genome.fa.s113.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  21  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6157026--6157089	14	4.5	15	84	7	89	20	0	29	50	1.49
6157026--6157104	14	5.6	14	80	15	83	22	0	26	50	1.49
6157026--6157089	29	2.2	29	89	8	96	20	0	29	50	1.49
6158153--6158193	13	3.2	13	85	0	55	0	4	9	85	0.73
6158746--6158833	37	2.4	37	75	3	97	43	17	23	15	1.87
6158830--6158885	22	2.5	22	82	11	60	35	16	19	28	1.93
6158842--6158886	24	2.0	23	87	12	67	33	15	20	31	1.93
6158852--6158902	24	2.1	24	85	7	68	35	15	21	27	1.94
6159187--6159219	16	2.1	16	94	0	57	15	30	27	27	1.96
6158988--6159439	236	1.9	236	82	2	568	38	17	19	24	1.93
6159332--6159527	87	2.3	87	85	1	259	42	19	15	22	1.89
6159284--6159644	196	1.8	197	85	2	512	40	18	17	22	1.91
6159420--6159966	109	5.0	108	75	5	398	39	17	18	24	1.91
6159616--6159662	24	2.0	24	95	0	85	34	25	19	21	1.96
6159638--6159952	108	2.9	109	77	4	312	40	15	18	26	1.90
6159875--6160039	87	1.9	87	84	0	222	41	15	16	26	1.88
6159750--6160358	196	3.1	194	80	4	650	39	17	19	23	1.92
6160054--6160239	87	2.1	87	84	2	230	39	19	19	21	1.93
6160141--6160347	109	1.9	109	83	4	265	38	19	20	21	1.94
6160672--6160706	18	1.9	18	88	0	52	37	8	25	28	1.85
6162361--6162393	13	2.6	13	90	4	50	9	0	3	87	0.63
6162352--6162404	22	2.5	22	87	3	72	9	0	7	83	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6164971--6165038	22	3.1	22	78	4	75	44	4	10	41	1.58
6165078--6165131	22	2.5	22	81	0	63	46	7	9	37	1.64
6165128--6165178	22	2.3	22	82	0	57	47	5	7	39	1.57
6165139--6165190	22	2.4	22	86	0	68	44	5	9	40	1.61
6165599--6165639	21	2.0	21	85	0	55	43	7	12	36	1.70
6165717--6165761	3	14.7	3	86	4	63	35	2	0	62	1.08
6168168--6168194	14	1.9	14	100	0	54	37	14	7	40	1.74
6172098--6172127	15	2.0	15	100	0	60	40	6	33	20	1.78
6179161--6179280	30	4.1	30	76	13	106	51	0	8	40	1.32
6182860--6182925	32	2.1	32	100	0	132	53	12	12	22	1.71
6182864--6182916	16	3.3	16	69	10	54	56	9	13	20	1.64
6184858--6184901	2	22.0	2	95	0	79	47	0	0	52	1.00
6188119--6188171	27	2.0	26	85	3	70	43	3	0	52	1.19
6190023--6190087	22	2.9	22	82	17	64	53	0	0	46	1.00
6200116--6200159	21	2.0	21	86	4	61	75	13	2	9	1.14
6200265--6200387	3	42.0	3	73	13	105	31	0	3	64	1.15
6200272--6200387	19	5.9	20	73	20	84	31	0	3	64	1.16
6200266--6200387	22	5.4	22	74	14	88	31	0	3	64	1.15
6200323--6200386	5	13.2	5	78	18	55	32	1	0	65	1.02
6201162--6201242	19	4.2	19	78	9	83	18	1	3	76	1.00
6206159--6206288	31	4.0	33	69	16	92	20	26	12	40	1.88
6206163--6206288	65	1.9	65	87	3	182	20	26	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6206127--6206332	61	3.3	61	77	10	202	21	26	11	40	1.87
6206734--6206795	17	3.7	17	91	2	90	20	20	8	50	1.74
6207027--6207235	110	1.9	110	81	3	251	21	23	14	40	1.90
6207009--6207215	55	3.8	54	75	10	150	21	22	14	41	1.89
6207056--6207237	55	3.3	54	73	4	159	20	23	14	41	1.89
6208028--6208195	84	2.0	82	88	2	246	23	7	21	47	1.76
6214055--6214089	2	18.0	2	88	5	54	45	0	2	51	1.16
6214044--6214082	10	3.9	10	87	9	53	43	0	5	51	1.24
6214502--6214526	12	2.1	12	100	0	50	16	0	0	84	0.63
6214715--6214741	14	1.9	14	100	0	54	0	7	3	88	0.61
6216215--6216282	20	3.5	19	74	6	57	45	1	1	51	1.19
6216257--6216296	20	2.1	19	85	4	53	55	0	0	45	0.99
6216256--6216299	19	2.3	18	81	11	52	50	0	0	50	1.00
6218019--6218055	2	18.5	2	100	0	74	48	0	51	0	1.00
6218416--6218440	11	2.3	11	100	0	50	16	8	24	52	1.70
6223749--6223776	2	14.0	2	100	0	56	0	0	50	50	1.00
6223776--6223809	2	17.0	2	100	0	68	50	0	50	0	1.00
6235518--6235557	21	1.9	21	89	0	62	45	10	0	45	1.37
6236651--6236719	36	1.9	36	84	0	93	17	20	34	27	1.95
6240180--6240222	18	2.3	18	84	8	59	27	2	0	69	1.00
6240246--6240292	23	2.1	23	84	7	62	59	4	0	36	1.17
6241350--6241400	25	2.1	24	85	3	66	29	7	1	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6244645--6244704	26	2.4	25	82	2	75	41	20	15	23	1.89
6248357--6248399	18	2.3	18	84	8	59	27	2	0	69	1.00
6248423--6248470	23	2.2	23	85	7	64	58	4	0	37	1.18
6249850--6249885	18	2.0	18	100	0	72	27	11	16	44	1.82
6251677--6251713	12	3.1	12	88	0	56	24	0	8	67	1.17
6251676--6251713	15	2.5	15	91	0	67	23	0	10	65	1.23
6252458--6252488	16	1.9	16	93	0	53	80	3	9	6	0.99
6255312--6255445	56	2.5	53	82	10	162	42	7	4	45	1.52
6255775--6255906	56	2.3	57	80	3	151	47	6	4	40	1.50
6257097--6257232	71	1.9	71	89	3	211	56	5	19	18	1.60
6259906--6259963	3	19.3	3	100	0	116	32	0	0	67	0.91
6265505--6265547	17	2.5	17	85	11	61	4	23	0	72	1.04
6270855--6270952	36	2.7	36	74	0	97	30	16	25	27	1.96
6273748--6273794	20	2.3	21	85	10	62	4	27	0	68	1.08
6274183--6274220	18	2.2	17	86	9	51	81	0	13	5	0.85
6274393--6274418	12	2.2	12	100	0	52	61	0	0	38	0.96
6274500--6274534	10	3.4	10	88	7	52	51	0	0	48	1.00
6277407--6277443	17	2.1	18	90	5	58	24	0	2	72	0.97
6278065--6278228	84	2.0	84	92	0	274	25	9	21	43	1.82
6285328--6285423	7	13.3	7	74	13	61	23	2	1	72	1.01
6285322--6285366	12	3.8	12	83	13	58	17	0	0	82	0.68
6285326--6285423	19	5.0	19	72	12	65	23	2	1	73	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6285357--6285435	26	2.9	27	76	12	74	27	3	2	65	1.22
6285331--6285570	4	60.8	4	67	14	90	27	3	2	66	1.20
6285331--6285570	18	14.4	17	70	18	91	27	3	2	66	1.20
6286358--6286474	21	5.5	21	72	17	73	23	3	1	71	1.10
6286366--6286404	19	2.0	20	90	5	62	28	0	2	69	1.02
6286372--6286414	19	2.3	19	84	11	54	32	0	2	65	1.06
6286424--6286481	5	11.8	5	76	20	52	15	3	0	81	0.83
6286424--6286486	21	2.9	22	84	15	87	15	4	0	79	0.90
6286424--6286486	22	3.0	20	88	11	90	15	4	0	79	0.90
6286508--6286720	57	3.7	56	79	7	237	41	6	15	36	1.73
6286607--6286700	28	3.2	29	67	20	70	41	6	17	35	1.74
6286496--6286715	118	1.8	119	85	5	311	43	6	15	35	1.72
6286509--6286720	58	3.6	58	80	9	243	41	6	15	36	1.73
6286624--6286716	28	3.2	28	64	21	66	38	5	18	37	1.74
6290656--6290709	14	3.9	14	79	11	58	74	0	14	11	1.08
6292325--6292429	41	2.5	42	77	11	110	26	12	19	41	1.86
6292461--6292498	10	3.8	10	89	0	58	78	0	0	21	0.74
6292520--6292628	42	2.6	42	88	2	157	25	14	18	41	1.89
6292597--6292653	26	2.2	25	90	6	96	22	15	19	42	1.89
6292520--6292736	109	2.0	108	85	8	298	24	15	19	40	1.91
6292623--6292797	41	4.1	42	83	9	205	25	16	21	37	1.93
6292555--6292694	67	2.1	67	89	4	219	24	17	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6292635--6292800	83	1.9	86	85	6	230	24	15	21	38	1.92
6292635--6292800	42	3.9	41	83	8	192	24	15	21	38	1.92
6292984--6293021	12	3.2	12	85	10	51	18	0	2	78	0.86
6292989--6293032	19	2.2	21	88	8	65	25	0	2	72	0.96
6293091--6293149	22	2.6	22	81	5	64	28	5	5	61	1.39
6293108--6293169	18	3.2	18	81	11	61	29	4	4	61	1.37
6293113--6293212	26	3.6	27	69	27	73	26	5	3	66	1.27
6293387--6293416	14	2.1	14	93	0	51	63	10	26	0	1.26
6293713--6293764	20	2.6	21	93	6	90	50	0	0	50	1.00
6293798--6293830	12	2.8	12	86	4	50	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100