genome.fa.s113.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  100  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19777673--19780701	181	17.0	181	74	8	2012	42	10	7	39	1.67
19780126--19780172	17	2.7	17	80	12	51	42	12	2	42	1.55
19777673--19780650	366	8.3	362	72	10	1194	42	10	7	39	1.67
19780995--19789800	181	49.1	179	72	10	4746	41	10	8	39	1.69
19782920--19782978	18	3.3	18	67	21	52	42	8	8	40	1.66
19782913--19782998	35	2.5	35	94	0	145	41	10	8	39	1.69
19782737--19783172	213	2.0	212	81	8	501	42	9	6	41	1.63
19782948--19789800	356	19.2	354	74	8	4061	41	9	8	39	1.69
19784136--19784173	20	1.9	20	88	0	58	55	2	7	34	1.43
19786038--19786079	21	2.0	21	86	4	59	40	7	0	52	1.29
19783053--19791508	537	15.8	535	74	9	3193	41	9	8	40	1.68
19782948--19789330	716	8.9	716	73	10	1798	41	10	8	39	1.69
19789652--19789928	147	1.9	146	80	7	328	40	10	9	40	1.71
19789484--19790124	328	2.0	321	79	6	682	40	9	7	41	1.68
19789799--19791508	180	9.5	180	78	6	1547	41	9	8	40	1.68
19789799--19791504	361	4.7	356	78	7	1632	41	9	8	40	1.68
19793629--19794117	177	2.8	173	77	8	414	43	8	7	40	1.64
19796103--19797942	181	10.3	181	75	8	1203	41	10	8	40	1.69
19797152--19797191	18	2.4	17	87	8	55	45	7	2	45	1.45
19798121--19798447	175	1.9	176	82	7	414	38	9	11	40	1.74
19798280--19798316	17	2.1	18	85	14	51	56	5	2	35	1.36
19798443--19798490	25	2.0	23	84	15	62	58	2	2	37	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19797973--19801468	180	19.6	182	72	10	809	41	9	8	40	1.68
19797942--19807185	181	50.9	180	71	10	3606	41	9	8	40	1.68
19797950--19801468	361	9.8	359	73	9	2136	41	9	8	40	1.68
19800779--19800811	16	2.1	17	88	11	52	51	6	9	33	1.58
19801394--19801554	86	1.9	86	82	2	207	36	11	7	44	1.68
19801466--19814670	542	24.4	538	72	10	5975	41	9	8	40	1.68
19801739--19807208	361	15.2	359	76	7	4088	41	9	8	40	1.68
19806551--19806598	17	2.7	18	78	12	55	37	8	8	45	1.64
19806735--19808231	507	2.9	505	79	9	1233	42	10	7	39	1.68
19806557--19807891	683	1.9	684	78	8	1426	42	10	8	39	1.69
19807210--19808244	176	5.8	178	72	14	675	43	10	7	38	1.67
19808252--19811576	181	18.6	178	74	9	1298	42	9	8	39	1.69
19808303--19814647	357	17.7	358	70	11	2665	42	9	8	40	1.68
19808288--19814670	180	35.6	181	71	11	2765	42	9	8	39	1.68
19809162--19811576	534	4.5	534	75	9	1398	42	9	8	39	1.69
19809174--19811347	894	2.4	886	77	6	1939	42	9	8	39	1.69
19811520--19811706	95	2.0	95	93	0	320	49	9	8	33	1.64
19811656--19812003	177	2.0	178	80	2	396	40	9	7	42	1.66
19814626--19814675	22	2.3	22	80	10	59	46	6	8	40	1.58
19814669--19821636	181	38.7	181	71	12	2976	39	8	9	42	1.68
19817114--19818107	531	1.9	531	81	3	1212	40	8	10	41	1.69
19819090--19849395	362	84.6	354	72	10	12981	40	8	9	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19822152--19824983	180	15.7	177	75	7	1553	41	8	9	40	1.68
19825171--19826720	181	8.6	178	76	9	1253	41	8	9	41	1.67
19825171--19826720	179	8.6	178	77	8	1349	41	8	9	41	1.67
19825171--19849395	362	67.6	358	73	9	14112	40	8	9	41	1.69
19826476--19826518	20	2.3	18	84	8	50	51	4	6	37	1.50
19826718--19829269	181	14.1	180	75	6	1743	39	8	10	41	1.69
19826718--19849385	723	31.6	715	73	10	8787	40	8	9	41	1.69
19829298--19832156	181	15.9	181	76	6	1920	40	8	9	41	1.68
19832147--19832185	18	2.2	18	86	9	53	33	10	0	56	1.33
19832297--19836465	181	23.1	180	75	7	3098	39	8	10	41	1.69
19834037--19834069	18	1.9	17	88	11	50	48	6	6	39	1.53
19836470--19839303	180	15.7	180	76	7	2076	40	8	9	40	1.69
19839541--19847793	181	46.0	176	74	9	4919	40	8	9	41	1.69
19844232--19844264	18	1.9	17	88	11	50	48	6	6	39	1.53
19843700--19849588	181	32.7	181	72	8	3183	40	8	9	41	1.69
19843751--19847794	541	7.5	536	76	9	2520	40	8	9	41	1.69
19839528--19849395	543	18.3	538	73	9	4830	40	8	9	41	1.69
19847931--19849385	182	8.1	182	73	8	906	39	8	9	42	1.68
19851362--19852603	181	6.9	175	73	9	641	39	7	10	41	1.69
19851362--19852568	358	3.3	361	74	7	815	40	7	10	41	1.68
19852719--19856039	181	18.6	180	72	10	1846	41	9	7	40	1.67
19852719--19856039	362	9.3	362	75	8	2361	41	9	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19854301--19855868	525	3.0	513	78	9	1486	40	10	7	41	1.68
19852619--19856022	714	4.8	697	74	10	2355	41	9	7	41	1.67
19857974--19858030	18	3.1	18	82	5	69	33	7	10	49	1.64
19858002--19858073	23	3.0	23	86	8	90	34	4	8	52	1.51
19858029--19858083	26	2.1	26	100	0	110	30	3	10	54	1.52
19859560--19862200	181	14.7	180	76	7	1993	41	7	9	41	1.65
19859218--19859869	351	1.9	350	79	3	747	39	6	9	43	1.65
19859931--19859964	13	2.4	15	90	9	54	20	0	2	76	0.92
19859173--19863906	718	6.6	710	72	11	2463	40	7	9	42	1.67
19862267--19863904	182	9.1	180	75	7	1103	39	8	10	42	1.69
19862554--19863906	181	7.5	179	73	9	518	39	8	9	42	1.69
19863955--19864021	23	2.8	24	78	13	59	52	0	2	44	1.16
19864215--19864315	4	25.0	4	66	20	50	44	0	1	53	1.11
19864216--19864291	14	5.4	14	79	16	70	43	0	1	55	1.08
19864216--19864287	28	2.5	30	77	16	82	43	0	1	55	1.08
19864576--19865065	180	2.7	182	79	5	467	44	8	8	38	1.65
19865753--19866157	181	2.2	180	81	3	458	37	6	13	43	1.70
19866283--19866329	17	2.7	17	75	15	51	57	2	0	40	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100

The End!