genome.fa.s113.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  93  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18436983--18437071	28	3.2	28	64	12	76	61	10	10	17	1.54
18436959--18437068	54	2.0	55	87	5	161	55	11	10	21	1.66
18438163--18438215	23	2.2	24	86	3	72	41	1	0	56	1.10
18438205--18438243	17	2.4	16	91	8	62	46	2	0	51	1.14
18438706--18438754	23	2.0	25	84	7	66	59	2	2	36	1.21
18438537--18438858	168	1.9	165	81	7	384	48	4	4	42	1.41
18443079--18443107	13	2.2	13	100	0	58	68	0	0	31	0.89
18448135--18449176	348	3.0	348	83	4	1299	35	15	13	35	1.86
18448084--18449234	357	3.2	353	82	5	1385	35	15	12	35	1.86
18454926--18454991	30	2.2	30	86	5	89	33	15	1	50	1.53
18455974--18456017	10	4.5	10	81	13	56	68	0	0	31	0.90
18461853--18461947	48	2.0	48	87	0	136	37	11	17	32	1.86
18462046--18462581	120	4.5	121	77	6	514	46	15	19	18	1.84
18467545--18467605	15	4.4	14	78	11	56	78	4	1	14	0.99
18467535--18467596	29	2.1	29	82	11	74	75	4	4	14	1.13
18472362--18472419	27	2.1	27	93	0	98	37	8	15	37	1.78
18473737--18473763	3	9.0	3	100	0	54	66	0	0	33	0.92
18473832--18473871	15	2.5	17	80	15	50	72	0	0	27	0.85
18476797--18476921	53	2.4	53	82	7	157	22	8	7	62	1.47
18476905--18477264	196	1.8	196	80	7	426	37	9	6	46	1.63
18477192--18477245	26	2.1	26	83	13	67	46	11	1	40	1.50
18477192--18477255	26	2.5	26	76	16	64	42	12	1	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18478274--18478308	18	1.9	18	88	0	52	2	0	8	88	0.61
18478402--18478480	36	2.1	37	86	4	106	45	22	8	22	1.80
18478365--18478521	79	2.0	78	83	6	201	43	21	10	24	1.84
18478365--18478697	41	8.1	41	75	10	279	45	20	9	24	1.82
18478437--18478697	124	2.1	124	82	5	312	46	20	9	24	1.79
18479048--18479199	58	2.6	58	88	7	227	34	18	11	36	1.86
18479164--18479225	21	3.0	21	95	0	106	40	16	9	33	1.81
18479163--18479307	75	2.0	71	84	8	184	42	17	8	31	1.79
18479230--18479322	22	4.1	22	80	10	116	43	16	8	32	1.78
18480699--18480743	21	2.2	20	84	4	54	4	13	0	82	0.82
18480718--18480749	9	3.6	9	100	0	64	0	9	0	90	0.45
18480691--18480757	18	3.7	18	78	7	73	5	16	0	77	0.95
18487346--18487397	20	2.7	20	96	3	97	34	21	19	25	1.96
18490458--18490509	21	2.5	21	90	6	79	50	0	0	50	1.00
18490458--18490509	22	2.5	22	93	6	90	50	0	0	50	1.00
18492840--18492872	10	3.7	9	88	11	50	24	0	0	75	0.80
18493223--18493269	17	2.8	17	84	9	53	6	12	0	80	0.88
18493232--18493269	15	2.4	16	86	4	51	2	15	0	81	0.80
18495263--18495314	3	17.3	3	100	0	104	32	0	0	67	0.91
18501756--18501800	20	2.3	20	88	3	65	68	2	13	15	1.30
18501841--18501897	27	2.1	27	83	0	69	66	14	0	19	1.25
18502007--18502043	20	1.9	18	89	10	56	72	2	2	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18502098--18502161	9	7.0	9	72	15	51	71	4	3	20	1.17
18502388--18502420	17	1.9	17	93	0	57	15	3	9	72	1.21
18502688--18502721	16	2.1	17	88	5	52	23	5	11	58	1.55
18503880--18503904	13	1.9	13	100	0	50	48	0	0	52	1.00
18504941--18504980	18	2.2	18	86	0	53	30	5	5	60	1.40
18507991--18508039	18	2.9	17	81	6	55	63	0	0	36	0.95
18507995--18508033	16	2.4	16	82	0	51	64	0	0	35	0.94
18512233--18512268	2	18.5	2	94	5	65	50	0	0	50	1.00
18512830--18512884	29	2.0	29	85	7	78	49	1	5	43	1.36
18513504--18513544	17	2.4	17	87	0	55	82	9	2	4	0.89
18513743--18513810	31	2.3	28	73	14	66	70	1	0	27	0.96
18513749--18513802	14	3.6	14	79	18	56	66	1	0	31	1.02
18513759--18513802	23	1.9	23	90	9	72	65	0	0	34	0.93
18514211--18514241	16	1.9	16	100	0	62	61	0	12	25	1.32
18534728--18534814	33	2.6	33	72	3	77	34	3	14	47	1.62
18535000--18535078	27	2.9	27	74	10	72	44	5	13	36	1.67
18540411--18540440	15	2.0	15	93	0	51	70	0	3	26	1.03
18541532--18541651	56	2.1	57	81	6	136	50	10	14	25	1.73
18545112--18545157	23	2.0	24	91	4	76	73	4	21	0	1.00
18545501--18545556	16	3.4	16	82	2	58	76	0	16	7	0.99
18546209--18546340	70	1.9	70	81	6	160	35	11	23	29	1.90
18546768--18547538	46	16.8	46	84	2	677	37	9	14	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18546856--18547540	21	30.0	20	66	20	130	37	9	14	38	1.79
18546768--18547538	92	8.4	92	80	5	749	37	9	14	38	1.79
18546882--18547517	117	5.5	117	77	8	570	37	9	14	38	1.79
18547511--18547576	33	2.1	32	85	5	89	40	9	10	39	1.71
18553306--18553353	20	2.3	21	83	16	73	41	0	0	58	0.98
18553298--18553348	20	2.4	21	87	12	70	49	0	0	50	1.00
18553367--18553405	19	2.0	21	85	10	55	66	0	0	33	0.92
18555774--18555806	10	3.7	9	88	11	50	24	0	0	75	0.80
18556163--18556204	19	2.2	19	87	8	59	2	19	0	78	0.86
18558202--18558249	3	16.0	3	100	0	96	33	0	0	66	0.92
18564710--18564754	20	2.3	20	88	3	65	68	2	13	15	1.30
18564962--18564998	19	1.9	20	88	5	58	75	2	2	18	1.04
18565066--18565126	18	3.6	16	77	8	50	75	6	4	13	1.16
18565349--18565381	17	1.9	17	93	0	57	15	3	9	72	1.21
18565648--18565682	16	2.1	17	89	5	54	22	5	11	60	1.52
18566873--18566898	13	2.0	13	100	0	52	53	0	0	46	1.00
18566874--18566919	23	2.1	21	84	8	56	50	0	0	50	1.00
18566873--18566921	22	2.3	21	76	13	55	46	0	0	53	1.00
18567908--18567947	18	2.2	18	86	0	53	30	5	5	60	1.40
18572637--18572674	19	2.0	19	89	0	58	63	0	0	36	0.95
18572871--18572926	28	2.0	27	86	10	78	60	3	7	28	1.40
18575246--18575343	8	11.0	9	71	9	51	79	5	5	10	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18575314--18575348	1	35.0	1	94	0	61	97	2	0	0	0.19
18576698--18576746	17	2.9	17	84	9	64	67	2	0	30	1.02
18578327--18578352	1	26.0	1	100	0	52	0	0	0	100	0.00
18586747--18586798	26	2.0	26	85	7	70	55	1	5	36	1.35
18588546--18588666	32	3.8	31	72	5	109	51	6	4	38	1.47
18588648--18588703	26	2.2	26	84	9	71	46	1	0	51	1.11
18594009--18594033	2	12.5	2	100	0	50	52	48	0	0	1.00
18595515--18595562	26	1.9	24	91	8	78	56	0	0	43	0.99
18595517--18595572	24	2.2	26	84	6	71	53	1	3	41	1.29
18596119--18596158	18	2.2	18	86	0	53	57	2	5	35	1.34
18596133--18596167	18	1.9	18	88	0	52	48	5	8	37	1.58
18596659--18596706	24	2.0	25	91	4	80	58	0	2	39	1.10
18596852--18596974	58	2.1	58	93	0	210	53	8	5	31	1.55
18598572--18598620	19	2.6	18	81	12	53	24	4	28	42	1.73
18598613--18598673	7	9.4	7	69	16	51	16	1	37	44	1.58
18598617--18598677	20	3.2	20	75	15	65	18	3	36	42	1.66
18598540--18598680	13	11.3	12	70	10	79	17	3	34	44	1.66
18598589--18598673	26	3.3	25	86	3	89	18	3	32	44	1.67
18598722--18598746	13	1.9	13	100	0	50	8	8	44	40	1.63
18598819--18598865	23	2.0	23	84	8	60	46	10	10	31	1.73
18600503--18600604	13	8.1	13	69	19	65	19	0	35	44	1.58
18600703--18600760	18	3.2	18	69	9	55	17	5	32	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18600788--18600851	27	2.3	28	86	5	94	15	0	34	50	1.45
18600890--18600927	20	2.0	20	89	5	60	15	2	36	44	1.61
18600904--18600947	13	3.5	13	81	6	54	15	2	34	47	1.58
18602878--18602922	10	4.4	10	82	2	54	26	13	20	40	1.89
18613124--18613173	15	3.3	15	80	2	55	66	4	4	26	1.27
18613871--18613904	17	2.1	17	89	10	54	44	5	0	50	1.26
18613980--18614335	192	1.9	191	81	6	443	35	8	8	48	1.64
18621395--18621421	2	13.5	2	100	0	54	48	0	0	51	1.00
18623431--18623472	17	2.5	17	80	3	50	57	2	0	40	1.12
18623445--18623549	30	3.6	29	83	3	129	50	3	4	40	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100