genome.fa.s113.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  84  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17013811--17013862	26	2.0	26	92	0	86	28	21	19	30	1.97
17014349--17014401	26	2.0	26	85	7	72	32	20	22	24	1.98
17014834--17014892	26	2.3	26	90	0	91	25	16	27	30	1.97
17015558--17015610	26	2.0	26	89	7	81	26	20	24	28	1.99
17015584--17016082	157	3.2	158	75	6	429	24	28	26	21	1.99
17016768--17016820	26	2.0	26	85	7	72	28	22	22	26	1.99
17017110--17017162	26	2.0	26	85	0	70	26	16	26	30	1.97
17017347--17017703	159	2.2	157	81	5	405	22	29	28	18	1.98
17018470--17018626	83	1.9	83	85	2	217	17	36	26	18	1.93
17021520--17021571	26	2.0	26	85	11	70	30	17	23	28	1.97
17021864--17021916	26	2.0	26	89	7	81	28	20	24	26	1.99
17022587--17022637	26	2.0	26	92	7	86	29	19	23	27	1.98
17024242--17024502	135	1.9	135	82	3	328	26	27	26	19	1.99
17027917--17028025	45	2.4	45	87	0	164	19	27	38	14	1.91
17028109--17029013	45	20.3	44	71	8	311	19	29	34	16	1.94
17028332--17028480	64	2.3	64	87	0	199	20	27	35	16	1.94
17028428--17029013	90	6.5	90	78	2	453	19	29	33	16	1.94
17033526--17033555	12	2.5	12	94	0	51	10	46	26	16	1.78
17033725--17033777	26	2.0	26	96	0	97	28	24	24	22	2.00
17034693--17034727	11	3.2	11	91	0	52	8	37	34	20	1.83
17034858--17036838	45	44.1	45	82	2	2055	15	36	29	17	1.91
17036809--17036866	28	2.1	28	100	0	116	0	32	46	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17036764--17036911	73	2.0	73	90	5	237	8	35	38	18	1.80
17036837--17037055	45	4.9	45	88	3	325	11	36	34	16	1.86
17036720--17036956	118	2.0	117	95	0	420	9	36	37	17	1.82
17036675--17037001	163	2.0	162	92	1	539	10	36	35	17	1.84
17044507--17044586	40	2.0	40	90	0	124	12	38	36	12	1.81
17044954--17045006	26	2.0	26	92	0	88	24	22	28	24	2.00
17044644--17045251	172	3.5	172	84	7	881	17	33	34	14	1.90
17045762--17045796	11	3.2	11	91	0	52	8	37	34	20	1.83
17045991--17049320	45	74.0	45	82	1	3410	16	33	31	18	1.93
17049980--17050014	11	3.2	11	87	0	52	8	28	34	28	1.87
17050185--17050672	45	10.9	45	78	2	419	17	35	29	17	1.93
17050185--17050696	90	5.7	90	79	2	467	17	35	29	17	1.93
17058061--17058136	39	1.9	39	89	0	116	15	30	43	10	1.81
17058515--17058567	26	2.0	26	96	0	97	30	22	22	24	1.99
17058678--17058729	21	2.5	21	93	0	86	13	38	25	23	1.91
17059688--17059986	134	2.2	136	82	4	374	15	33	31	19	1.93
17059966--17060008	22	2.0	22	100	0	86	23	46	18	11	1.82
17059688--17059986	45	6.7	45	80	3	307	15	33	31	19	1.93
17059988--17060316	45	7.3	45	83	0	397	15	35	30	18	1.93
17059928--17060053	67	1.9	67	86	0	180	19	38	26	15	1.92
17059876--17060098	112	2.0	112	90	0	356	16	37	29	17	1.91
17059836--17060126	157	1.9	156	84	3	397	15	34	31	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17065130--17065177	24	2.0	24	100	0	96	33	20	29	16	1.95
17065829--17065876	25	1.9	25	83	8	62	27	22	14	35	1.93
17082662--17082713	18	2.9	19	77	16	65	46	5	9	38	1.61
17082229--17083677	181	8.1	174	74	10	851	40	7	9	41	1.67
17082286--17083508	359	3.4	355	76	9	868	40	7	9	42	1.67
17083764--17084737	181	5.4	180	76	7	798	39	7	8	44	1.63
17083754--17084737	363	2.7	354	78	7	968	39	7	8	44	1.63
17084626--17084865	129	1.8	131	81	8	301	36	7	9	46	1.66
17085232--17085288	7	8.7	7	79	11	59	17	0	38	43	1.49
17085232--17085288	13	4.4	13	80	6	62	17	0	38	43	1.49
17086115--17089851	181	20.5	180	71	12	1653	40	8	9	41	1.67
17086253--17087526	182	7.1	180	77	6	563	40	8	9	41	1.68
17086338--17093045	539	12.4	531	70	14	1499	40	8	9	42	1.67
17087925--17089851	181	10.8	181	78	6	1654	41	8	9	40	1.67
17087901--17089699	358	5.0	361	78	6	1780	41	8	9	41	1.66
17089547--17089851	166	1.8	165	83	3	398	42	7	7	41	1.63
17089730--17089996	133	2.0	133	80	5	299	41	8	7	42	1.64
17090106--17093311	181	17.8	180	75	8	2037	40	7	9	42	1.66
17089907--17093325	362	9.5	359	75	6	2371	40	7	9	42	1.66
17093937--17093993	22	2.6	22	97	0	105	31	8	5	54	1.53
17094576--17094616	18	2.3	18	86	0	64	53	0	2	43	1.13
17094416--17095101	178	3.8	179	75	6	570	43	9	8	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17093962--17096842	181	15.9	182	73	9	1491	42	9	8	39	1.68
17095363--17096842	182	8.2	180	76	6	1064	41	9	8	40	1.69
17097097--17098973	176	10.6	180	74	10	1204	40	10	8	39	1.70
17097097--17102717	181	31.6	176	74	9	2938	41	10	8	39	1.69
17097205--17102710	352	15.5	350	73	11	2261	41	10	8	39	1.69
17098480--17098798	175	1.8	174	83	6	421	40	10	8	40	1.70
17099904--17100958	182	5.8	181	73	7	424	42	9	8	39	1.68
17098969--17113828	536	27.2	538	67	14	2869	41	10	8	40	1.68
17102574--17102997	231	1.8	232	79	3	494	42	9	7	40	1.66
17103268--17106814	540	6.6	534	75	8	2456	42	10	8	39	1.69
17103268--17113018	181	53.8	181	70	12	2838	41	10	8	40	1.68
17103277--17106894	541	6.7	540	74	8	1581	42	10	8	39	1.69
17107049--17107945	358	2.5	361	77	6	802	41	10	8	39	1.69
17108242--17108283	20	2.1	20	86	8	59	30	4	9	54	1.53
17108999--17112918	361	10.9	357	72	10	1234	40	9	8	41	1.68
17112889--17113196	145	2.1	147	82	8	387	40	9	8	41	1.68
17113363--17113411	18	2.8	17	78	12	55	34	10	8	46	1.67
17113034--17113830	182	4.4	178	81	3	778	40	10	7	41	1.68
17112361--17113729	690	2.0	683	79	7	1456	40	9	8	41	1.68
17113202--17113850	355	1.8	357	81	4	808	41	10	7	40	1.66
17119130--17119293	62	2.7	63	78	6	183	36	15	15	32	1.89
17120233--17120268	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17120233--17120265	17	1.9	17	100	0	66	51	0	0	48	1.00
17120848--17120994	15	9.5	15	78	11	138	51	2	0	45	1.15
17120874--17120906	13	2.6	13	90	4	50	51	9	0	39	1.34
17120929--17120968	18	2.2	18	90	0	62	55	2	0	42	1.13
17120857--17120994	33	4.5	31	79	11	144	52	2	0	44	1.16
17120838--17121012	48	3.9	45	78	14	182	50	2	0	46	1.13
17120964--17121005	14	3.1	14	86	6	61	47	0	0	52	1.00
17122570--17122607	20	1.9	20	89	10	60	76	2	7	13	1.11
17122586--17122631	23	2.0	24	83	12	60	69	2	10	17	1.27
17123351--17123575	116	1.9	116	83	5	285	32	22	15	29	1.95
17125275--17125585	84	3.7	82	75	4	280	37	17	13	31	1.89
17125608--17125645	14	2.6	14	95	4	67	42	10	13	34	1.78
17127041--17127091	19	2.6	19	78	12	50	3	13	0	82	0.81
17132151--17132192	22	1.9	22	85	0	57	80	2	4	11	0.95
17133293--17133369	38	2.0	38	97	0	145	44	22	7	25	1.79
17135394--17135423	2	15.0	2	100	0	60	50	0	0	50	1.00
17141845--17141885	22	1.9	21	90	5	64	58	2	0	39	1.11
17144309--17144350	21	2.0	21	100	0	84	38	4	19	38	1.73
17145743--17145794	19	2.5	21	78	18	63	28	3	17	50	1.64
17150044--17150097	16	3.2	16	79	7	54	25	7	5	61	1.45
17150044--17150115	17	4.2	17	77	7	65	26	5	6	61	1.44
17153894--17153974	34	2.4	34	78	13	87	41	8	2	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17159251--17159301	21	2.5	21	96	3	95	49	0	0	50	1.00
17159286--17159325	16	2.7	14	88	7	53	55	0	0	45	0.99
17159291--17159327	8	4.6	8	86	0	56	56	0	0	43	0.99
17159554--17159597	20	2.2	20	83	0	52	50	4	0	45	1.22
17159595--17159636	3	14.0	3	94	0	75	30	0	2	66	1.04
17159635--17159670	3	12.0	3	93	0	63	2	0	30	66	1.06
17159602--17159666	9	7.2	9	91	0	58	16	0	15	67	1.23
17162019--17162057	12	3.2	12	79	13	53	33	0	0	66	0.92
17165168--17165218	27	2.0	27	85	14	74	62	3	33	0	1.13
17169144--17169330	43	4.3	43	82	4	232	43	15	12	27	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100