genome.fa.s113.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  90  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17987223--17987303	23	3.6	22	81	5	92	29	17	22	30	1.96
17987285--17987468	87	2.1	86	81	3	217	41	17	19	21	1.91
17987447--17987490	22	2.0	22	86	0	61	31	20	22	25	1.98
17987361--17987607	109	2.3	109	87	1	334	39	18	19	22	1.93
17987567--17987642	22	3.5	22	77	10	75	30	21	22	26	1.99
17987595--17987650	22	2.6	21	76	20	62	33	17	17	30	1.94
17987459--17987735	152	1.8	152	90	3	450	37	17	21	23	1.94
17987946--17988027	23	3.7	23	83	4	98	30	20	23	25	1.99
17988141--17988344	104	2.0	104	97	0	383	39	15	13	31	1.86
17988146--17988309	52	3.2	52	65	22	128	40	15	12	32	1.84
17988240--17988551	121	2.6	121	91	1	500	36	16	14	32	1.89
17988542--17988571	16	1.9	15	93	6	51	26	0	6	66	1.16
17989072--17989413	65	5.2	65	80	6	354	34	15	19	30	1.93
17989098--17989416	98	3.3	98	84	2	408	33	15	20	29	1.94
17989072--17989414	33	10.5	33	80	4	349	34	15	19	30	1.93
17997235--17997274	18	2.4	17	84	12	55	15	0	32	52	1.43
17998647--17998685	13	3.1	12	85	7	51	12	0	10	76	1.01
18000431--18000476	23	1.9	25	86	8	69	30	8	17	43	1.79
18001714--18001747	16	2.1	16	88	5	50	8	0	8	82	0.85
18001822--18001866	21	2.1	21	83	0	54	11	4	20	64	1.42
18003377--18003495	37	3.2	37	86	3	152	46	4	10	39	1.57
18010160--18010197	3	12.7	3	100	0	76	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18014447--18014494	3	16.0	3	100	0	96	33	0	0	66	0.92
18016099--18016161	32	2.0	32	93	0	108	49	9	11	30	1.70
18019453--18019487	16	2.2	16	100	0	70	42	11	17	28	1.83
18020329--18020424	3	32.0	3	75	12	81	31	0	5	63	1.16
18020350--18020419	25	2.8	25	81	14	81	32	0	4	62	1.14
18020460--18020554	37	2.6	37	86	6	147	20	15	26	37	1.92
18026436--18026500	32	2.0	32	90	0	103	30	12	10	46	1.76
18032188--18032223	19	1.9	18	88	5	54	63	0	2	33	1.08
18032921--18032969	16	3.1	16	88	2	73	55	14	2	28	1.51
18033002--18033050	16	3.1	16	85	2	64	59	14	0	26	1.36
18033720--18033748	2	14.5	2	100	0	58	51	0	0	48	1.00
18033748--18033780	2	16.5	2	100	0	66	51	0	48	0	1.00
18035812--18035836	11	2.3	11	100	0	50	76	0	8	16	1.02
18035843--18035885	13	3.1	14	76	10	52	81	0	2	16	0.79
18035842--18035897	19	2.8	20	75	20	64	80	0	3	16	0.85
18035818--18035893	27	2.8	25	77	18	73	76	1	5	17	1.04
18036665--18036710	22	2.1	22	87	0	65	78	0	2	19	0.86
18036675--18036717	14	3.0	14	83	13	52	72	2	0	25	0.97
18036675--18036719	16	2.9	15	83	9	54	71	2	0	26	0.98
18036678--18036799	3	42.3	3	76	16	116	62	3	2	31	1.24
18036704--18036819	15	6.8	17	76	17	84	57	6	2	33	1.37
18036693--18036819	63	2.0	63	86	10	177	58	5	2	33	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18036733--18036866	71	1.9	72	84	1	180	56	6	4	32	1.45
18037067--18037198	56	2.4	55	75	5	140	39	18	21	20	1.93
18037109--18037419	110	2.8	110	74	2	293	40	16	21	21	1.91
18043022--18043051	12	2.4	12	94	5	51	76	6	0	16	0.99
18043847--18044043	3	69.0	3	72	16	118	60	5	2	32	1.30
18043833--18043871	20	2.1	19	90	9	62	79	0	5	15	0.90
18043848--18044043	26	7.5	26	70	20	124	60	5	2	32	1.30
18043866--18043999	16	8.1	15	78	16	99	58	5	1	35	1.30
18043866--18043999	10	12.1	10	78	14	99	58	5	1	35	1.30
18043867--18044043	71	2.5	69	81	11	175	57	5	2	34	1.35
18045400--18045457	30	1.9	31	89	3	91	24	1	31	43	1.64
18051503--18051571	36	1.9	36	100	0	138	43	14	4	37	1.65
18052246--18052312	32	2.1	31	83	8	82	19	1	4	74	1.07
18052315--18052359	19	2.4	19	88	7	65	24	2	2	71	1.09
18052321--18052541	4	53.5	4	65	22	52	26	4	3	65	1.27
18052317--18052354	15	2.5	16	87	8	53	23	2	2	71	1.12
18052321--18052541	11	17.8	12	67	21	52	26	4	3	65	1.27
18052415--18052472	22	2.6	23	81	10	66	31	5	5	58	1.42
18052473--18052531	31	1.9	30	86	10	84	22	1	3	72	1.08
18053356--18053413	9	6.3	9	86	4	71	15	0	1	82	0.74
18053354--18053422	32	2.1	35	89	8	108	17	0	1	81	0.77
18053360--18053512	28	5.5	27	66	20	57	18	3	3	73	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18053360--18053427	19	3.7	18	78	9	57	20	0	1	77	0.84
18053463--18053512	9	5.3	9	84	13	57	20	6	0	74	1.03
18053542--18053951	117	3.4	119	79	12	449	42	6	12	38	1.69
18053691--18053946	57	4.4	56	80	9	246	42	6	12	37	1.70
18057048--18057104	28	2.0	28	100	0	114	35	14	14	36	1.86
18064351--18064419	8	8.6	8	82	6	68	79	0	10	10	0.93
18064359--18064409	15	3.3	15	86	5	75	76	0	11	11	1.02
18064351--18064434	39	2.1	39	89	6	125	77	0	11	10	1.00
18065461--18065490	13	2.3	13	100	0	60	36	6	26	30	1.82
18065425--18065531	54	2.0	54	100	0	214	26	14	25	33	1.95
18065475--18065653	41	4.2	41	85	5	214	25	15	22	36	1.94
18065475--18065653	87	2.1	82	82	5	214	25	15	22	36	1.94
18065706--18065815	45	2.5	44	86	2	141	19	12	25	42	1.86
18065988--18066060	33	2.3	33	80	4	87	17	2	4	75	1.08
18066160--18066212	22	2.4	23	81	9	65	30	5	5	58	1.44
18067177--18067234	4	14.0	4	78	21	50	20	3	0	75	0.94
18067180--18067235	5	11.8	5	75	21	50	19	3	0	76	0.93
18067181--18067240	19	3.2	19	81	11	79	20	5	0	75	0.99
18067106--18067235	23	5.5	23	69	25	85	20	3	3	73	1.10
18067262--18067608	58	5.8	57	73	14	270	42	6	12	38	1.68
18070547--18070623	29	2.8	27	77	15	70	62	9	2	25	1.38
18070637--18070670	9	3.7	9	88	4	50	52	8	11	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18070774--18070813	19	2.0	20	90	4	64	77	10	0	12	0.99
18070837--18070877	19	2.2	19	91	8	66	78	4	2	14	1.03
18071241--18071296	29	1.9	29	82	7	69	19	3	1	75	1.05
18071879--18071917	21	1.9	21	89	5	62	46	2	2	48	1.29
18071955--18072078	26	4.7	26	75	18	112	27	2	6	63	1.31
18072002--18072090	9	10.1	8	75	14	70	29	0	6	64	1.19
18071951--18072106	27	5.8	26	79	15	122	28	2	6	62	1.33
18074905--18074945	19	2.2	18	86	4	55	26	12	17	43	1.84
18074905--18074952	18	2.6	19	86	3	62	29	12	14	43	1.82
18075109--18075166	26	2.2	27	81	3	73	24	6	1	67	1.25
18075487--18075568	14	5.3	15	77	15	71	73	2	1	23	1.03
18076105--18076146	18	2.4	17	77	14	50	69	11	16	2	1.29
18077097--18077126	3	10.0	3	92	0	51	33	36	0	30	1.58
18086150--18087574	161	8.8	160	78	4	1114	42	15	9	32	1.80
18091633--18091671	20	1.9	19	85	10	51	51	7	15	25	1.70
18100147--18100250	40	2.7	39	85	5	131	27	9	12	50	1.71
18100187--18100280	38	2.5	37	84	3	107	30	9	12	46	1.74
18100225--18100492	116	2.3	116	81	3	290	25	13	17	43	1.85
18101305--18101332	13	2.2	13	100	0	56	50	0	0	50	1.00
18102678--18102750	32	2.2	32	83	9	85	50	15	8	26	1.71
18102658--18102750	33	2.8	32	80	8	89	45	15	9	30	1.78
18103452--18103599	75	2.0	74	82	5	181	20	5	18	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18104872--18104992	36	3.3	36	75	8	100	34	8	24	32	1.85
18104872--18104965	12	7.8	12	68	9	66	35	8	25	30	1.86
18104951--18104980	15	2.0	15	93	0	51	30	6	23	40	1.80
18104939--18104992	27	2.0	27	85	7	74	33	7	22	37	1.82
18104927--18104992	12	5.2	12	77	16	62	36	7	21	34	1.82
18108204--18108280	31	2.5	31	82	6	84	28	7	7	55	1.56
18108795--18109009	42	5.1	42	74	5	159	52	14	8	25	1.69
18109147--18109171	12	2.1	12	100	0	50	32	28	0	40	1.57
18110520--18110544	11	2.3	11	100	0	50	32	0	8	60	1.26
18111630--18111737	48	2.3	48	85	1	146	60	8	6	25	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100