genome.fa.s113.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  7  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615553--1615577	10	2.5	10	100	0	50	28	0	0	72	0.86
1619236--1619304	35	2.0	35	88	5	104	20	23	20	36	1.95
1620317--1620386	34	2.1	34	89	5	106	22	8	22	45	1.79
1621483--1621545	33	1.9	33	83	6	83	11	7	50	30	1.66
1621496--1621559	33	1.9	33	87	6	94	10	7	51	29	1.65
1628040--1628065	8	3.2	8	100	0	52	38	0	0	61	0.96
1628327--1628388	30	2.0	30	87	3	88	38	3	0	58	1.15
1628309--1628388	31	2.6	30	80	3	88	40	2	1	56	1.21
1628624--1628658	18	1.9	18	88	0	52	34	5	2	57	1.37
1632988--1633014	1	27.0	1	100	0	54	0	0	0	100	0.00
1633505--1633556	25	2.1	25	89	3	79	34	7	1	55	1.39
1633596--1633670	37	2.0	37	92	0	123	56	1	2	40	1.22
1634810--1634835	2	13.0	2	100	0	52	0	0	50	50	1.00
1645916--1645945	2	15.0	2	92	0	51	53	0	46	0	1.00
1645916--1645950	12	2.9	12	91	0	52	54	0	42	2	1.15
1655870--1655919	21	2.3	22	80	19	61	20	4	18	58	1.55
1655967--1656008	19	2.2	19	95	0	75	7	9	30	52	1.61
1661294--1661322	2	14.5	2	100	0	58	51	0	0	48	1.00
1661393--1661431	2	20.0	2	94	5	71	0	51	0	48	1.00
1661431--1661456	2	13.0	2	100	0	52	50	0	0	50	1.00
1665770--1665807	12	3.2	12	85	7	51	39	2	0	57	1.12
1666363--1666407	21	2.1	21	100	0	90	22	22	8	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1675471--1675500	4	7.8	4	92	7	53	80	0	0	20	0.72
1675459--1675500	11	3.7	11	87	6	57	76	0	2	21	0.90
1675615--1675719	52	2.0	52	94	0	183	34	13	23	28	1.93
1691565--1691595	10	3.1	10	95	0	53	6	0	41	51	1.27
1693958--1693998	2	20.5	2	100	0	82	51	48	0	0	1.00
1696418--1696470	23	2.4	22	81	9	63	64	1	3	30	1.22
1700154--1700198	21	2.1	21	84	8	56	53	2	0	44	1.13
1705828--1705872	17	2.8	15	80	12	54	62	13	13	11	1.55
1716804--1716833	13	2.2	14	94	5	53	60	0	0	40	0.97
1722364--1722389	9	2.9	9	100	0	52	53	23	23	0	1.46
1725097--1725127	15	2.1	15	94	5	55	35	12	29	22	1.91
1735161--1735762	299	2.0	299	100	0	1204	29	14	21	34	1.93
1738603--1738661	32	1.9	30	82	6	73	40	1	3	54	1.27
1739396--1739454	31	1.9	31	89	0	91	59	1	18	20	1.47
1741818--1741858	20	2.0	21	95	4	75	9	29	29	31	1.89
1743260--1743287	10	2.8	10	100	0	56	32	17	28	21	1.96
1746664--1746726	3	21.0	3	78	12	67	65	3	1	30	1.18
1746674--1746728	14	3.9	14	81	13	69	69	0	1	29	0.99
1754066--1754113	25	2.0	25	87	4	71	47	2	0	50	1.12
1754143--1754190	19	2.6	18	80	9	51	52	2	0	45	1.12
1754183--1754223	11	3.5	11	84	12	55	29	0	0	70	0.87
1754183--1754219	13	2.9	13	88	11	51	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754240--1754416	88	2.0	90	87	5	261	42	11	9	37	1.72
1756489--1756525	3	12.3	3	100	0	74	32	0	0	67	0.91
1761273--1761311	20	2.0	20	85	5	53	51	20	12	15	1.76
1768017--1768064	22	2.2	22	100	0	96	50	4	4	41	1.41
1768462--1768516	21	2.5	20	82	14	56	30	0	5	63	1.17
1779688--1779720	16	2.1	16	88	11	50	33	0	63	3	1.10
1781274--1781330	30	1.9	30	92	7	98	52	0	0	47	1.00
1781750--1781831	8	10.8	8	71	18	50	50	0	0	50	1.00
1781744--1781801	21	2.7	22	81	7	75	51	0	0	48	1.00
1781723--1781832	53	2.2	53	84	12	151	50	0	0	48	1.07
1781768--1781829	15	4.0	15	79	8	70	50	0	0	50	1.00
1781721--1781845	35	3.6	34	77	11	112	52	0	0	47	1.06
1781721--1781805	23	3.6	24	76	16	81	51	1	0	47	1.08
1781719--1781844	12	11.2	11	67	15	62	52	0	0	46	1.06
1781794--1781847	24	2.2	24	83	0	72	51	0	0	48	1.00
1781714--1781839	27	4.9	24	70	14	83	52	0	0	46	1.06
1781771--1781927	32	5.0	30	69	21	106	51	1	0	46	1.13
1785960--1785984	1	25.0	1	100	0	50	0	0	0	100	0.00
1787383--1787412	14	2.1	14	93	0	51	20	0	13	66	1.24
1790646--1790705	26	2.3	27	88	8	88	40	1	5	53	1.33
1795830--1795857	9	3.1	9	100	0	56	78	0	0	21	0.75
1808100--1808134	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1808471--1808506	11	3.3	11	92	0	63	25	38	0	36	1.56
1808570--1808620	15	3.4	14	77	17	50	49	3	1	45	1.32
1811734--1811792	27	2.2	27	96	3	111	35	23	16	23	1.95
1812795--1812863	30	2.3	30	82	0	93	57	1	2	37	1.22
1814580--1814631	18	2.9	18	88	2	70	67	19	5	7	1.36
1816544--1816572	2	14.5	2	100	0	58	51	48	0	0	1.00
1818092--1818170	38	2.1	38	97	0	149	36	10	17	35	1.84
1818301--1818374	30	2.5	30	91	2	114	37	4	0	58	1.17
1818352--1818386	18	1.9	19	88	11	56	42	5	2	48	1.41
1818404--1818500	30	3.3	30	78	8	101	46	1	2	50	1.20
1818545--1818603	24	2.6	21	79	15	55	27	1	5	66	1.22
1825369--1825403	16	2.1	17	89	5	54	45	0	0	54	0.99
1842978--1843020	22	2.0	22	90	0	68	37	9	6	46	1.63
1843059--1843370	158	2.0	159	86	4	443	28	10	9	51	1.67
1851607--1851661	26	2.2	26	87	6	78	16	18	12	52	1.74
1855354--1855396	22	2.0	22	85	0	59	39	9	6	44	1.64
1886032--1886082	25	2.0	25	88	7	77	39	11	7	41	1.71
1886153--1886206	24	2.2	25	87	6	76	50	0	0	50	1.00
1886242--1886275	14	2.4	14	85	0	50	67	0	0	32	0.91
1886233--1886265	17	2.0	17	88	5	50	72	0	0	27	0.85
1886650--1886681	9	3.4	10	87	12	50	53	0	0	46	1.00
1889497--1889529	14	2.3	15	89	5	50	42	3	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1890718--1890816	30	3.3	30	71	20	91	46	0	2	51	1.12
1891559--1891606	6	8.0	6	85	0	51	54	33	4	8	1.50
1891560--1891606	9	5.2	9	86	0	58	55	34	4	6	1.45
1892206--1892408	100	2.0	100	100	0	406	29	11	15	44	1.81
1897417--1897449	13	2.4	14	90	10	50	33	3	3	60	1.27
1897718--1897779	6	9.8	6	77	18	56	46	0	1	51	1.10
1897713--1897777	33	2.0	31	91	5	103	47	0	1	50	1.10
1897826--1897879	22	2.5	22	76	11	58	46	0	0	53	1.00
1897839--1897879	20	2.0	21	85	4	57	48	0	0	51	1.00
1899045--1899069	7	3.6	7	100	0	50	24	28	0	48	1.52
1905045--1905075	2	15.5	2	100	0	62	51	0	0	48	1.00
1905075--1905104	2	15.0	2	100	0	60	50	0	50	0	1.00
1906553--1906595	20	2.1	21	83	12	54	44	0	4	51	1.22
1906856--1906890	17	2.1	17	88	0	52	57	0	0	42	0.99
1906855--1906892	6	6.5	6	90	6	51	55	0	0	44	0.99
1911304--1911345	11	3.8	11	87	0	66	23	0	26	50	1.50
1911307--1911359	22	2.5	22	87	9	74	26	1	20	50	1.58
1911371--1911526	52	3.0	52	79	10	167	41	7	24	26	1.82
1921113--1921138	10	2.6	10	100	0	52	92	0	0	7	0.39
1921726--1921755	15	2.0	15	93	0	51	86	3	0	10	0.67
1921584--1921940	192	1.9	191	80	10	426	47	5	8	37	1.59
1925467--1925499	10	3.4	10	87	4	50	90	9	0	0	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925870--1925913	7	6.1	7	80	15	54	81	0	15	2	0.78
1925872--1925914	20	2.1	21	91	4	70	83	0	13	2	0.74
1927088--1927282	21	8.7	21	79	9	129	42	10	12	35	1.76
1927128--1927197	25	2.8	25	91	0	104	48	11	5	34	1.63
1927764--1927940	40	4.4	41	81	2	187	28	13	15	42	1.84
1927781--1927938	80	2.0	81	85	1	219	28	13	14	43	1.84
1927764--1927962	41	4.9	41	81	2	204	28	12	16	42	1.84
1928537--1928578	19	2.3	18	84	8	57	14	0	4	80	0.86
1932016--1932059	2	22.0	2	90	0	70	50	2	0	47	1.13
1935503--1935556	22	2.3	24	90	9	85	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100