genome.fa.s113.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  42  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10850154--10850258	17	6.7	15	73	19	63	0	12	4	81	0.88
10850182--10850259	34	2.3	32	84	6	93	1	11	5	82	0.89
10850530--10850584	27	2.1	26	86	10	76	7	9	1	81	0.93
10850575--10850676	53	1.9	52	86	2	141	16	14	12	55	1.69
10851190--10851222	17	1.9	17	100	0	66	66	0	12	21	1.23
10853490--10853572	39	2.1	40	86	2	114	60	4	16	18	1.53
10854555--10854596	18	2.4	18	92	4	68	78	4	2	14	1.01
10854554--10854629	24	3.2	24	80	9	77	75	3	5	15	1.14
10854555--10854622	18	3.8	17	71	19	50	75	4	4	16	1.13
10854897--10854921	12	2.1	12	100	0	50	56	16	0	28	1.41
10854879--10854946	31	2.2	31	91	0	109	47	17	5	29	1.71
10855464--10855531	3	23.0	3	73	8	50	63	2	2	30	1.24
10856135--10856173	14	2.6	15	84	8	53	25	0	7	66	1.18
10856529--10856565	5	7.8	5	82	11	51	16	2	0	81	0.81
10856515--10856564	23	2.2	23	85	7	66	18	8	0	74	1.06
10856533--10856574	18	2.3	18	84	8	50	23	2	0	73	0.94
10856529--10856589	23	2.7	23	82	2	61	22	1	0	75	0.89
10856801--10856838	3	13.0	3	88	5	60	68	2	0	28	1.03
10856883--10856940	19	2.9	19	82	14	57	75	10	0	13	1.04
10856883--10856939	25	2.3	26	88	8	84	75	10	0	14	1.05
10857552--10857585	16	2.1	16	89	10	52	5	11	0	82	0.83
10857557--10857615	21	2.6	24	81	7	70	3	13	3	79	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857557--10857612	24	2.4	22	82	14	67	3	12	3	80	0.97
10858036--10858114	40	2.0	40	92	0	131	45	17	11	25	1.82
10861397--10862348	328	2.8	329	91	7	1438	24	21	17	37	1.94
10863937--10864232	147	2.0	150	93	2	508	23	23	15	36	1.93
10864496--10864598	27	3.8	27	83	5	136	26	17	20	35	1.94
10864489--10864598	54	2.0	54	89	0	166	27	18	20	34	1.95
10867473--10867629	52	3.0	52	89	0	215	24	24	10	41	1.85
10867653--10867695	11	3.9	11	93	0	77	51	27	0	20	1.48
10867650--10867696	22	2.1	22	100	0	94	46	27	0	25	1.53
10867935--10867998	25	2.6	25	84	0	83	20	40	7	31	1.81
10868553--10868657	52	2.0	52	87	3	149	24	27	9	38	1.86
10868682--10868723	11	3.8	11	93	0	75	50	28	0	21	1.49
10868682--10868724	22	2.0	22	100	0	86	48	27	0	23	1.51
10874830--10874867	21	1.9	21	89	10	62	39	2	0	57	1.12
10876843--10876873	15	2.0	16	93	6	55	0	12	9	77	0.99
10898328--10898487	81	2.0	78	89	3	239	29	21	16	31	1.96
10911396--10911455	29	2.1	29	90	0	93	56	18	1	23	1.50
10917793--10917835	14	3.1	14	77	9	52	37	2	0	60	1.10
10919277--10919318	21	2.0	21	81	9	50	47	0	0	52	1.00
10922821--10922860	17	2.2	17	86	8	53	52	0	0	47	1.00
10924155--10924201	21	2.2	21	81	7	51	21	2	8	68	1.27
10925125--10925160	19	2.0	18	89	10	56	22	0	5	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10927308--10927354	21	2.2	21	81	7	51	21	2	8	68	1.27
10928278--10928313	19	2.0	18	89	10	56	22	0	5	72	1.05
10933856--10933895	17	2.2	17	86	8	53	52	0	0	47	1.00
10933964--10934001	15	2.4	16	91	4	60	36	2	2	57	1.26
10940595--10940643	18	2.6	19	80	9	55	22	0	6	71	1.08
10943084--10943123	21	1.9	21	89	0	62	42	5	2	50	1.37
10943444--10943663	104	2.1	103	84	3	289	47	8	22	20	1.77
10943703--10944078	107	3.5	105	83	2	439	44	14	19	21	1.86
10944164--10944351	34	5.4	34	71	9	114	48	11	18	21	1.78
10957105--10957145	18	2.3	18	87	8	57	26	0	0	73	0.84
10957108--10957139	16	1.9	17	93	6	57	21	0	0	78	0.76
10958418--10958457	21	1.9	21	89	0	62	42	5	2	50	1.37
10959081--10959308	116	2.0	115	86	2	323	35	11	8	44	1.71
10959083--10959316	59	4.0	59	82	8	262	34	11	8	45	1.70
10959346--10959399	17	3.2	17	73	17	58	74	3	9	12	1.20
10959422--10959464	22	1.9	23	90	4	70	81	2	2	13	0.89
10959801--10959842	20	2.1	20	95	0	75	28	16	28	26	1.97
10959944--10959968	13	1.9	13	100	0	50	16	24	24	36	1.94
10959976--10960029	25	2.2	25	86	6	74	37	18	3	40	1.69
10960434--10960491	3	18.7	3	86	13	82	65	0	1	32	1.03
10960434--10960491	23	2.6	23	91	8	93	65	0	1	32	1.03
10960435--10960504	6	10.1	7	83	16	60	61	2	1	34	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10961056--10961103	23	2.1	23	88	0	69	22	2	4	70	1.15
10961075--10961124	25	2.0	25	88	0	73	24	2	0	74	0.93
10961255--10961296	21	2.0	21	90	0	66	19	2	7	71	1.20
10961446--10961484	19	2.1	19	95	4	71	17	5	0	76	0.96
10961656--10961694	17	2.3	17	86	8	53	20	5	0	74	1.01
10961763--10961817	26	2.2	26	87	6	78	74	14	0	10	1.07
10962422--10962464	20	2.2	20	91	4	70	16	2	11	69	1.28
10963059--10963175	40	2.9	40	79	0	144	44	19	10	25	1.82
10963448--10963542	40	2.4	40	85	3	129	48	12	8	30	1.71
10964164--10964244	40	2.0	40	90	4	128	45	8	14	30	1.75
10968748--10969043	147	2.0	150	91	2	490	24	23	15	36	1.93
10969053--10969350	150	2.0	151	93	0	508	27	24	15	31	1.96
10969310--10969419	27	4.1	27	90	0	157	25	20	19	34	1.96
10977620--10977650	15	2.0	16	93	6	55	0	12	9	77	0.99
10989034--10989068	18	1.9	18	94	0	61	54	11	14	20	1.70
10997437--10997474	17	2.2	17	86	9	51	63	0	0	36	0.95
11000836--11001033	99	2.0	98	93	1	333	38	10	20	30	1.85
11003096--11003160	25	2.6	27	80	9	66	49	0	0	50	1.00
11003335--11003366	17	1.9	16	93	6	55	71	0	0	28	0.86
11004111--11004298	21	8.8	21	72	16	109	51	0	1	47	1.07
11004150--11004408	15	16.6	15	64	22	83	52	0	0	46	1.06
11004152--11004323	23	7.5	23	74	17	101	50	0	0	49	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11004117--11004292	61	3.0	60	76	15	167	51	0	1	47	1.08
11004171--11004272	52	2.0	52	83	11	129	50	0	0	48	1.07
11004232--11004316	13	6.8	13	68	17	54	54	0	0	45	1.00
11004164--11004412	107	2.2	107	79	13	240	52	0	0	46	1.06
11004322--11004363	20	2.2	18	84	16	50	52	0	2	45	1.13
11004332--11004417	33	2.6	33	92	1	138	56	0	1	41	1.06
11004239--11004442	107	1.9	107	83	9	261	52	0	0	46	1.07
11007463--11007502	21	1.9	21	89	0	62	35	2	2	60	1.24
11010880--11010910	16	1.9	16	93	0	53	25	3	29	41	1.71
11010911--11011107	16	12.9	15	72	17	102	20	0	30	48	1.54
11010922--11011019	14	6.7	14	75	11	72	15	0	33	51	1.44
11010946--11011106	15	10.5	15	73	9	110	21	0	31	46	1.56
11012482--11012534	22	2.5	22	81	9	65	13	1	7	77	1.06
11012502--11012535	14	2.6	13	90	9	52	14	0	8	76	1.01
11012504--11012543	15	2.9	14	85	7	55	12	0	10	77	0.99
11012681--11012926	88	2.9	87	77	11	254	44	17	17	20	1.87
11012880--11013020	70	2.0	70	91	0	228	39	17	21	21	1.92
11012996--11013039	22	2.0	23	86	4	63	27	22	27	22	1.99
11012945--11013258	110	2.9	109	83	2	416	37	17	21	22	1.94
11013215--11013304	23	4.0	23	78	7	94	30	22	24	23	1.99
11013365--11013452	45	2.0	44	84	2	113	32	18	21	27	1.96
11013365--11013452	22	4.0	22	86	1	113	32	18	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11013517--11013560	22	2.0	22	95	0	79	31	15	22	29	1.95
11013957--11013989	17	1.9	17	93	0	57	24	0	6	69	1.10
11014507--11015044	33	16.5	33	85	4	621	34	15	20	29	1.93
11014507--11015044	98	5.5	98	84	4	601	34	15	20	29	1.93
11014474--11015044	131	4.4	131	85	4	692	34	15	19	30	1.93
11016980--11017008	13	2.3	13	94	5	51	0	6	3	89	0.57
11021847--11021888	21	2.0	21	86	9	59	69	2	0	28	1.01
11023097--11023185	44	2.0	46	82	12	114	15	0	33	50	1.45
11023112--11023272	16	10.5	15	73	16	125	20	0	31	47	1.55
11023112--11023272	32	5.2	30	79	10	166	20	0	31	47	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100