genome.fa.s113.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  76  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16350088--16350137	26	1.9	26	88	8	75	26	22	20	32	1.98
16352594--16352646	26	2.0	26	96	0	97	26	24	20	28	1.99
16353289--16353341	26	2.0	26	88	0	79	28	26	18	26	1.98
16352998--16353364	195	1.9	196	82	4	472	21	23	27	27	1.99
16353486--16353538	26	2.0	26	92	0	88	24	15	28	32	1.95
16353707--16354148	157	2.8	158	83	1	546	21	28	29	20	1.98
16353708--16354200	157	3.1	156	82	2	434	22	28	27	20	1.99
16354182--16354233	26	2.0	26	88	0	77	26	17	26	28	1.97
16354891--16354943	26	2.0	26	88	0	79	26	16	28	28	1.97
16354574--16355622	343	3.1	337	76	11	1005	23	28	26	20	1.99
16354916--16355325	158	2.6	159	75	5	382	24	28	26	20	1.99
16354939--16355445	159	3.2	158	74	6	479	24	30	25	19	1.98
16356988--16357043	26	2.2	26	87	6	78	30	17	21	30	1.96
16357331--16357383	26	2.0	26	92	0	88	24	18	28	28	1.98
16357999--16358051	26	2.0	26	89	7	81	30	18	24	26	1.98
16358024--16358460	159	2.7	160	77	10	435	22	28	29	19	1.98
16359866--16359918	26	2.0	26	92	7	90	28	20	24	26	1.99
16360063--16360115	26	2.0	26	85	0	70	30	16	24	28	1.97
16360088--16360595	159	3.2	157	78	7	531	23	30	26	19	1.98
16360569--16360621	26	2.0	26	88	0	79	26	18	26	28	1.98
16360704--16361881	587	2.0	588	90	1	1846	26	22	21	28	1.99
16361877--16361929	26	2.0	26	82	13	65	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16361903--16362404	159	3.2	157	72	10	428	22	29	27	20	1.99
16362732--16363101	159	2.3	159	78	5	370	23	29	25	21	1.99
16363983--16364035	26	2.0	26	96	0	97	24	20	28	26	1.99
16364167--16364219	26	2.0	26	85	7	72	30	18	22	28	1.98
16363798--16364378	184	3.2	183	79	7	581	25	27	24	22	2.00
16364193--16364695	159	3.2	156	75	8	403	23	29	26	20	1.99
16364669--16364721	26	2.0	26	88	0	79	26	18	26	28	1.98
16370986--16371038	26	2.0	26	89	7	81	28	18	24	28	1.98
16371828--16371880	26	2.0	26	92	0	88	24	18	28	28	1.98
16372038--16372088	26	2.0	26	88	7	77	29	19	21	29	1.98
16372378--16372430	26	2.0	26	92	0	88	30	13	24	32	1.93
16372623--16372675	26	2.0	26	92	7	90	28	20	24	26	1.99
16372970--16373020	26	2.0	26	92	0	84	23	21	27	27	1.99
16373175--16373878	159	4.4	159	83	2	684	23	31	27	18	1.97
16373186--16373874	318	2.2	317	80	4	753	23	31	26	17	1.97
16374468--16374520	26	2.0	26	96	0	97	24	20	28	26	1.99
16374325--16374678	183	1.9	183	82	5	437	22	28	27	21	1.99
16373491--16375511	500	4.0	497	81	5	2101	22	29	27	20	1.99
16374494--16374995	158	3.2	157	76	4	508	21	29	27	20	1.98
16376177--16376229	26	2.0	26	92	0	88	28	20	20	30	1.98
16376202--16376509	158	1.9	158	80	1	357	23	30	28	17	1.97
16376519--16376571	26	2.0	26	85	7	72	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16378051--16378103	26	2.0	26	85	0	70	26	16	24	32	1.97
16379631--16379680	26	1.9	26	83	0	64	30	14	26	30	1.94
16386852--16386878	11	2.5	11	100	0	54	11	25	37	25	1.89
16386948--16387000	26	2.0	26	92	7	90	30	16	22	30	1.96
16387291--16387343	26	2.0	26	85	0	70	26	18	24	30	1.98
16387488--16387540	26	2.0	26	85	7	72	30	18	22	28	1.98
16387737--16387774	19	2.0	19	100	0	76	21	21	36	21	1.95
16387841--16387893	26	2.0	26	89	7	81	28	18	24	28	1.98
16388856--16388908	26	2.0	26	89	7	81	24	15	30	30	1.95
16389543--16389595	26	2.0	26	89	7	81	33	20	18	26	1.96
16391145--16391195	26	2.0	26	88	7	77	29	13	25	31	1.94
16392695--16392747	26	2.0	26	88	0	79	24	20	28	26	1.99
16393391--16393443	26	2.0	26	82	7	63	33	18	20	26	1.96
16393732--16393784	26	2.0	26	92	7	90	30	20	22	26	1.98
16394429--16394481	26	2.0	26	85	0	70	26	20	24	28	1.99
16395151--16395229	26	3.0	26	94	3	133	30	20	22	26	1.98
16395203--16395698	159	3.1	158	73	5	433	23	30	26	20	1.99
16396703--16396755	26	2.0	26	92	0	88	26	20	26	26	1.99
16396545--16397089	184	3.0	184	80	5	539	25	27	25	21	1.99
16396887--16396939	26	2.0	26	88	0	79	30	18	20	30	1.97
16397349--16397401	26	2.0	26	88	0	79	24	18	26	30	1.98
16398071--16398123	26	2.0	26	89	7	81	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16398636--16399102	158	2.9	158	76	5	440	23	28	26	20	1.99
16399112--16399164	26	2.0	26	89	7	81	28	18	22	30	1.98
16398951--16399577	343	1.8	343	83	5	829	25	28	26	19	1.99
16400178--16400230	26	2.0	26	92	7	90	28	20	24	26	1.99
16401026--16401085	26	2.4	26	83	10	72	28	16	25	30	1.97
16400861--16401216	197	1.8	197	79	3	421	23	28	25	22	1.99
16401190--16401593	158	2.6	158	76	5	413	24	32	24	18	1.97
16401687--16401738	26	2.0	26	88	7	79	30	19	23	26	1.98
16402401--16402453	26	2.0	26	88	0	79	26	18	26	28	1.98
16403071--16403123	26	2.0	26	89	7	81	28	18	24	28	1.98
16410707--16410757	26	2.0	26	92	0	84	31	21	19	27	1.97
16411245--16411294	26	1.9	26	88	8	75	32	22	20	26	1.98
16412653--16412705	26	2.0	26	82	13	65	33	15	22	28	1.94
16413218--16413663	159	2.8	159	72	11	369	24	30	25	18	1.98
16414181--16414233	26	2.0	26	92	0	88	24	18	28	28	1.98
16414903--16414954	26	2.0	26	92	7	88	28	19	25	26	1.98
16415245--16415297	26	2.0	26	92	0	88	26	20	26	26	1.99
16415969--16416021	26	2.0	26	89	7	81	28	18	24	28	1.98
16416311--16416363	26	2.0	26	89	7	81	24	16	28	30	1.97
16416505--16417008	158	3.2	158	75	5	392	24	29	25	20	1.99
16416982--16417034	26	2.0	26	96	0	97	24	20	28	26	1.99
16416666--16417457	343	2.3	343	83	2	964	23	29	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16419088--16419140	26	2.0	26	89	7	81	28	20	24	26	1.99
16419000--16419387	197	2.0	196	86	1	535	23	27	28	20	1.99
16419310--16419714	159	2.5	159	75	3	386	23	29	27	19	1.98
16419983--16420035	26	2.0	26	88	0	79	26	18	26	28	1.98
16418795--16420100	698	1.9	690	80	6	1531	23	28	27	20	1.99
16420338--16420390	26	2.0	26	92	0	88	24	18	28	28	1.98
16420524--16421124	184	3.3	184	78	3	571	25	26	24	22	2.00
16420913--16420965	26	2.0	26	88	0	79	24	16	28	30	1.97
16421415--16421467	26	2.0	26	85	7	72	28	20	22	28	1.99
16421723--16421775	26	2.0	26	89	7	81	26	18	26	28	1.98
16422433--16422485	26	2.0	26	92	0	88	24	18	28	28	1.98
16423132--16423182	26	2.0	26	84	7	68	29	17	23	29	1.97
16424052--16424103	26	2.0	26	88	7	79	30	17	25	26	1.97
16425310--16425362	26	2.0	26	92	0	88	24	18	30	26	1.98
16427902--16427950	23	2.1	23	96	0	89	30	28	4	36	1.76
16431889--16432309	185	2.3	184	81	3	454	26	28	24	19	1.99
16435170--16435222	26	2.0	26	89	7	81	28	18	24	28	1.98
16435011--16435380	184	2.0	184	84	4	487	24	28	25	21	1.99
16434826--16435539	343	2.1	343	81	4	823	24	28	26	21	1.99
16435195--16435718	159	3.3	159	82	1	604	23	29	26	19	1.98
16435838--16435890	26	2.0	26	92	0	88	24	18	28	28	1.98
16437081--16437131	26	2.0	26	88	7	77	31	17	21	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16437424--16437476	26	2.0	26	85	0	70	26	18	28	26	1.98
16437804--16438915	342	3.2	339	82	4	1053	24	28	26	20	1.99
16438805--16438857	26	2.0	26	92	0	88	24	18	28	28	1.98
16439805--16439857	26	2.0	26	85	0	70	26	18	28	26	1.98
16440844--16440896	26	2.0	26	85	0	70	24	16	28	30	1.97
16440185--16441298	343	3.3	342	81	4	1224	23	28	27	20	1.99
16441187--16441239	26	2.0	26	92	0	88	24	18	28	28	1.98
16441165--16441519	196	1.8	196	80	2	426	24	24	27	23	2.00
16442460--16442512	26	2.0	26	89	7	81	30	18	22	28	1.98
16442485--16442926	159	2.8	159	85	0	562	24	31	27	16	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100