genome.fa.s113.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  34  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9214350--9214404	23	2.4	23	81	0	65	81	5	5	7	0.97
9214320--9214397	28	2.7	28	74	4	66	76	3	7	11	1.12
9214756--9214790	11	3.5	10	88	11	54	0	8	0	91	0.42
9214990--9215018	13	2.1	14	93	6	51	13	10	13	62	1.55
9215304--9215328	11	2.3	11	100	0	50	16	12	0	72	1.13
9223400--9223426	2	13.5	2	100	0	54	48	0	0	51	1.00
9226110--9226181	30	2.4	29	84	6	90	37	0	1	61	1.05
9234638--9234667	2	15.0	2	100	0	60	50	0	0	50	1.00
9235425--9235501	38	2.0	38	87	0	109	31	25	16	25	1.97
9241971--9242023	23	2.3	23	87	6	72	58	1	0	39	1.09
9242572--9242605	17	1.9	18	94	5	61	61	5	0	32	1.20
9242629--9242661	13	2.5	14	85	14	52	42	0	0	57	0.98
9242689--9242722	17	2.1	16	94	5	59	44	0	0	55	0.99
9244591--9244627	8	4.5	8	93	3	56	54	2	0	43	1.14
9248470--9248653	101	1.8	102	82	5	239	33	11	13	41	1.81
9252799--9252836	18	2.1	19	85	5	51	60	5	0	34	1.19
9254442--9254478	19	2.0	19	89	5	58	72	8	0	18	1.08
9257860--9257899	12	3.2	12	96	3	71	82	2	7	7	0.92
9257873--9257915	15	2.6	17	82	14	54	83	0	11	4	0.78
9257860--9257900	13	3.2	13	89	6	66	82	2	7	7	0.91
9258237--9258318	30	2.8	29	81	9	94	78	0	15	6	0.95
9259487--9259525	10	3.7	10	83	10	51	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9260431--9260598	58	2.8	58	86	7	230	48	5	10	36	1.60
9260532--9260673	74	1.9	75	88	5	218	50	4	8	36	1.52
9260443--9260626	59	3.1	58	80	10	194	51	5	8	34	1.56
9260470--9260854	132	2.9	130	80	8	391	48	5	8	37	1.57
9260532--9260676	75	2.0	75	86	5	206	50	4	8	37	1.52
9260630--9260740	57	1.9	57	87	1	159	45	6	10	36	1.64
9260723--9260755	14	2.3	15	89	5	50	60	6	0	33	1.21
9260630--9260749	58	2.1	58	84	3	152	45	5	10	38	1.62
9260921--9260954	16	2.1	16	88	0	50	5	14	0	79	0.91
9265266--9265294	13	2.2	13	100	0	58	34	13	6	44	1.71
9266335--9266365	14	2.2	14	94	0	53	29	3	0	67	1.06
9269214--9269253	2	21.0	2	90	10	66	50	0	0	50	1.00
9269214--9269246	17	1.9	17	100	0	66	48	0	0	51	1.00
9269214--9269253	19	2.1	19	95	0	71	50	0	0	50	1.00
9269394--9269418	2	12.5	2	100	0	50	48	0	0	52	1.00
9271593--9271617	6	4.2	6	100	0	50	84	0	0	16	0.63
9279086--9279111	2	13.0	2	100	0	52	0	50	0	50	1.00
9279236--9279306	23	3.0	24	77	6	63	57	2	7	32	1.40
9279500--9279572	29	2.4	30	84	6	94	50	1	1	46	1.18
9279584--9279625	11	3.9	11	78	3	50	42	0	0	57	0.99
9282979--9283225	120	2.1	120	92	0	404	25	15	27	30	1.96
9286035--9286529	245	2.0	247	94	2	870	41	6	6	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9287235--9287286	23	2.3	23	82	0	59	21	0	11	67	1.22
9288588--9288668	29	2.7	30	84	5	101	51	0	2	45	1.14
9295359--9295396	19	2.0	19	89	0	58	39	5	10	44	1.61
9299860--9299908	22	2.2	22	85	0	62	57	6	12	24	1.58
9304248--9304304	3	19.0	3	96	0	105	31	0	1	66	1.02
9306060--9306099	20	2.0	20	85	9	55	60	0	0	40	0.97
9306056--9306112	22	2.7	21	83	8	62	63	0	0	36	0.95
9315434--9315515	29	2.8	28	85	7	83	57	0	1	41	1.06
9315444--9315515	29	2.4	29	88	6	99	58	0	1	40	1.07
9315454--9315529	29	2.7	28	81	4	91	57	1	1	39	1.15
9315510--9315560	12	4.2	12	80	14	52	50	5	0	43	1.26
9316629--9316688	29	2.1	29	87	0	84	48	1	0	50	1.11
9327182--9327226	22	2.0	22	100	0	90	26	15	13	44	1.83
9330705--9330730	3	8.7	3	100	0	52	30	0	0	69	0.89
9339364--9339397	17	2.0	17	88	0	50	35	0	29	35	1.58
9352165--9352190	2	13.0	2	100	0	52	50	0	0	50	1.00
9356026--9356057	16	2.0	16	93	0	55	53	9	0	37	1.34
9356684--9356717	2	17.5	2	87	6	52	47	0	2	50	1.16
9360468--9360515	13	3.7	13	83	10	71	43	0	2	54	1.12
9360471--9360512	12	3.3	12	84	12	57	42	0	2	54	1.13
9360800--9360832	18	1.9	18	88	11	52	75	0	3	21	0.93
9362004--9362051	22	2.3	20	83	13	62	29	14	4	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9363744--9363788	18	2.5	18	82	7	56	17	0	6	75	1.01
9365275--9365301	14	1.9	14	100	0	54	14	3	22	59	1.51
9365391--9365740	193	1.8	193	81	10	439	46	6	10	37	1.63
9367172--9367198	2	13.5	2	100	0	54	51	0	0	48	1.00
9367417--9367454	2	19.0	2	88	0	58	44	0	2	52	1.14
9369799--9369823	1	25.0	1	100	0	50	0	100	0	0	0.00
9370753--9370787	16	2.1	17	89	5	54	8	5	5	80	1.03
9374356--9374399	23	1.9	23	95	0	79	27	27	25	20	1.99
9374357--9374406	23	2.2	23	88	0	73	32	28	20	20	1.97
9376892--9377076	94	2.0	94	92	0	307	38	10	14	36	1.81
9379624--9379654	2	15.5	2	100	0	62	48	0	0	51	1.00
9382759--9382793	2	18.0	2	94	5	63	51	0	0	48	1.00
9386085--9386788	59	11.8	56	83	9	746	45	7	13	33	1.72
9386106--9386788	297	2.3	295	89	6	1013	45	7	13	33	1.72
9388039--9388068	15	2.0	15	93	0	51	43	0	0	56	0.99
9388291--9388333	22	2.0	22	81	9	52	51	11	0	37	1.39
9389855--9389916	3	22.0	3	77	9	60	38	0	0	61	0.96
9394198--9394240	19	2.3	19	88	4	61	55	2	0	41	1.12
9394338--9394405	18	3.9	16	75	19	57	44	1	0	54	1.09
9394394--9394447	27	2.0	27	82	10	67	51	1	1	44	1.22
9394648--9394695	13	3.7	13	78	10	53	22	62	4	10	1.44
9394649--9394703	26	2.2	25	93	3	92	21	60	5	12	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9395008--9395043	17	2.2	16	90	5	54	80	13	5	0	0.88
9395122--9395163	16	2.4	18	81	18	54	80	2	16	0	0.81
9395125--9395163	18	2.2	18	86	9	53	79	2	17	0	0.84
9395690--9395739	18	2.8	18	79	11	57	22	0	6	72	1.07
9403153--9403183	2	16.0	2	93	6	55	51	0	0	48	1.00
9404138--9404250	34	3.3	34	77	11	99	49	13	2	34	1.56
9410716--9410788	38	1.9	38	85	0	101	31	9	27	31	1.89
9415638--9415662	3	8.3	3	100	0	50	32	0	0	68	0.90
9416427--9416467	21	1.9	22	85	14	59	26	4	2	65	1.25
9417348--9417376	3	9.7	3	100	0	58	34	0	31	34	1.58
9417567--9417712	43	3.4	44	79	6	163	39	11	10	37	1.77
9423321--9423347	14	1.9	14	100	0	54	48	0	0	51	1.00
9423561--9423680	16	7.5	15	71	14	71	20	2	31	45	1.64
9425037--9425088	9	5.6	9	77	6	50	17	1	0	80	0.80
9425039--9425085	16	2.8	17	77	6	51	19	2	0	78	0.85
9426738--9426775	9	4.4	9	83	9	53	18	0	2	78	0.86
9426738--9426776	18	2.2	18	90	4	62	17	0	2	79	0.84
9427783--9427829	6	7.7	6	80	4	58	76	0	0	23	0.78
9428018--9428115	50	2.0	49	88	6	144	39	13	19	27	1.89
9428560--9428598	19	2.0	20	95	5	71	30	17	10	41	1.83
9429522--9429559	8	4.8	8	86	0	58	18	2	0	78	0.86
9429521--9429560	9	4.8	9	81	12	50	17	2	0	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9433109--9433144	9	4.0	9	85	0	54	44	22	22	11	1.84
9433131--9433185	12	4.6	12	81	0	65	49	23	18	9	1.76
9433196--9433256	12	5.1	12	87	0	86	32	8	32	26	1.86
9433212--9433256	3	15.0	3	85	0	63	33	6	33	26	1.83
9433190--9433252	6	10.5	6	78	0	63	34	9	31	23	1.87
9433259--9433283	7	3.6	7	100	0	50	60	28	0	12	1.32
9436799--9436874	32	2.4	31	85	8	100	44	10	9	35	1.71
9438345--9438419	22	3.5	22	71	12	75	42	0	0	57	0.98
9438345--9438469	17	6.8	19	73	19	97	47	0	0	52	1.00
9438364--9438444	15	5.9	15	77	18	70	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100