genome.fa.s113.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  79  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16587294--16587343	26	1.9	26	92	8	84	24	24	22	30	1.99
16588347--16588399	26	2.0	26	89	7	81	26	22	20	30	1.98
16588556--16588608	26	2.0	26	96	0	97	26	28	20	24	1.99
16589398--16589448	26	2.0	26	88	7	77	29	23	17	29	1.97
16596537--16596587	26	2.0	26	88	7	77	29	29	11	29	1.92
16597270--16597322	26	2.0	26	88	0	79	28	26	18	26	1.98
16597296--16597693	159	2.5	158	75	5	399	21	24	30	23	1.99
16597296--16597796	158	3.2	157	73	6	447	20	26	29	23	1.99
16597966--16598018	26	2.0	26	92	0	88	26	26	20	26	1.99
16599020--16599072	26	2.0	26	88	0	79	26	26	22	24	2.00
16599046--16600021	158	6.1	160	77	8	770	19	27	29	22	1.98
16599413--16599884	171	2.8	170	80	8	499	19	27	29	22	1.98
16599046--16599905	329	2.7	317	81	5	901	20	28	29	21	1.98
16599243--16600206	488	2.0	488	79	7	1046	20	27	29	22	1.98
16601247--16601299	26	2.0	26	88	0	79	30	26	18	24	1.98
16601273--16602248	158	6.1	160	78	8	788	20	27	29	22	1.98
16601640--16602111	171	2.8	165	81	7	505	20	28	29	22	1.98
16601273--16602132	329	2.7	317	81	5	910	20	27	29	22	1.98
16603473--16603525	26	2.0	26	88	0	79	30	26	18	24	1.98
16603973--16604025	26	2.0	26	89	7	81	26	20	20	32	1.98
16605095--16605146	26	2.0	26	85	7	70	26	25	17	30	1.97
16605826--16605878	26	2.0	26	89	7	81	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16607317--16607369	26	2.0	26	85	7	72	30	24	16	28	1.97
16608050--16608102	26	2.0	26	88	0	79	26	24	20	28	1.99
16608084--16608417	157	2.1	157	80	5	361	22	25	27	25	2.00
16608391--16608443	26	2.0	26	89	7	81	26	22	22	28	1.99
16609509--16610205	158	4.4	159	76	5	622	18	26	31	23	1.98
16609509--16610205	316	2.2	317	81	3	787	18	26	31	23	1.98
16610891--16610943	26	2.0	26	92	0	88	24	28	22	24	2.00
16611075--16611127	26	2.0	26	89	7	81	28	20	20	30	1.98
16611312--16611988	177	3.8	176	74	9	534	20	24	30	25	1.99
16611777--16611829	26	2.0	26	89	7	81	28	26	20	24	1.99
16612514--16612565	26	2.0	26	92	7	88	26	25	19	28	1.98
16613235--16613736	158	3.2	158	75	8	367	20	26	28	24	1.99
16615645--16615939	159	1.9	158	83	3	387	16	28	32	22	1.96
16615912--16615964	26	2.0	26	89	7	81	26	22	20	30	1.98
16617114--16617163	26	1.9	26	88	8	75	32	24	14	30	1.94
16617006--16617403	212	1.9	213	83	4	518	22	26	28	22	1.99
16619219--16619271	26	2.0	26	92	7	90	26	24	20	28	1.99
16619365--16619389	13	1.9	13	100	0	50	0	48	28	24	1.52
16619915--16619967	26	2.0	26	92	0	88	26	26	20	26	1.99
16620380--16620412	11	3.0	11	95	0	57	21	27	33	18	1.96
16620991--16621043	26	2.0	26	92	0	88	30	26	18	24	1.98
16620969--16621582	184	3.3	184	76	8	626	22	27	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16622399--16622451	26	2.0	26	85	7	72	32	28	15	24	1.95
16622427--16622894	158	2.9	158	77	6	489	19	25	30	23	1.98
16622427--16622927	159	3.2	158	77	7	496	20	25	29	24	1.99
16624349--16624400	26	2.0	26	92	7	88	26	25	19	28	1.98
16624553--16624623	26	2.7	26	95	0	124	28	32	16	22	1.96
16626337--16626389	26	2.0	26	89	7	81	26	24	18	30	1.98
16627063--16627113	26	2.0	26	92	7	86	33	21	15	29	1.94
16627035--16627456	184	2.3	184	84	1	524	21	26	27	24	1.99
16628129--16628634	185	2.8	185	83	3	583	19	25	28	26	1.99
16628561--16628613	26	2.0	26	92	0	88	30	24	15	30	1.95
16628171--16628784	185	3.3	183	80	5	561	20	25	28	24	1.99
16628916--16628968	26	2.0	26	92	0	88	28	28	18	24	1.98
16628505--16629628	343	3.2	341	83	3	1320	19	28	30	22	1.98
16629259--16629311	26	2.0	26	85	7	72	30	26	18	24	1.98
16629326--16629789	159	2.9	159	80	3	531	18	28	31	21	1.97
16630483--16630535	26	2.0	26	92	0	88	30	26	16	26	1.97
16634856--16634895	21	1.9	21	94	0	71	27	30	30	12	1.93
16636311--16636340	9	3.3	9	95	0	51	30	10	40	20	1.85
16641259--16641308	26	1.9	26	91	0	82	24	30	20	26	1.98
16641285--16641649	159	2.3	158	76	5	367	21	27	29	22	1.99
16647614--16648217	301	2.0	301	83	1	764	22	25	29	22	1.99
16647936--16648561	342	1.8	342	81	3	776	21	26	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16649011--16649062	26	2.0	26	92	0	86	28	17	21	32	1.96
16649211--16649262	26	2.0	26	88	7	79	32	15	21	30	1.94
16648784--16649318	196	2.7	195	83	3	617	24	25	25	23	2.00
16651093--16651145	26	2.0	26	88	0	79	28	20	24	26	1.99
16652241--16652741	158	3.2	157	78	5	477	23	29	25	20	1.99
16652722--16652772	26	2.0	26	84	7	68	29	17	23	29	1.97
16653360--16653386	11	2.5	11	100	0	54	18	33	29	18	1.95
16653667--16654246	159	3.7	158	75	4	454	23	31	25	19	1.98
16654220--16654272	26	2.0	26	88	0	79	22	20	28	28	1.99
16654416--16654468	26	2.0	26	82	7	63	30	16	22	30	1.96
16654395--16655471	500	2.2	497	82	3	1263	24	27	27	21	1.99
16655414--16655466	26	2.0	26	92	0	88	26	20	26	26	1.99
16655821--16655873	26	2.0	26	96	0	97	22	20	28	28	1.99
16655616--16657541	185	10.3	184	71	11	800	25	27	25	21	2.00
16656006--16656055	26	1.9	26	83	0	64	26	18	24	32	1.97
16655818--16657541	393	4.6	370	75	10	1369	25	27	25	21	2.00
16656368--16656420	26	2.0	26	96	0	97	24	20	28	26	1.99
16656761--16656813	26	2.0	26	88	0	79	28	20	24	26	1.99
16657154--16657206	26	2.0	26	85	7	72	22	18	24	33	1.97
16657357--16657730	158	2.4	158	85	2	484	25	30	25	18	1.98
16657878--16658380	159	3.2	158	76	7	470	22	27	26	23	2.00
16658493--16658543	26	2.0	26	84	0	66	25	11	29	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16660743--16661174	159	2.7	159	83	2	510	22	29	28	19	1.98
16661219--16661271	26	2.0	26	85	0	70	26	20	26	26	1.99
16665767--16665819	26	2.0	26	85	7	72	26	16	26	30	1.97
16665676--16666057	198	1.9	197	88	1	577	24	27	26	21	1.99
16666464--16666516	26	2.0	26	85	7	72	28	18	24	28	1.98
16666661--16666713	26	2.0	26	92	0	88	28	18	26	26	1.98
16667138--16667188	26	2.0	26	88	7	77	27	19	23	29	1.98
16666158--16668528	674	3.5	670	79	6	2546	23	29	26	20	1.99
16667361--16667862	158	3.2	157	76	7	487	23	29	27	19	1.98
16667360--16667761	159	2.5	158	78	5	427	23	29	28	18	1.98
16667836--16667888	26	2.0	26	89	7	81	28	20	24	26	1.99
16668912--16668973	26	2.4	26	94	0	106	30	24	19	25	1.98
16668946--16669392	159	2.8	159	76	6	433	22	29	29	19	1.98
16669423--16669475	26	2.0	26	92	0	88	24	20	26	28	1.99
16669789--16669841	26	2.0	26	89	7	81	30	22	22	24	1.99
16669814--16670281	159	2.9	157	73	5	431	23	28	26	21	1.99
16670291--16670343	26	2.0	26	92	0	88	24	18	28	28	1.98
16676918--16676970	26	2.0	26	89	7	81	28	20	22	28	1.99
16677261--16677311	26	2.0	26	92	0	84	25	21	27	25	1.99
16678484--16678536	26	2.0	26	92	0	88	24	18	28	28	1.98
16678509--16678974	159	2.9	160	76	6	426	22	28	28	20	1.98
16680003--16680055	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16679641--16680608	528	1.8	527	85	2	1354	23	27	27	21	1.99
16680530--16680582	26	2.0	26	96	0	97	24	20	28	26	1.99
16681221--16681509	159	1.8	158	82	5	377	24	32	26	15	1.96
16680883--16681654	343	2.2	342	83	2	924	25	29	26	19	1.98
16681539--16681591	26	2.0	26	88	0	79	24	16	28	30	1.97
16682447--16682497	26	2.0	26	92	0	84	29	15	27	27	1.96
16683180--16683230	26	2.0	26	92	0	84	29	15	27	27	1.96
16682205--16683665	733	2.0	733	98	0	2818	28	21	22	26	1.99
16683816--16683848	14	2.4	14	94	0	57	18	27	33	21	1.96
16683919--16683970	26	2.0	26	92	7	88	28	19	25	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100