genome.fa.s113.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  86  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17290910--17290934	13	1.9	13	100	0	50	56	0	0	44	0.99
17290916--17290972	23	2.5	22	78	10	62	63	1	1	33	1.15
17290916--17290969	25	2.3	24	84	9	67	66	1	1	29	1.12
17299613--17299650	20	1.9	19	85	15	51	28	10	0	60	1.30
17314179--17314214	3	12.0	3	100	0	72	66	0	0	33	0.92
17314217--17314306	3	30.0	3	93	0	153	33	3	0	63	1.11
17319350--17319393	23	1.9	23	81	9	54	54	9	9	27	1.62
17323235--17323298	32	2.0	32	90	0	101	43	17	3	35	1.65
17323176--17323356	91	2.0	91	87	3	265	37	13	5	44	1.67
17323268--17323441	60	2.9	60	86	3	215	32	8	5	52	1.56
17324306--17324513	109	1.9	110	85	6	287	29	11	7	51	1.65
17324980--17325028	25	2.0	25	88	8	73	38	6	6	48	1.53
17325111--17325153	23	2.0	21	86	9	59	81	6	0	11	0.87
17326002--17326054	22	2.4	22	83	0	70	28	3	0	67	1.07
17326280--17326324	14	3.1	14	87	9	56	6	15	0	77	0.96
17326347--17326725	42	8.9	42	82	7	374	45	20	10	23	1.82
17326369--17326730	129	2.8	126	82	5	417	45	20	10	23	1.82
17333736--17333787	25	2.1	24	82	10	61	59	7	11	21	1.56
17335208--17335240	13	2.5	13	86	13	50	75	0	18	6	1.00
17335222--17335265	23	1.9	24	86	9	65	77	2	15	4	1.04
17338445--17338498	24	2.2	24	83	6	65	40	37	5	16	1.72
17338522--17338561	21	1.9	21	90	10	64	45	40	0	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17338994--17339026	17	1.9	17	88	11	50	30	3	15	51	1.58
17339797--17339825	9	3.3	9	90	9	51	10	13	0	75	1.04
17342275--17342303	13	2.1	14	93	6	51	20	0	10	68	1.18
17347362--17347424	26	2.5	25	75	12	65	49	7	12	30	1.69
17354330--17354372	18	2.3	17	84	15	50	18	4	0	76	0.95
17355760--17355804	24	1.9	23	86	4	63	8	13	4	73	1.23
17357591--17357737	63	2.3	63	91	0	231	21	6	17	53	1.67
17359711--17359740	15	2.1	15	93	6	53	40	0	0	60	0.97
17360511--17360541	4	7.8	4	100	0	62	22	0	0	77	0.77
17364762--17364822	30	2.0	30	87	0	86	36	18	9	36	1.84
17366926--17366971	22	2.1	22	91	0	74	52	10	26	10	1.69
17382057--17382098	20	2.1	20	86	8	59	28	0	2	69	1.01
17388373--17388410	17	2.3	18	82	17	55	21	7	0	71	1.11
17388374--17388410	16	2.3	16	86	13	58	21	5	0	72	1.04
17390063--17390103	2	20.5	2	89	0	64	43	0	4	51	1.23
17390547--17390594	22	2.2	22	84	0	60	54	2	8	35	1.42
17391005--17391076	37	1.9	37	97	0	135	40	15	8	36	1.77
17415502--17415598	48	2.0	48	92	2	160	31	29	13	24	1.93
17418228--17418252	2	12.5	2	100	0	50	52	0	0	48	1.00
17421554--17421585	13	2.5	13	94	0	55	28	25	0	46	1.53
17421555--17421606	13	3.6	14	78	14	52	32	23	0	44	1.54
17424585--17424622	19	2.0	19	89	0	58	28	23	10	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17433401--17433504	30	3.9	26	69	15	61	55	0	0	44	0.99
17433403--17433461	30	2.0	30	89	0	91	52	0	0	47	1.00
17433461--17433495	11	3.1	11	95	4	61	60	0	0	40	0.97
17438838--17438949	34	3.2	34	71	7	98	28	8	19	42	1.81
17440227--17440274	5	8.8	5	82	13	51	22	2	2	72	1.05
17440831--17440878	25	1.9	25	87	8	71	72	2	4	20	1.11
17443717--17443750	9	3.6	9	85	14	50	35	0	0	64	0.94
17443718--17443767	20	2.7	20	76	17	54	42	0	0	58	0.98
17443596--17444336	249	3.0	248	81	10	850	35	7	4	52	1.50
17444132--17444548	165	2.6	158	86	6	536	34	5	5	54	1.47
17446653--17446680	13	2.2	13	100	0	56	17	0	46	35	1.49
17448283--17448342	22	2.8	20	82	12	59	73	5	6	15	1.22
17448681--17448733	20	2.5	21	77	16	56	56	1	9	32	1.42
17450578--17450686	30	3.6	30	85	6	132	22	10	32	34	1.88
17451211--17451471	134	2.0	133	85	0	351	40	13	10	35	1.80
17456421--17457293	437	2.0	435	95	0	1584	37	14	7	40	1.74
17461170--17461222	26	2.0	26	100	0	106	39	26	11	22	1.88
17466250--17466284	8	4.1	8	86	13	52	40	0	0	60	0.97
17466273--17466330	22	2.6	21	86	10	80	44	0	0	55	0.99
17471631--17471674	17	2.4	18	85	7	54	38	0	4	56	1.20
17471661--17471711	3	17.0	3	100	0	102	33	0	0	66	0.92
17471778--17471953	89	2.0	89	98	0	343	34	9	9	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17474443--17474513	31	2.3	31	90	2	117	46	5	18	29	1.72
17477226--17477267	17	2.5	17	96	0	75	38	21	7	33	1.81
17477842--17477883	19	2.1	21	82	8	52	19	0	7	73	1.05
17479587--17479619	3	11.3	3	87	6	50	69	0	0	30	0.88
17479593--17479619	14	1.9	14	100	0	54	66	0	0	33	0.92
17479733--17479780	24	1.9	26	83	8	64	52	8	16	22	1.71
17479868--17479903	16	2.2	17	90	5	56	41	5	0	52	1.24
17481638--17481848	114	1.9	110	85	9	293	37	6	8	47	1.59
17489262--17489305	22	2.0	22	90	0	70	27	22	18	31	1.97
17491510--17491539	14	2.1	14	93	0	51	40	0	23	36	1.55
17493722--17493929	109	1.9	108	85	4	285	33	9	8	48	1.67
17498205--17498275	26	2.8	26	87	4	101	49	0	1	49	1.09
17498194--17498275	9	9.4	9	72	17	57	51	1	1	46	1.16
17498239--17498361	16	7.4	16	67	15	61	48	0	1	48	1.16
17498279--17498316	20	1.9	20	84	10	51	47	2	0	50	1.15
17498348--17498388	19	2.1	20	90	4	66	31	0	0	68	0.90
17498383--17498425	18	2.3	19	80	19	54	41	0	4	53	1.21
17498381--17498424	23	2.0	22	82	13	54	40	0	4	54	1.21
17502689--17502734	24	1.9	24	86	0	65	39	13	13	34	1.83
17506563--17506611	25	2.0	25	88	8	73	55	8	16	20	1.66
17514568--17514604	15	2.3	17	86	9	51	56	0	0	43	0.99
17515602--17515640	17	2.2	18	86	4	53	25	0	5	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17516120--17516195	34	2.3	34	79	2	91	56	1	1	40	1.16
17516785--17516867	26	3.3	24	73	17	71	60	1	1	37	1.12
17516823--17516849	14	1.9	14	100	0	54	59	0	0	40	0.98
17517389--17517600	63	3.4	61	74	14	175	40	4	6	48	1.50
17517325--17517627	124	2.5	123	78	4	279	39	6	7	46	1.58
17517452--17517687	62	3.8	61	74	12	191	39	7	5	48	1.53
17517403--17517687	123	2.3	124	81	7	328	38	7	5	48	1.55
17517555--17517997	239	1.9	240	82	5	565	38	9	10	42	1.71
17518998--17519031	15	2.2	16	89	5	52	61	0	0	38	0.96
17521972--17522012	2	20.5	2	94	0	73	51	0	2	46	1.14
17523021--17523053	3	11.0	3	93	0	57	36	0	0	63	0.95
17523745--17523802	25	2.3	26	84	3	73	48	1	0	50	1.11
17524794--17524818	5	5.0	5	100	0	50	80	0	0	20	0.72
17526770--17526794	2	12.5	2	100	0	50	0	52	0	48	1.00
17532472--17532830	60	6.0	59	82	7	413	35	10	6	47	1.64
17532472--17532822	179	2.0	178	84	3	465	34	10	6	49	1.63
17532472--17532830	119	3.0	119	81	7	451	35	10	6	47	1.64
17533922--17534251	86	3.8	85	77	4	297	44	13	18	23	1.85
17534405--17534443	17	2.2	17	86	4	51	48	17	7	25	1.74
17534414--17534490	33	2.3	35	84	6	97	42	15	14	27	1.85
17534431--17534500	17	4.2	17	77	1	70	38	14	14	32	1.86
17534479--17534704	34	6.6	34	74	7	154	36	9	19	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17534476--17534558	17	4.9	16	71	14	51	37	10	19	32	1.86
17534615--17534704	17	5.3	17	73	0	81	34	6	20	38	1.78
17534479--17534704	68	3.3	68	76	2	204	36	9	19	34	1.85
17535924--17535977	14	3.6	14	80	16	56	12	20	0	66	1.24
17535923--17535983	21	2.8	22	75	20	58	11	21	0	67	1.22
17535929--17536000	38	1.9	37	83	8	92	8	20	0	70	1.12
17535981--17536013	13	2.6	13	90	4	50	0	15	3	81	0.80
17535976--17536021	21	2.2	21	84	7	58	2	17	2	78	0.96
17536385--17536426	10	4.4	10	85	8	52	4	2	9	83	0.88
17536382--17536427	15	3.3	14	82	8	58	4	2	8	84	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100