genome.fa.s113.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  45  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11369092--11369134	7	6.0	7	78	5	50	58	0	0	41	0.98
11369088--11369133	22	2.2	22	77	11	53	60	0	0	39	0.97
11371835--11372073	84	2.8	84	85	2	302	41	21	14	22	1.89
11371838--11372239	85	4.8	85	77	7	307	43	21	13	21	1.87
11372174--11372328	60	2.6	59	83	5	168	43	20	12	23	1.86
11374347--11374396	24	2.2	22	79	10	57	50	0	0	50	1.00
11375180--11375204	2	12.5	2	100	0	50	52	0	0	48	1.00
11375440--11375482	21	2.0	22	86	13	63	62	0	2	34	1.08
11380762--11380818	24	2.5	23	82	5	71	38	8	1	50	1.44
11381022--11381077	28	2.0	28	83	13	71	42	1	5	50	1.35
11381191--11381226	2	18.5	2	94	5	65	50	0	0	50	1.00
11387362--11387394	17	1.9	17	100	0	66	48	12	12	27	1.76
11388069--11388344	60	4.6	60	82	7	321	34	12	6	46	1.68
11388073--11388345	119	2.3	121	87	5	410	34	12	6	46	1.67
11388074--11388381	60	5.1	58	75	13	223	34	11	6	47	1.66
11388425--11388484	4	15.8	4	86	10	58	70	3	1	25	1.12
11388785--11388821	2	18.5	2	100	0	74	0	48	0	51	1.00
11389496--11389655	44	3.7	44	79	6	164	45	18	12	23	1.83
11389518--11389650	44	3.0	45	85	2	180	48	19	9	22	1.78
11389649--11389691	21	2.0	21	95	0	77	34	20	13	30	1.92
11389673--11389806	40	3.2	41	84	6	146	41	20	13	25	1.88
11390094--11390469	114	3.4	113	87	4	516	34	14	13	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11390491--11390745	79	3.2	79	85	3	352	34	16	11	37	1.85
11390687--11390930	65	3.7	63	80	12	195	36	15	9	38	1.81
11390686--11390955	21	12.0	21	75	14	195	36	15	9	38	1.80
11390758--11390981	25	9.6	25	82	7	219	37	12	8	41	1.75
11390754--11390976	71	3.2	70	81	10	237	36	13	8	41	1.75
11390689--11390981	96	3.2	92	80	5	285	37	14	9	38	1.78
11391983--11392054	8	9.2	8	73	11	51	6	16	0	76	0.99
11391981--11392056	38	2.0	38	84	5	100	6	17	0	76	0.99
11392003--11392061	14	4.5	13	75	14	59	5	13	0	81	0.85
11396123--11396372	60	4.2	59	83	6	306	34	8	5	51	1.57
11396123--11396372	119	2.1	123	85	6	334	34	8	5	51	1.57
11396461--11396492	3	10.7	3	100	0	64	68	0	0	31	0.90
11406655--11406680	9	2.9	9	100	0	52	11	0	53	34	1.37
11423912--11423957	22	2.1	22	95	0	83	30	6	8	54	1.56
11424786--11424812	14	1.9	14	100	0	54	88	7	3	0	0.61
11424978--11425060	23	3.6	23	96	0	148	19	38	9	32	1.84
11424973--11425072	46	2.2	46	87	0	146	19	39	10	32	1.84
11428539--11428594	23	2.5	23	91	2	87	26	19	19	33	1.96
11431769--11431801	9	3.7	9	95	0	57	90	0	3	6	0.52
11431767--11431802	17	2.1	17	90	10	56	86	0	2	11	0.68
11433501--11433591	41	2.2	41	88	3	130	36	19	10	32	1.87
11433661--11433899	121	2.0	120	90	0	379	33	14	15	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11433851--11433912	22	2.9	21	87	4	88	29	29	19	22	1.98
11433873--11434123	109	2.3	110	83	2	335	21	20	18	39	1.93
11434084--11434167	43	2.0	43	88	4	125	32	23	13	30	1.93
11434127--11434357	108	2.1	109	82	4	286	24	18	17	39	1.92
11434127--11434391	108	2.4	108	78	8	275	25	20	17	37	1.94
11434345--11434406	23	2.7	23	90	7	92	29	25	16	29	1.96
11433892--11434387	262	1.9	260	85	4	676	23	19	17	38	1.93
11434257--11435193	133	6.9	132	72	11	498	23	20	18	37	1.93
11434482--11434551	22	3.1	22	79	4	68	25	14	20	40	1.90
11434500--11434552	22	2.4	22	87	3	70	24	15	20	39	1.91
11434520--11434796	108	2.6	107	81	5	299	24	19	17	38	1.93
11434694--11434869	73	2.4	73	89	2	257	24	20	18	36	1.95
11435034--11435096	23	2.8	23	80	2	74	28	25	17	28	1.97
11434791--11435181	133	2.9	133	85	2	543	22	20	19	38	1.94
11435364--11435413	23	2.2	23	85	0	64	26	20	22	32	1.98
11435278--11435535	133	1.9	132	85	2	347	22	20	18	38	1.93
11434951--11435589	330	1.9	330	83	1	832	22	20	17	39	1.92
11435387--11435607	110	2.0	110	86	1	309	24	20	16	38	1.93
11435987--11436049	23	2.8	23	80	2	74	17	39	7	34	1.79
11438621--11438653	14	2.4	14	90	10	50	30	3	0	66	1.06
11441629--11441676	24	2.1	22	85	11	62	54	2	0	43	1.12
11441634--11441684	24	2.2	24	82	3	59	43	7	0	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11444454--11444520	33	2.0	33	97	0	125	38	19	2	38	1.67
11446613--11446665	26	2.0	28	81	7	65	37	1	0	60	1.08
11460496--11460555	31	1.9	31	93	0	102	21	11	8	58	1.59
11462696--11462759	35	1.9	35	81	9	80	53	3	1	42	1.26
11463029--11463079	18	3.0	17	75	8	50	52	1	1	43	1.23
11467198--11467231	17	1.9	18	94	5	61	55	0	0	44	0.99
11467290--11467343	26	2.0	26	82	3	63	61	1	0	37	1.07
11467838--11467869	16	2.0	16	93	0	55	65	3	0	31	1.08
11468064--11468110	22	2.0	22	84	8	58	59	0	0	40	0.97
11468135--11468223	18	4.9	19	68	18	64	56	2	0	41	1.12
11472325--11472351	12	2.2	12	100	0	54	0	7	0	92	0.38
11474257--11474292	2	18.0	2	100	0	72	50	0	0	50	1.00
11480617--11480651	16	2.2	16	94	0	61	42	11	17	28	1.83
11483559--11483642	27	3.0	27	72	17	73	59	0	0	40	0.97
11489917--11490002	32	2.7	32	89	7	131	40	12	6	39	1.70
11489954--11490005	16	3.2	16	70	8	52	46	11	5	36	1.64
11493344--11493399	23	2.5	23	85	8	71	71	1	23	3	1.11
11498747--11498790	22	2.0	21	87	12	63	11	2	4	81	0.92
11499721--11499771	19	2.7	20	81	9	70	35	3	0	60	1.15
11500988--11501118	48	2.8	48	86	6	180	41	14	10	32	1.80
11501325--11501373	23	2.1	23	85	7	64	53	16	6	24	1.66
11501208--11501507	140	2.1	140	84	3	399	44	18	11	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11501490--11501963	82	5.8	82	87	2	598	38	21	14	26	1.91
11501501--11502007	124	4.1	123	76	7	515	38	20	14	26	1.91
11501970--11502185	97	2.2	99	83	4	267	41	20	12	25	1.87
11502151--11502235	43	2.0	43	92	0	143	41	21	10	27	1.85
11502446--11502548	35	2.9	35	86	0	143	39	11	13	34	1.81
11502523--11502573	25	2.1	25	88	3	77	35	11	13	39	1.82
11502485--11502599	60	1.9	59	87	1	167	38	12	13	36	1.81
11503810--11503834	13	1.9	13	100	0	50	0	0	4	96	0.24
11507229--11507275	13	3.5	13	83	13	51	0	4	19	76	0.95
11509920--11509963	22	1.9	24	81	9	56	75	0	18	6	1.02
11509916--11509969	28	1.9	28	81	7	65	77	0	14	7	0.97
11516233--11516487	129	2.0	129	91	3	415	34	12	6	47	1.67
11516386--11516497	59	1.9	60	89	7	176	33	12	6	48	1.66
11516527--11516551	10	2.5	10	100	0	50	84	0	0	16	0.63
11517403--11517439	18	1.9	18	89	10	56	75	0	0	24	0.80
11517652--11518100	88	5.1	89	77	6	283	47	18	12	22	1.81
11517652--11518195	45	12.3	44	74	7	305	46	18	12	22	1.82
11517856--11518182	175	1.9	176	91	1	541	45	19	13	20	1.84
11518051--11518084	15	2.3	15	90	10	52	55	17	8	17	1.66
11517876--11518158	130	2.1	130	77	8	286	46	20	12	20	1.82
11519262--11519300	6	6.7	6	82	5	53	10	12	0	76	1.01
11519252--11519307	23	2.5	22	85	11	69	10	8	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11519255--11519307	18	2.9	18	86	13	74	11	9	0	79	0.94
11519268--11519302	11	3.1	11	87	4	52	8	11	0	80	0.92
11528705--11528730	4	6.5	4	100	0	52	53	0	0	46	1.00
11529977--11530009	14	2.3	15	89	5	50	27	0	9	63	1.24
11529807--11530129	130	2.4	130	85	7	418	35	12	5	46	1.64
11529983--11530127	59	2.5	60	80	12	183	35	9	3	51	1.52
11530154--11530184	6	5.3	6	92	7	55	83	0	0	16	0.64
11530154--11530184	11	2.7	12	95	5	55	83	0	0	16	0.64
11531848--11531884	15	2.4	16	86	8	51	51	5	0	43	1.24
11533576--11533614	21	1.9	21	89	5	62	25	0	12	61	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100