genome.fa.s113.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  41  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640107--10640222	57	2.0	57	98	0	223	32	16	14	36	1.89
10641731--10641775	18	2.6	17	82	6	54	24	2	13	60	1.45
10641731--10641775	17	2.6	18	82	13	58	24	2	13	60	1.45
10641941--10641981	5	8.6	5	78	10	50	78	0	2	19	0.87
10641941--10641981	19	2.2	19	91	8	66	78	0	2	19	0.87
10642809--10642840	9	3.6	9	91	0	55	43	0	21	34	1.53
10642861--10642902	3	14.0	3	100	0	84	66	0	0	33	0.92
10643514--10643672	86	1.8	86	82	2	203	38	13	18	29	1.89
10644645--10644681	16	2.4	15	86	8	56	0	2	5	91	0.48
10644674--10644737	28	2.3	28	91	0	101	1	18	4	75	1.06
10644701--10644734	17	1.9	17	88	5	50	0	17	5	76	0.98
10645024--10645133	52	2.1	51	81	6	123	17	18	10	53	1.72
10650041--10650113	17	4.2	18	74	19	57	34	1	5	58	1.29
10650056--10650114	19	3.2	18	78	9	66	32	0	5	62	1.17
10650793--10650826	15	2.2	16	89	5	52	44	26	8	20	1.81
10651139--10651283	3	48.0	3	84	6	168	60	4	2	32	1.30
10651142--10651299	12	14.2	11	77	14	55	58	5	2	33	1.33
10655250--10655433	92	2.0	92	94	2	325	21	16	7	53	1.68
10656170--10656211	9	4.6	9	88	5	66	2	11	0	85	0.68
10656170--10656210	19	2.3	19	91	8	68	2	12	0	85	0.70
10664928--10664973	5	9.2	5	90	0	74	60	0	39	0	0.97
10674050--10674081	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10682100--10682163	30	2.1	30	100	0	128	20	6	18	54	1.65
10685023--10685070	23	2.1	22	84	7	60	31	10	0	58	1.32
10687455--10687524	27	2.4	30	72	13	74	38	5	0	55	1.24
10687462--10687535	29	2.6	28	81	6	78	40	5	0	54	1.24
10687517--10687574	27	2.1	28	90	3	91	31	0	6	62	1.22
10687535--10687627	19	5.2	18	70	14	68	37	0	6	55	1.25
10689369--10689420	16	3.3	16	72	2	52	34	0	0	65	0.93
10690962--10690998	2	18.5	2	94	0	65	45	0	0	54	1.00
10694291--10694317	6	4.5	6	100	0	54	0	33	14	51	1.43
10695291--10695324	18	1.9	18	94	5	61	38	29	2	29	1.72
10700725--10701034	154	2.0	154	98	0	593	32	19	16	30	1.94
10700879--10701265	189	2.0	189	95	1	695	36	17	17	28	1.93
10702529--10702569	16	2.7	15	85	7	55	63	0	0	36	0.95
10706357--10706413	22	2.5	23	80	2	71	54	0	0	45	0.99
10706357--10706413	23	2.6	21	78	13	62	54	0	0	45	0.99
10716854--10716927	27	2.6	27	75	12	69	48	5	2	43	1.40
10718011--10718056	19	2.6	19	80	19	64	56	0	0	43	0.99
10717997--10718069	29	2.5	29	86	8	112	56	0	0	43	0.99
10718630--10718686	30	1.9	30	85	0	78	52	1	0	45	1.11
10725533--10725576	15	3.0	14	83	6	52	56	0	4	38	1.20
10725534--10725593	29	2.0	29	81	15	70	53	0	5	41	1.23
10732966--10733021	25	2.2	25	87	0	76	46	16	7	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10743406--10743436	16	1.9	16	93	0	53	35	6	58	0	1.24
10745539--10745577	18	2.3	18	86	8	55	46	2	0	51	1.14
10745565--10745660	43	2.3	42	80	7	104	43	7	6	42	1.57
10745516--10745764	117	2.1	117	81	4	288	39	8	8	43	1.64
10745757--10745892	59	2.4	59	81	9	140	31	6	11	50	1.63
10745911--10745994	4	20.8	4	70	20	50	71	5	3	19	1.22
10745953--10745996	23	2.0	22	86	4	61	72	9	0	18	1.10
10751255--10751300	24	1.9	24	86	8	67	23	26	10	39	1.88
10752059--10752092	15	2.4	14	90	5	50	32	5	20	41	1.76
10754852--10754884	6	5.8	6	86	13	52	84	0	0	15	0.61
10754852--10754886	16	2.1	17	94	5	63	82	0	0	17	0.66
10755114--10755168	26	2.2	24	83	6	65	45	3	5	45	1.44
10754904--10755405	189	2.6	188	86	3	686	46	7	7	38	1.62
10755435--10755582	52	2.8	51	73	10	127	57	11	7	23	1.59
10755450--10755559	51	2.2	51	82	9	127	58	10	6	25	1.54
10756593--10756678	43	2.0	43	95	0	154	38	4	25	31	1.76
10759678--10759713	15	2.4	15	95	0	63	88	0	8	2	0.59
10759678--10759716	14	2.8	14	88	0	60	87	0	10	2	0.65
10761020--10761060	21	2.0	21	85	0	55	36	7	14	41	1.74
10761420--10761670	41	6.1	41	81	5	274	23	13	17	45	1.84
10761427--10761660	82	2.9	81	82	6	303	22	13	17	47	1.82
10762668--10762724	26	2.2	26	81	12	64	8	1	8	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10762751--10763098	188	1.9	187	82	4	443	46	6	9	37	1.62
10773904--10773939	17	2.1	18	89	5	56	36	0	0	63	0.94
10775249--10775283	8	4.4	8	85	0	52	42	0	0	57	0.99
10775345--10775412	21	3.2	22	73	10	61	63	1	0	35	1.04
10777804--10777841	2	20.5	2	84	15	55	47	0	0	52	1.00
10778067--10778743	239	2.9	234	83	8	792	41	9	4	44	1.58
10780921--10780960	16	2.4	16	87	8	53	65	0	0	35	0.93
10780928--10780963	16	2.3	15	95	4	63	63	0	0	36	0.94
10781236--10781290	27	2.0	27	89	6	85	47	1	1	49	1.23
10783092--10783138	15	3.1	15	87	3	58	53	2	0	44	1.12
10800168--10800282	57	2.0	57	91	3	187	34	17	19	28	1.94
10802267--10802324	29	2.0	29	90	6	91	55	24	1	18	1.52
10803100--10803146	19	2.5	19	100	0	94	38	27	6	27	1.81
10805613--10805649	14	2.7	13	88	12	56	32	0	0	67	0.91
10806138--10806208	31	2.3	31	85	4	90	26	25	21	26	1.99
10806378--10806416	18	2.2	18	95	0	69	38	7	41	12	1.72
10808289--10808566	62	4.5	62	84	9	347	44	7	13	33	1.73
10808285--10808566	126	2.3	119	86	8	372	45	7	13	33	1.72
10811122--10811267	76	1.9	76	83	2	186	42	7	5	44	1.56
10811678--10811712	19	1.9	18	88	11	54	54	2	0	42	1.15
10812261--10812285	12	2.1	12	100	0	50	0	8	0	92	0.40
10813743--10813780	21	1.9	21	89	10	62	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10815372--10815431	29	2.1	29	90	6	95	55	23	0	21	1.44
10818204--10819407	608	2.0	608	93	1	2040	34	17	17	29	1.93
10822486--10822522	11	3.3	11	92	3	56	40	0	0	59	0.97
10828288--10828341	26	2.1	26	86	6	74	48	0	0	51	1.00
10828533--10828575	14	3.1	14	77	9	52	37	2	0	60	1.10
10830697--10830753	15	3.9	15	73	17	57	64	0	1	33	1.04
10830697--10830755	14	3.9	14	75	14	55	64	0	1	33	1.04
10834007--10834192	80	2.3	79	94	0	318	23	33	25	18	1.97
10833892--10834389	198	2.5	198	95	1	876	23	33	24	18	1.97
10834087--10834310	118	1.9	118	95	3	407	22	34	24	18	1.96
10834205--10834414	79	2.6	79	93	3	368	21	35	24	18	1.95
10834389--10834439	25	2.0	25	96	0	93	17	45	21	15	1.86
10835223--10835264	21	2.0	21	81	9	50	47	0	0	52	1.00
10836492--10836518	2	13.5	2	100	0	54	48	0	0	51	1.00
10838773--10838813	17	2.3	18	87	8	57	53	0	0	46	1.00
10841064--10841095	11	3.0	11	95	4	57	25	0	0	75	0.81
10841244--10841275	15	2.1	15	94	0	55	59	6	21	12	1.55
10841446--10841489	3	14.7	3	95	0	79	31	2	0	65	1.05
10842564--10842598	17	2.1	17	89	10	54	71	0	0	28	0.86
10847696--10847742	24	1.9	25	86	4	69	76	2	6	14	1.08
10847999--10848065	31	2.2	31	88	0	98	46	19	2	31	1.65
10848524--10848574	25	2.0	25	84	0	66	76	1	13	7	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10848524--10848580	16	3.5	16	78	4	51	73	1	14	10	1.17
10848573--10848629	3	19.0	3	96	0	105	64	0	1	33	1.04
10848820--10848914	31	2.9	32	75	16	79	52	14	17	14	1.75
10848834--10849324	119	4.1	119	78	4	488	43	14	21	20	1.87
10848867--10849317	238	1.9	238	82	1	573	43	14	21	20	1.87
10849245--10849380	56	2.4	56	83	2	166	41	15	21	21	1.89
10850123--10850169	17	2.5	19	77	22	55	2	25	0	72	0.96
10850154--10850259	20	5.3	19	73	18	67	0	12	4	82	0.88
10850125--10850271	27	5.4	27	75	10	106	2	17	3	76	1.03
10850136--10850259	6	20.2	6	73	19	64	1	14	4	79	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100