genome.fa.s113.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  72  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16042371--16042423	26	2.0	26	85	7	72	26	26	18	28	1.98
16042583--16042658	26	2.9	26	90	0	125	28	30	17	23	1.97
16042803--16042855	26	2.0	26	96	0	97	26	28	20	24	1.99
16043146--16043198	26	2.0	26	96	0	97	28	22	20	28	1.99
16043342--16043394	26	2.0	26	92	7	90	26	26	20	26	1.99
16043726--16043776	26	2.0	26	88	0	75	29	23	17	29	1.97
16044066--16044118	26	2.0	26	89	7	81	28	24	18	28	1.98
16044809--16045144	158	2.1	158	81	2	379	22	25	27	23	2.00
16045129--16045181	26	2.0	26	85	0	70	26	22	18	32	1.97
16045308--16045670	159	2.3	159	77	4	331	20	24	28	25	1.99
16045644--16045696	26	2.0	26	89	7	81	26	22	20	30	1.98
16045536--16045913	196	1.9	197	86	0	542	21	26	28	23	1.99
16046960--16047012	26	2.0	26	89	7	81	26	22	20	30	1.98
16047160--16047212	26	2.0	26	85	7	72	32	28	15	24	1.95
16047503--16047553	26	2.0	26	84	0	66	25	25	17	31	1.97
16047137--16047777	343	1.9	342	79	3	707	22	26	27	23	1.99
16048148--16048198	26	2.0	26	88	7	77	29	13	27	29	1.94
16049883--16049935	26	2.0	26	85	7	72	24	22	26	26	2.00
16050039--16050089	26	2.0	26	88	0	75	25	15	27	31	1.96
16051463--16051503	21	2.0	21	95	0	73	2	39	24	34	1.69
16051695--16051746	26	2.0	26	92	7	88	26	19	23	30	1.98
16051862--16052353	158	3.1	158	83	2	576	23	32	25	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16054300--16054725	159	2.7	159	82	2	500	24	30	27	18	1.98
16054931--16055452	158	3.3	158	76	10	367	22	29	27	21	1.99
16055426--16055479	26	2.1	26	89	6	83	25	18	25	29	1.98
16055611--16055663	26	2.0	26	92	7	90	28	20	24	26	1.99
16056111--16056163	26	2.0	26	88	0	79	26	18	26	28	1.98
16056861--16056913	26	2.0	26	89	7	81	30	20	22	26	1.98
16058093--16058145	26	2.0	26	92	7	90	28	16	24	30	1.97
16058118--16058405	158	1.8	158	80	3	346	26	29	25	19	1.98
16058435--16058487	26	2.0	26	92	0	88	24	18	30	26	1.98
16058649--16058701	26	2.0	26	89	7	81	28	18	24	28	1.98
16059151--16059206	26	2.2	26	93	6	96	28	19	23	28	1.98
16059361--16059413	26	2.0	26	89	7	81	28	18	26	26	1.98
16058191--16059964	712	2.5	710	79	4	1872	24	27	26	21	1.99
16059863--16059915	26	2.0	26	85	0	70	24	15	28	32	1.95
16060903--16060955	26	2.0	26	85	0	70	26	18	24	30	1.98
16062769--16062821	26	2.0	26	89	7	81	28	18	24	28	1.98
16062794--16063187	159	2.5	158	79	4	418	23	29	28	18	1.98
16062974--16063259	159	1.8	158	79	2	340	24	30	26	18	1.97
16061905--16063334	696	2.1	696	83	2	1771	24	28	25	20	1.99
16063433--16063460	11	2.5	11	100	0	56	21	50	14	14	1.78
16063765--16063817	26	2.0	26	89	7	81	26	18	26	28	1.98
16063965--16064017	26	2.0	26	85	7	72	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16064915--16064967	26	2.0	26	88	0	79	26	16	28	28	1.97
16065310--16065360	26	2.0	26	96	0	93	25	15	29	29	1.96
16065703--16065753	26	2.0	26	92	0	84	31	15	27	25	1.96
16065909--16065958	26	1.9	26	92	8	84	34	20	20	26	1.96
16064907--16066197	392	3.3	392	80	3	1305	25	26	26	21	2.00
16065877--16066371	185	2.7	185	82	1	555	25	26	24	23	2.00
16066496--16066855	160	2.3	159	82	2	445	26	29	23	20	1.99
16067608--16067659	26	2.0	26	92	0	86	25	17	28	28	1.97
16068314--16068364	26	2.0	26	88	7	77	29	13	25	31	1.94
16068654--16068706	26	2.0	26	89	7	81	28	20	24	26	1.99
16068509--16068863	183	1.9	182	80	5	403	23	28	24	22	1.99
16068837--16069124	158	1.8	158	79	5	341	23	29	27	19	1.98
16069875--16069927	26	2.0	26	85	7	72	28	18	22	30	1.98
16069906--16070331	159	2.7	159	79	5	439	23	29	28	19	1.98
16070376--16070428	26	2.0	26	96	0	97	24	13	28	33	1.93
16071099--16071151	26	2.0	26	96	0	97	32	20	22	24	1.98
16071441--16071493	26	2.0	26	85	0	70	26	16	28	28	1.97
16072129--16072181	26	2.0	26	92	0	88	26	20	26	26	1.99
16072496--16072548	26	2.0	26	89	7	81	30	22	22	24	1.99
16072997--16073049	26	2.0	26	89	7	81	28	20	24	26	1.99
16074035--16074060	12	2.2	12	100	0	52	26	23	26	23	2.00
16078714--16078766	26	2.0	26	82	7	63	32	18	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16079018--16079046	12	2.4	12	100	0	58	6	44	24	24	1.77
16079984--16080476	158	3.1	158	79	3	515	23	28	27	20	1.99
16080450--16080502	26	2.0	26	88	0	79	24	16	28	30	1.97
16081102--16081154	26	2.0	26	96	0	97	24	20	28	26	1.99
16081860--16082352	158	3.1	158	78	4	452	22	28	27	20	1.99
16082326--16082378	26	2.0	26	92	0	88	24	18	28	28	1.98
16082009--16083270	524	2.4	521	78	6	1330	23	28	27	20	1.99
16083533--16083583	26	2.0	26	88	7	77	27	17	25	29	1.98
16083236--16083953	343	2.1	341	83	3	899	23	28	27	19	1.99
16083876--16083927	26	2.0	25	88	3	77	26	19	21	32	1.97
16084619--16085033	159	2.6	159	85	2	566	22	29	30	17	1.97
16085094--16085146	26	2.0	26	85	0	70	26	16	24	32	1.97
16085842--16086265	159	2.7	159	79	5	464	22	28	30	18	1.97
16086319--16086371	26	2.0	26	88	0	79	26	18	26	28	1.98
16086001--16086817	354	2.4	343	79	6	842	22	29	28	19	1.98
16087891--16087943	26	2.0	26	88	0	79	30	18	26	24	1.98
16087917--16088472	159	3.5	159	73	5	478	25	28	26	20	1.99
16088736--16088788	26	2.0	26	89	7	81	30	20	22	26	1.98
16090613--16090665	26	2.0	26	89	7	81	26	28	20	24	1.99
16090700--16091132	184	2.3	181	78	6	458	21	27	27	22	1.99
16091532--16091584	26	2.0	26	92	0	88	30	22	16	30	1.96
16092595--16092646	26	2.0	26	96	0	95	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16092621--16093121	159	3.2	158	74	7	361	20	26	29	23	1.99
16093666--16094031	194	1.9	195	83	2	486	22	28	27	21	1.99
16093971--16094023	26	2.0	26	88	0	79	28	30	18	22	1.98
16092557--16094331	681	2.6	675	79	6	1911	20	26	28	23	1.99
16095037--16095089	26	2.0	26	92	0	88	28	28	18	24	1.98
16096612--16096664	26	2.0	26	86	13	74	30	24	16	28	1.97
16096690--16096715	12	2.2	12	100	0	52	34	23	34	7	1.83
16097144--16097210	26	2.6	26	90	0	98	26	22	19	31	1.98
16097847--16097899	26	2.0	26	92	0	88	26	26	20	26	1.99
16099229--16099280	25	2.0	26	88	3	79	32	26	17	23	1.96
16099327--16099915	159	3.7	161	76	5	513	19	25	30	23	1.98
16099887--16099939	26	2.0	26	85	7	72	28	20	20	30	1.98
16100084--16100134	26	2.0	26	84	7	68	29	27	15	27	1.96
16100426--16100478	26	2.0	26	89	7	81	26	22	20	30	1.98
16101174--16102151	159	6.2	160	75	7	584	20	26	28	23	1.99
16101174--16101995	158	5.2	158	76	5	496	20	26	28	23	1.99
16102125--16102177	26	2.0	26	85	7	72	28	26	18	26	1.98
16102585--16102616	11	2.6	13	85	14	50	53	9	0	37	1.34
16103199--16103568	184	2.0	184	81	3	431	24	26	25	24	2.00
16103999--16104051	26	2.0	26	92	7	90	26	20	26	26	1.99
16104209--16104260	26	2.0	25	85	10	70	30	19	21	28	1.97
16104213--16105498	696	1.8	696	80	3	1552	25	27	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16105405--16105457	26	2.0	26	88	0	79	26	18	26	28	1.98
16105797--16105852	26	2.2	26	90	0	85	25	16	26	32	1.96
16106428--16106460	11	3.0	11	90	0	57	12	27	33	27	1.92
16106530--16106582	26	2.0	26	85	7	72	30	16	24	28	1.97
16107067--16107561	158	3.1	158	76	4	496	23	27	27	21	1.99
16109296--16109348	26	2.0	26	88	0	79	24	18	26	30	1.98
16109138--16109652	196	2.7	187	78	7	527	23	29	26	20	1.99
16109492--16109544	26	2.0	26	89	7	81	30	16	26	26	1.97
16109516--16109777	134	1.9	135	79	5	289	24	29	27	18	1.98
16109969--16110021	26	2.0	26	88	0	79	26	20	24	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100