genome.fa.s113.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  35  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9438351--9438434	37	2.3	36	83	8	107	46	0	0	53	1.00
9438353--9438435	41	2.0	41	86	9	116	44	0	0	55	0.99
9438425--9438464	20	2.0	20	85	9	55	57	0	0	42	0.98
9438675--9438718	21	2.1	21	86	0	61	77	11	4	6	1.11
9442610--9442638	13	2.3	13	94	5	51	20	0	6	72	1.07
9442665--9442706	19	2.3	19	91	4	68	50	2	0	47	1.14
9442695--9442767	8	9.1	8	71	11	60	60	2	1	35	1.20
9442670--9442767	48	2.0	47	84	7	126	57	3	1	38	1.21
9442696--9442767	16	4.5	16	71	13	67	61	2	1	34	1.19
9442719--9442782	33	2.0	32	87	9	94	56	1	1	40	1.18
9442938--9442981	18	2.3	19	80	11	54	47	2	0	50	1.13
9445749--9445830	34	2.4	35	84	10	114	43	3	3	48	1.38
9448404--9448478	15	5.3	15	76	20	72	14	0	8	77	0.98
9448417--9448470	25	2.2	25	96	0	99	16	0	7	75	1.01
9448466--9448504	19	2.1	18	86	13	53	25	0	5	69	1.09
9448487--9448533	12	3.9	12	75	10	51	29	0	2	68	1.02
9450967--9451014	24	2.0	24	91	0	78	52	12	8	27	1.67
9452607--9452631	2	12.5	2	100	0	50	52	0	0	48	1.00
9459929--9459964	12	3.0	12	92	8	56	0	5	2	91	0.49
9459932--9459964	16	2.1	16	94	0	57	0	3	3	93	0.39
9463988--9464031	20	2.2	20	88	8	63	29	2	2	65	1.16
9473245--9473318	37	2.0	37	94	0	130	24	10	22	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9474333--9474382	10	4.9	10	90	4	82	32	0	2	66	1.03
9474333--9474399	14	4.5	14	75	18	64	31	0	2	65	1.07
9474333--9474394	21	3.0	21	84	15	85	32	0	3	64	1.09
9474337--9474416	36	2.2	36	82	6	90	33	2	2	61	1.23
9476742--9476770	2	14.5	2	100	0	58	48	0	0	51	1.00
9478145--9478178	16	2.3	14	90	10	50	26	0	5	67	1.13
9478234--9478331	43	2.2	43	81	18	105	50	1	0	48	1.07
9483915--9483948	2	17.0	2	100	0	68	50	0	0	50	1.00
9488136--9488176	17	2.3	18	91	4	66	29	0	0	70	0.87
9488226--9488256	16	1.9	16	100	0	62	61	0	0	38	0.96
9490770--9490808	12	3.0	13	78	14	53	71	0	7	20	1.10
9495592--9495629	16	2.3	17	90	9	69	84	5	5	5	0.88
9497401--9497569	75	2.3	74	88	1	239	34	12	13	39	1.82
9497549--9497589	20	2.0	20	100	0	82	19	14	9	56	1.66
9497549--9497598	20	2.5	20	90	6	66	22	14	12	52	1.74
9497449--9497720	95	2.8	98	72	14	265	33	15	14	37	1.87
9497660--9497813	76	2.0	75	86	3	211	33	17	16	32	1.93
9497723--9498157	116	3.7	117	79	4	428	34	16	14	35	1.89
9498188--9498231	23	2.0	23	86	4	63	31	22	9	36	1.86
9498195--9498250	23	2.5	23	82	2	69	30	17	10	41	1.84
9498695--9498733	3	12.7	3	83	5	51	61	0	2	35	1.10
9498745--9498789	13	3.4	13	84	6	63	73	0	11	15	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9498750--9498792	14	3.1	14	90	3	70	67	0	13	18	1.23
9499066--9499115	24	2.1	24	88	0	73	30	34	10	26	1.89
9499867--9499909	12	3.8	12	79	20	56	69	0	2	27	1.00
9499951--9500021	3	23.7	3	90	5	108	69	1	0	29	0.98
9500288--9500559	14	18.9	14	63	17	58	48	29	0	21	1.53
9500287--9500524	59	4.1	58	78	8	209	47	28	0	23	1.55
9500284--9500459	30	6.0	30	74	15	145	46	27	0	26	1.53
9500493--9500566	21	3.5	21	80	12	80	52	33	0	13	1.41
9500287--9500541	30	8.8	29	70	14	138	47	29	0	22	1.55
9500493--9500566	22	3.5	21	80	9	87	52	33	0	13	1.41
9500493--9500566	8	9.2	8	72	24	50	52	33	0	13	1.41
9500542--9500598	29	2.0	29	89	0	87	52	24	0	22	1.47
9506638--9506676	19	2.1	19	95	0	69	53	0	17	28	1.44
9511630--9511683	26	2.2	25	78	15	60	62	1	5	29	1.28
9512273--9512314	16	2.6	16	85	7	50	19	4	4	71	1.22
9513277--9513334	22	2.7	22	75	21	68	55	0	0	44	0.99
9513303--9513337	17	2.0	18	88	5	54	51	0	0	48	1.00
9513277--9513337	19	2.9	21	76	23	65	52	0	0	47	1.00
9515310--9515351	18	2.4	18	88	11	61	33	0	0	66	0.92
9515359--9515438	15	5.1	16	68	20	53	47	1	0	51	1.08
9515369--9515409	20	2.0	20	90	4	64	46	0	0	53	1.00
9515395--9515452	29	2.0	28	93	3	98	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9515700--9515740	22	1.9	21	85	5	55	75	0	2	21	0.92
9515790--9515822	9	3.8	9	88	4	50	75	0	0	24	0.80
9516086--9516124	14	2.8	14	84	0	60	51	23	0	25	1.49
9516143--9516266	30	4.2	30	77	10	146	45	31	0	22	1.53
9516113--9516293	59	3.1	59	80	8	178	45	29	1	23	1.62
9516300--9516380	8	10.0	8	76	19	71	53	33	0	13	1.40
9516302--9516380	22	3.6	22	88	6	117	53	32	0	13	1.41
9516356--9516412	29	2.0	29	89	0	87	52	24	0	22	1.47
9522438--9522476	19	2.1	19	95	0	69	53	0	17	28	1.44
9527433--9527486	26	2.2	25	78	15	60	62	1	5	29	1.28
9528811--9528845	17	2.0	18	88	5	54	51	0	0	48	1.00
9528784--9528842	22	2.6	22	71	12	57	54	0	0	45	0.99
9530389--9530435	23	2.0	23	100	0	94	21	0	36	42	1.53
9530836--9530877	18	2.4	18	88	11	61	33	0	0	66	0.92
9530896--9530936	20	2.0	20	90	4	64	46	0	0	53	1.00
9530912--9530978	28	2.5	25	80	15	89	50	2	0	46	1.16
9530922--9530978	28	2.0	28	96	0	105	52	3	0	43	1.18
9531227--9531267	22	1.9	21	85	5	55	75	0	2	21	0.92
9531317--9531346	9	3.2	9	95	4	51	76	0	0	23	0.78
9531612--9531650	14	2.8	14	84	0	60	51	23	0	25	1.49
9531669--9531847	74	2.4	74	80	8	179	48	29	0	21	1.54
9531811--9531891	8	10.0	8	76	19	71	53	33	0	13	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9531813--9531891	22	3.6	22	88	6	117	53	32	0	13	1.41
9531867--9531923	29	2.0	29	89	0	87	52	24	0	22	1.47
9537947--9537984	18	2.1	19	90	5	60	52	0	18	28	1.45
9546967--9546995	15	1.9	15	100	0	58	24	0	0	75	0.80
9557647--9557705	20	3.0	20	94	0	100	18	30	28	22	1.97
9557753--9557782	16	1.9	15	93	6	51	13	0	0	86	0.57
9558011--9558043	11	2.8	12	86	9	50	18	0	0	81	0.68
9558458--9558501	20	2.2	20	95	0	79	38	31	25	4	1.76
9558456--9558573	62	1.9	63	82	5	150	32	29	21	16	1.95
9558519--9558563	20	2.2	20	84	0	54	33	28	22	15	1.95
9558810--9558851	14	3.1	15	80	19	56	7	42	21	28	1.79
9558810--9558846	13	2.7	14	80	20	51	8	43	24	24	1.81
9558898--9558946	14	3.6	14	91	5	75	8	0	4	87	0.65
9558908--9558952	14	2.9	16	83	12	67	13	0	6	80	0.91
9558981--9559262	154	1.8	157	94	2	507	30	13	17	37	1.89
9562172--9562251	35	2.3	35	93	2	133	60	2	0	37	1.11
9564418--9564469	21	2.6	19	77	14	50	55	0	0	44	0.99
9564522--9564558	19	2.0	18	89	5	56	70	0	2	27	1.01
9564600--9564654	20	2.8	21	76	20	64	47	3	5	43	1.44
9567244--9567288	24	1.9	23	82	13	56	62	4	2	31	1.27
9570327--9570359	2	16.5	2	93	0	57	45	0	3	51	1.16
9571423--9571465	19	2.2	20	84	12	63	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9573442--9573475	17	2.0	17	88	11	52	50	0	0	50	1.00
9576925--9576963	19	2.1	19	95	0	69	28	17	0	53	1.44
9580905--9580949	23	2.0	23	86	0	63	31	0	2	66	1.04
9581039--9581107	19	3.6	18	70	21	50	59	1	2	36	1.21
9581601--9581640	21	2.0	20	90	5	62	72	0	2	25	0.97
9583010--9583066	29	2.0	29	89	0	87	22	0	24	52	1.47
9583042--9583096	23	2.5	21	85	8	74	14	0	34	50	1.43
9583042--9583250	30	7.1	30	70	13	139	20	0	30	48	1.54
9583151--9583299	59	2.6	59	82	8	164	28	1	25	44	1.62
9583259--9583317	21	2.8	21	79	7	57	33	0	22	44	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100