genome.fa.s113.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  40  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10430882--10430933	26	2.2	23	80	16	61	59	0	3	36	1.16
10430876--10430951	18	4.4	18	76	18	63	55	0	5	39	1.23
10431056--10431128	29	2.5	29	84	0	83	54	10	8	26	1.63
10432734--10432796	26	2.5	26	84	5	85	50	0	3	46	1.17
10432766--10432845	16	4.9	17	76	14	71	50	0	0	50	1.00
10432786--10432839	17	3.2	17	78	17	58	55	0	0	44	0.99
10432937--10432978	17	2.4	17	88	4	57	40	0	2	57	1.12
10432912--10432981	22	3.2	22	76	13	72	41	0	1	57	1.08
10433098--10433131	17	1.9	18	88	5	52	35	2	2	58	1.28
10435904--10435937	17	2.0	17	94	0	59	29	8	23	38	1.85
10438468--10438497	16	1.9	16	93	6	53	13	0	40	46	1.43
10440713--10440742	15	1.9	16	93	6	53	33	0	0	66	0.92
10443008--10443075	7	9.4	7	75	13	59	2	13	4	79	1.00
10443008--10443075	16	4.6	15	72	15	61	2	13	4	79	1.00
10446088--10446319	119	1.9	119	81	1	277	21	27	13	38	1.90
10446969--10447035	35	1.9	35	87	6	100	35	17	13	32	1.89
10446927--10447236	86	3.6	86	87	0	422	33	17	12	37	1.87
10447152--10447212	17	3.6	17	70	14	54	36	16	11	36	1.85
10447135--10447215	35	2.4	34	76	15	85	33	17	13	35	1.89
10447372--10447509	64	2.1	65	84	4	172	18	22	12	46	1.82
10448332--10448357	11	2.4	11	100	0	52	7	0	0	92	0.39
10448333--10448413	7	11.6	7	72	23	55	20	1	1	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10448359--10448397	20	1.9	21	89	5	62	25	2	2	69	1.14
10448336--10448406	13	5.5	13	75	21	53	21	1	1	76	0.95
10458540--10458582	13	3.5	13	78	9	54	65	0	0	34	0.93
10458532--10458597	22	2.8	24	82	13	84	66	0	0	33	0.92
10458532--10458600	28	2.6	27	77	20	81	66	0	0	33	0.92
10460787--10460842	29	2.0	28	85	3	76	60	3	5	30	1.36
10468655--10468693	2	19.5	2	83	0	51	48	2	0	48	1.15
10477835--10477873	17	2.4	17	87	8	55	23	2	12	61	1.43
10479019--10479067	23	2.1	23	81	7	55	40	0	2	57	1.10
10480030--10480058	2	14.5	2	100	0	58	51	0	0	48	1.00
10483105--10483180	39	1.9	39	100	0	152	28	10	26	34	1.90
10494145--10494172	2	14.0	2	100	0	56	50	50	0	0	1.00
10494172--10494215	2	22.0	2	100	0	88	50	0	0	50	1.00
10494636--10494664	10	2.7	11	89	10	51	44	0	0	55	0.99
10496954--10496996	11	3.9	11	87	0	50	20	13	13	51	1.76
10504317--10504351	11	3.2	11	91	0	52	25	14	8	51	1.70
10511164--10511223	3	20.3	3	96	3	113	31	0	0	68	0.90
10511290--10511346	27	2.1	27	96	0	105	33	14	3	49	1.60
10515193--10515258	12	5.5	11	78	16	51	19	1	0	78	0.82
10515177--10515258	25	3.3	23	76	19	67	20	2	1	75	0.98
10515177--10515233	12	4.7	12	79	16	64	21	3	1	73	1.07
10515214--10515266	18	2.9	18	81	13	65	22	1	0	75	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10515216--10515269	26	2.0	27	82	3	65	27	1	0	70	0.98
10516250--10516293	23	1.9	23	90	0	70	61	6	6	25	1.46
10516786--10516811	2	13.0	2	100	0	52	50	0	0	50	1.00
10521127--10521166	15	2.7	15	88	7	55	35	0	2	62	1.09
10527344--10527430	43	2.0	46	82	11	110	47	5	0	47	1.26
10527463--10527533	32	2.2	32	85	2	90	50	5	0	43	1.25
10534716--10534828	46	2.5	44	74	16	104	27	6	6	60	1.45
10534919--10534970	25	2.1	25	85	7	70	44	9	3	42	1.55
10535723--10535769	15	3.1	16	78	12	53	0	40	0	59	0.97
10535906--10535964	31	1.9	31	85	0	82	52	11	6	28	1.63
10536390--10536455	28	2.2	28	78	7	69	74	9	0	16	1.06
10536431--10536484	23	2.3	25	79	20	64	74	0	3	22	0.98
10540459--10540500	17	2.4	17	80	19	50	54	4	0	40	1.21
10540458--10540514	29	2.0	29	85	0	78	52	5	0	42	1.24
10541743--10541800	25	2.4	24	73	18	57	46	0	0	53	1.00
10545256--10545300	3	15.0	3	100	0	90	66	0	0	33	0.92
10546286--10546338	18	3.1	18	75	20	60	37	5	5	50	1.50
10547671--10547713	22	2.0	22	90	9	70	67	0	0	32	0.91
10547654--10547713	21	2.7	23	82	12	72	66	0	0	33	0.92
10561045--10561084	2	20.0	2	94	0	71	50	2	0	47	1.14
10561128--10561187	24	2.5	25	81	5	70	56	0	0	43	0.99
10563221--10563432	22	9.6	21	76	6	82	35	6	10	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10563239--10563388	66	2.3	66	76	2	149	35	5	11	48	1.62
10563272--10563436	22	7.5	22	78	7	113	36	6	11	45	1.67
10563563--10563636	22	3.4	22	77	7	53	35	10	8	45	1.69
10563878--10563923	22	2.1	21	88	4	65	32	17	4	45	1.68
10563929--10564075	22	6.7	22	75	6	82	39	4	8	46	1.56
10563941--10564075	44	3.1	42	77	8	126	39	5	8	47	1.56
10564112--10564145	11	3.1	11	84	16	52	55	11	0	32	1.36
10564158--10564332	22	8.0	22	65	14	67	30	10	12	46	1.74
10564126--10564219	44	2.1	44	82	0	107	35	9	7	47	1.64
10564386--10564449	22	2.9	22	85	0	65	39	12	3	45	1.58
10564461--10564519	22	2.7	22	81	0	64	33	8	6	50	1.59
10564506--10564743	22	10.6	22	69	14	103	36	7	4	51	1.51
10565067--10565392	22	15.2	22	70	16	141	33	7	6	52	1.55
10565250--10565361	11	9.8	11	68	15	50	32	5	4	58	1.41
10565322--10565403	22	3.7	22	80	8	78	34	7	7	51	1.58
10565385--10565419	16	2.2	16	100	0	70	37	0	17	45	1.48
10567749--10569163	356	4.0	356	94	0	2442	43	5	8	42	1.58
10570603--10570634	2	16.0	2	93	0	55	46	0	3	50	1.17
10576132--10576158	14	1.9	14	100	0	54	14	0	3	81	0.82
10576823--10576868	17	2.6	17	89	3	65	2	21	0	76	0.90
10577003--10577045	19	2.3	18	80	4	50	6	23	0	69	1.12
10578127--10578168	20	2.1	20	100	0	84	23	21	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10581245--10581298	21	2.5	21	81	3	63	64	0	3	31	1.11
10581245--10581295	24	2.2	22	82	6	57	64	0	3	31	1.11
10582421--10584412	232	8.6	230	72	11	809	50	5	10	32	1.61
10583164--10583211	21	2.3	20	79	10	51	56	0	6	37	1.25
10590390--10590414	12	2.1	12	100	0	50	0	16	0	84	0.63
10594196--10594222	12	2.2	12	100	0	54	51	37	0	11	1.37
10601185--10601333	81	1.8	81	86	2	219	32	28	6	33	1.81
10603151--10603217	27	2.6	26	80	17	77	32	7	1	58	1.35
10603266--10603339	29	2.5	29	89	8	114	44	2	9	43	1.51
10604196--10604220	12	2.1	12	100	0	50	40	0	0	60	0.97
10604931--10605008	23	3.5	22	82	6	84	33	0	1	65	1.01
10604931--10605014	20	3.9	21	77	18	75	33	0	2	64	1.07
10615433--10615656	73	3.0	73	77	5	189	33	8	2	55	1.43
10617333--10617398	30	2.2	30	89	5	98	63	1	3	31	1.19
10617333--10617410	30	2.4	29	80	16	84	62	1	2	33	1.17
10617428--10617469	11	3.7	12	81	9	52	30	0	0	69	0.89
10620190--10620239	24	2.0	25	85	11	68	54	8	22	16	1.68
10622066--10622210	10	14.6	10	72	16	81	64	6	1	28	1.26
10622131--10622169	17	2.3	17	86	8	53	69	0	2	28	1.02
10622139--10622228	10	9.4	9	75	15	58	64	3	1	31	1.17
10622156--10622199	21	2.1	21	83	8	54	68	4	0	27	1.09
10627014--10627077	30	2.2	29	86	5	94	60	1	0	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10627083--10627124	17	2.5	17	92	0	66	23	14	7	54	1.64
10631668--10631728	33	1.9	31	87	9	88	22	11	29	36	1.90
10634654--10634690	16	2.4	16	90	4	58	32	0	10	56	1.34
10637055--10637111	27	2.1	28	87	9	82	5	5	22	66	1.32
10637077--10637124	13	3.6	13	77	5	51	2	4	25	68	1.18
10638043--10638076	6	5.7	6	92	0	59	82	0	2	14	0.79
10638757--10638911	82	1.9	82	85	5	215	39	12	9	38	1.77
10638984--10639079	23	4.3	23	73	5	79	32	19	18	29	1.96
10638991--10639054	22	3.0	21	75	6	74	31	20	18	29	1.96
10639035--10639112	23	3.4	23	76	3	68	34	20	19	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100