genome.fa.s113.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  26  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7481756--7481808	21	2.3	23	87	9	74	20	0	3	75	0.96
7483170--7483211	17	2.5	17	77	14	50	40	0	0	59	0.97
7488529--7488553	13	1.9	13	100	0	50	64	16	12	8	1.49
7494399--7494441	16	2.5	17	88	11	70	34	0	0	65	0.93
7494475--7494514	13	3.1	13	81	0	53	57	0	0	42	0.98
7494546--7494582	18	2.1	18	89	0	56	54	0	0	45	1.00
7494765--7494810	19	2.4	19	85	0	65	36	0	2	60	1.09
7495732--7495805	30	2.4	30	88	2	112	44	1	1	52	1.17
7500275--7500337	18	3.4	18	76	10	65	42	0	1	55	1.09
7500283--7500430	37	3.8	37	71	16	104	44	0	2	52	1.20
7500386--7500458	16	4.8	16	71	17	66	45	0	2	52	1.15
7500434--7500477	19	2.3	19	84	11	54	47	2	2	47	1.27
7501553--7501606	22	2.3	23	78	9	65	62	1	5	29	1.28
7501548--7501617	22	3.3	21	75	9	54	64	1	4	30	1.21
7501559--7501613	21	2.5	22	82	2	67	67	1	1	29	1.11
7512041--7512081	21	2.0	20	90	4	64	58	0	0	41	0.98
7512087--7512120	8	4.2	8	84	0	50	61	0	2	35	1.11
7512113--7512175	29	2.1	29	82	2	72	57	9	0	33	1.31
7518179--7518204	13	2.0	13	100	0	52	61	7	15	15	1.55
7519738--7519795	26	2.2	27	78	6	66	36	1	3	58	1.25
7519778--7519810	14	2.4	14	90	5	50	42	6	0	51	1.26
7519982--7520022	2	20.5	2	94	0	73	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7520700--7520728	2	14.5	2	100	0	58	48	0	0	51	1.00
7531553--7531585	12	2.8	12	95	0	57	0	3	21	75	0.93
7531958--7532006	14	3.1	16	80	14	57	34	0	0	65	0.93
7541969--7542025	22	2.5	23	81	13	66	42	1	1	54	1.21
7542154--7542205	19	2.7	19	78	3	59	30	5	9	53	1.57
7542377--7542419	19	2.2	20	87	8	61	34	2	0	62	1.08
7542415--7542481	29	2.3	29	75	14	75	41	1	0	56	1.08
7545856--7545915	18	3.3	18	68	25	54	76	0	8	15	1.00
7546190--7546285	30	3.2	29	80	4	104	38	5	2	54	1.35
7550144--7550197	24	2.2	25	83	3	65	50	0	3	46	1.19
7550413--7550468	27	2.2	25	87	9	78	30	17	32	19	1.95
7550570--7550641	33	2.1	35	82	10	87	55	0	1	43	1.08
7550970--7551043	38	1.9	39	94	2	132	40	17	8	33	1.79
7555575--7555609	18	1.9	18	94	0	61	42	11	8	37	1.72
7559928--7559957	2	15.0	2	100	0	60	50	0	0	50	1.00
7565542--7565571	1	30.0	1	100	0	60	100	0	0	0	0.00
7565970--7566012	2	21.5	2	80	0	50	48	4	2	44	1.36
7571362--7571401	20	2.0	21	90	5	64	57	0	0	42	0.98
7571368--7571414	10	4.0	11	75	24	51	61	0	0	38	0.96
7572297--7572326	2	15.0	2	92	0	51	46	0	3	50	1.18
7572441--7572472	11	2.9	11	100	0	64	15	37	0	46	1.46
7588440--7588587	75	2.0	75	93	2	253	48	17	3	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7588880--7588908	12	2.5	12	94	5	51	31	0	0	68	0.89
7592203--7592231	14	2.0	15	93	6	51	27	3	0	68	1.05
7594449--7594544	48	2.0	48	97	0	183	27	11	4	57	1.52
7607844--7607876	14	2.4	14	95	5	59	60	6	0	33	1.21
7607847--7607887	14	3.4	12	87	12	50	58	2	0	39	1.11
7610034--7610097	29	2.2	29	81	10	69	20	3	6	70	1.23
7610835--7610866	17	1.9	16	93	6	55	50	18	9	21	1.75
7611645--7611692	21	2.2	21	85	10	62	18	0	6	75	1.01
7615808--7615890	21	4.0	21	74	0	58	61	0	3	34	1.13
7615801--7615885	42	2.0	42	84	4	109	58	0	5	35	1.22
7616563--7616595	2	17.5	2	87	12	52	48	0	0	51	1.00
7616798--7616838	11	3.8	11	87	6	57	26	2	0	70	0.99
7619899--7619937	3	13.0	3	100	0	78	33	0	0	66	0.92
7624976--7625021	12	3.8	12	83	11	58	60	8	0	30	1.26
7624985--7625020	11	3.1	11	85	14	54	61	11	0	27	1.30
7638993--7639036	2	22.0	2	92	0	70	45	0	2	52	1.13
7639318--7639367	23	2.3	23	89	6	77	48	0	0	52	1.00
7639914--7639951	18	2.2	18	85	4	51	55	2	2	39	1.28
7641134--7641205	33	2.2	32	79	11	85	43	1	25	30	1.63
7647441--7647584	64	2.2	65	80	8	152	36	7	14	40	1.75
7651807--7651862	22	2.5	22	72	16	53	46	0	0	53	1.00
7651827--7651861	18	1.9	18	88	0	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7665991--7666226	119	2.0	119	97	0	445	35	18	20	25	1.95
7668748--7668809	29	2.1	29	100	0	124	46	12	12	27	1.79
7668866--7668914	24	2.0	24	100	0	98	8	8	42	40	1.64
7674196--7674222	8	3.4	8	100	0	54	51	22	0	25	1.48
7674196--7674222	12	2.2	12	100	0	54	51	22	0	25	1.48
7677200--7677234	3	11.7	3	100	0	70	31	0	0	68	0.90
7679868--7679899	3	10.7	3	100	0	64	68	0	31	0	0.90
7682347--7682382	14	2.6	14	90	0	54	33	0	5	61	1.19
7682889--7682953	32	2.0	32	88	5	96	49	0	1	49	1.10
7687222--7687254	17	1.9	17	93	0	57	54	3	30	12	1.52
7689262--7689298	2	18.5	2	88	0	56	45	0	5	48	1.25
7689262--7689298	16	2.3	16	100	0	74	45	0	5	48	1.25
7690126--7690168	20	2.3	19	84	11	61	46	2	0	51	1.13
7690217--7690252	6	5.7	6	90	9	54	80	2	0	16	0.83
7691063--7691143	38	2.1	38	95	0	144	39	12	20	27	1.89
7705772--7705825	28	1.9	28	96	0	99	29	16	12	40	1.86
7707070--7707127	28	2.1	28	100	0	116	39	13	10	36	1.79
7707663--7707694	3	10.7	3	93	0	55	65	0	34	0	0.93
7714262--7714397	67	2.0	67	94	0	236	30	12	16	40	1.86
7716448--7716650	103	2.0	104	96	1	372	46	10	19	23	1.80
7720141--7720196	21	2.6	23	78	21	75	50	0	0	50	1.00
7720148--7720212	20	3.1	21	80	14	71	50	1	0	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7720780--7720815	17	2.1	17	89	0	54	16	22	8	52	1.70
7731393--7731444	26	2.0	26	100	0	104	46	11	11	30	1.76
7743044--7743088	16	2.9	16	76	23	51	55	0	0	44	0.99
7743718--7743776	29	2.0	29	90	0	91	50	1	5	42	1.34
7744062--7744088	4	6.8	4	100	0	54	77	0	0	22	0.76
7748774--7748847	36	2.1	36	97	0	139	35	24	10	29	1.89
7759476--7759520	20	2.3	19	84	7	54	46	0	2	51	1.13
7759483--7759520	20	2.0	20	89	5	60	47	0	2	50	1.15
7783146--7783192	24	1.9	24	86	4	67	29	2	8	59	1.39
7783210--7783276	24	2.8	24	84	6	82	50	5	1	41	1.36
7784118--7784165	19	2.5	19	86	0	69	62	8	8	20	1.49
7786863--7786913	24	2.1	24	85	7	68	45	7	13	33	1.73
7798775--7798817	22	2.0	22	95	0	77	48	20	4	25	1.69
7804069--7804103	17	2.1	17	88	0	52	11	0	17	71	1.14
7804589--7804628	3	13.3	3	100	0	80	32	0	0	67	0.91
7807890--7808127	125	1.9	125	81	5	284	34	16	18	31	1.93
7816084--7816257	65	2.6	65	76	7	172	20	19	12	47	1.82
7816286--7816425	65	2.2	65	78	2	156	26	18	9	45	1.79
7818976--7819016	2	21.5	2	80	9	50	46	2	0	51	1.14
7819087--7819134	19	2.6	18	80	9	51	35	0	2	62	1.07
7821270--7821320	24	2.1	24	96	0	93	49	3	11	35	1.58
7823948--7824263	150	2.1	150	94	0	544	48	16	10	24	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7824391--7824431	19	2.2	19	86	0	55	80	7	0	12	0.90
7828596--7828636	15	2.7	15	88	0	55	21	0	9	68	1.18
7837109--7837213	24	4.5	22	76	16	70	21	5	0	71	1.13
7837168--7837220	19	2.8	19	75	13	65	26	7	0	66	1.18
7837136--7837210	25	3.2	23	71	16	64	22	5	1	70	1.15
7838684--7838737	17	3.1	18	81	7	58	27	25	3	42	1.72
7843814--7843855	22	1.9	22	85	9	59	30	11	19	38	1.88
7844386--7844432	18	2.9	16	76	14	51	19	6	4	70	1.26
7845177--7845248	23	3.1	22	82	9	90	13	5	1	79	0.98
7845198--7845301	6	16.7	6	71	20	54	18	5	1	74	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100