	34	1.64
12406040--12406356	60	5.4	59	85	4	401	47	6	11	35	1.66
12418689--12419091	221	1.8	221	84	4	553	37	10	15	36	1.82
12420722--12420788	33	2.0	33	100	0	134	40	2	23	32	1.70
12434451--12434495	16	2.8	17	83	10	58	71	0	11	17	1.14
12434441--12434497	26	2.2	25	79	14	62	70	0	8	21	1.14
12437611--12437667	26	2.2	25	79	14	62	66	0	10	22	1.22
12437634--12437666	16	2.0	17	94	5	59	66	0	9	24	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12437613--12437699	12	8.5	10	70	22	56	62	1	13	22	1.38
12439879--12439930	12	4.3	12	82	0	59	7	21	5	65	1.40
12439887--12439936	6	8.3	6	84	8	57	10	22	4	64	1.41
12439879--12439936	18	3.2	18	85	0	80	8	22	5	63	1.42
12444047--12444458	221	1.9	221	86	2	585	36	12	15	35	1.86
12451414--12451482	21	3.2	21	74	12	68	50	4	1	43	1.30
12455583--12455761	94	1.9	91	85	3	241	44	14	12	28	1.82
12468847--12468940	47	2.0	46	83	2	116	43	10	15	29	1.81
12479534--12479589	3	18.7	3	100	0	112	32	0	0	67	0.91
12482116--12482210	49	1.9	49	95	0	172	48	17	16	16	1.82
12483806--12483939	71	1.9	71	87	3	198	42	18	14	23	1.88
12492993--12493017	13	1.9	13	100	0	50	32	0	12	56	1.36
12496552--12496577	2	13.0	2	100	0	52	50	0	0	50	1.00
12496617--12496646	2	15.0	2	100	0	60	50	0	0	50	1.00
12500794--12500905	30	3.8	29	85	7	118	43	13	0	41	1.50
12500794--12500907	60	1.9	60	81	3	140	43	14	0	41	1.51
12501551--12501607	19	2.8	19	80	17	62	50	0	1	47	1.11
12501539--12501602	25	2.7	26	75	22	77	50	0	1	48	1.10
12504074--12504117	21	2.0	22	83	12	56	59	2	2	36	1.23
12505145--12505170	2	13.0	2	100	0	52	50	0	0	50	1.00
12505170--12505200	2	15.5	2	93	0	53	54	0	45	0	0.99
12505226--12505447	105	2.1	105	88	2	338	42	17	8	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12506316--12506355	20	2.0	20	85	0	53	40	22	10	27	1.86
12507279--12507310	14	2.1	16	88	11	50	50	15	15	18	1.79
12507489--12507532	17	2.6	17	81	0	61	52	11	22	13	1.72
12511638--12511723	28	3.1	28	89	0	136	39	15	18	26	1.90
12513538--12513575	20	1.9	20	88	0	58	57	2	5	34	1.35
12519920--12519970	20	2.4	21	87	12	70	31	0	0	68	0.90
12519939--12519977	12	3.4	12	82	10	55	33	0	0	66	0.92
12519939--12519987	22	2.2	22	85	7	64	38	0	0	61	0.96
12519932--12519993	31	2.1	29	84	6	79	38	0	0	61	0.96
12521546--12521577	11	2.9	11	90	0	55	68	0	0	31	0.90
12525856--12525932	9	8.6	9	75	7	59	79	0	10	10	0.95
12525865--12525941	16	4.4	18	75	12	81	77	0	10	11	0.98
12525846--12525941	35	2.8	34	78	7	106	77	0	11	11	1.01
12525867--12525941	9	8.8	9	75	10	77	78	0	9	12	0.96
12525892--12525932	10	4.3	10	87	9	59	82	0	4	12	0.81
12528302--12528832	57	8.9	59	83	11	610	33	12	8	45	1.74
12528480--12528570	28	3.2	27	62	17	67	35	15	5	43	1.70
12528299--12528814	175	2.9	177	86	8	714	33	13	8	44	1.75
12528850--12528884	10	3.5	10	85	14	54	77	0	0	22	0.78
12528844--12528883	20	2.0	21	95	5	73	75	0	2	22	0.93
12528873--12528923	16	3.1	16	81	10	50	76	3	5	13	1.11
12528843--12528912	20	3.5	20	75	16	63	77	1	4	17	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12529068--12529093	8	3.2	8	100	0	52	11	26	38	23	1.89
12529425--12529491	31	2.2	31	84	10	84	26	20	23	28	1.99
12529956--12530004	3	15.7	3	84	16	64	67	0	0	32	0.91
12530059--12530091	9	3.7	9	95	0	57	87	0	12	0	0.53
12530059--12530092	17	2.0	17	94	0	59	85	0	14	0	0.60
12531765--12531816	18	2.8	19	74	11	63	25	9	13	51	1.71
12532969--12533039	17	4.4	17	76	18	71	59	0	2	38	1.12
12536310--12536346	18	2.1	18	94	0	65	35	24	10	29	1.89
12545032--12545071	22	1.9	20	85	10	53	32	0	2	65	1.06
12546527--12546566	2	20.0	2	94	0	71	47	0	2	50	1.14
12553104--12553624	156	3.3	157	79	6	556	32	5	21	40	1.76
12570504--12570579	35	2.1	37	85	9	102	47	6	3	42	1.48
12573378--12573411	18	1.9	17	94	5	59	0	14	0	85	0.60
12573463--12573509	3	15.7	3	91	8	78	34	0	0	65	0.93
12573902--12573955	25	2.2	25	86	6	74	37	5	18	38	1.74
12574369--12574394	8	3.2	8	100	0	52	23	38	26	11	1.89
12574536--12574575	17	2.3	18	82	8	55	12	7	5	75	1.18
12574578--12574612	10	3.5	10	85	14	54	22	0	0	77	0.78
12574579--12574618	20	2.0	21	95	5	73	22	2	0	75	0.93
12574646--12575158	60	8.7	59	87	5	718	44	7	13	33	1.73
12574646--12575158	176	2.9	177	89	3	750	44	7	13	33	1.73
12574627--12575158	236	2.2	235	90	4	811	45	8	13	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12580282--12580371	41	2.2	42	86	7	132	23	17	17	41	1.90
12580345--12580398	27	2.0	27	100	0	108	22	18	18	40	1.91
12580304--12580441	68	2.0	68	92	0	231	23	19	18	38	1.93
12580282--12580482	109	1.9	108	92	1	339	22	18	18	39	1.93
12580372--12580896	41	12.4	41	83	11	627	23	18	22	35	1.95
12580372--12580896	84	6.2	83	85	10	665	23	18	22	35	1.95
12580619--12580896	81	3.4	81	86	9	393	23	17	22	36	1.95
12580372--12580873	260	1.9	259	89	7	786	23	18	21	36	1.95
12581125--12581163	16	2.4	16	87	8	53	30	0	2	66	1.05
12581125--12581259	55	2.4	56	79	12	132	30	1	3	64	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100