genome.fa.s113.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  4  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618450--618488	11	3.4	12	86	10	55	38	0	0	61	0.96
622528--622561	14	2.4	14	95	0	59	26	29	20	23	1.99
630202--630228	11	2.5	11	100	0	54	25	0	7	66	1.17
630982--631025	19	2.3	18	81	11	52	13	9	18	59	1.60
632565--632673	55	2.0	55	83	0	137	20	36	15	27	1.93
640911--640976	19	3.6	19	70	15	57	48	1	3	46	1.26
640899--640985	42	2.1	42	81	12	99	45	2	2	49	1.27
644782--644809	12	2.3	12	100	0	56	42	0	7	50	1.30
646804--646836	2	16.0	2	93	6	57	48	0	48	3	1.17
647647--647673	2	13.5	2	100	0	54	51	0	0	48	1.00
655982--656021	21	2.0	20	85	5	53	52	2	2	42	1.28
656029--656067	15	2.5	15	88	12	53	48	0	2	48	1.15
656154--656248	5	18.8	5	74	10	70	41	0	1	57	1.05
656155--656248	7	14.1	7	66	29	55	41	0	1	57	1.06
656155--656246	31	2.7	33	77	17	91	41	0	1	57	1.06
656356--656403	22	2.1	23	84	3	62	39	8	2	50	1.44
656545--656611	27	2.5	27	90	0	107	37	0	10	52	1.36
656616--656657	20	2.2	20	87	8	61	57	0	0	42	0.99
658420--658446	2	13.5	2	100	0	54	51	0	0	48	1.00
658641--658665	3	8.3	3	100	0	50	32	0	0	68	0.90
660248--660279	16	1.9	17	93	6	57	50	3	0	46	1.17
660315--660399	30	2.9	29	76	15	84	45	1	9	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663218--663592	188	2.0	188	96	0	696	27	28	7	36	1.84
665895--665992	50	2.0	50	89	0	151	43	3	34	18	1.65
668835--668862	2	14.0	2	100	0	56	0	50	0	50	1.00
672374--672540	84	2.0	84	96	0	307	26	26	12	33	1.92
675976--676019	22	2.0	22	95	0	79	43	13	11	31	1.80
679456--679490	18	1.9	18	88	0	52	34	22	17	25	1.96
679690--679746	23	2.5	23	91	0	87	45	15	26	12	1.82
679690--679753	23	2.8	23	87	0	74	48	14	26	10	1.76
679896--679939	22	2.0	22	95	0	79	43	9	11	36	1.72
689223--689282	27	2.1	29	85	11	81	51	1	0	46	1.10
693131--693193	32	2.0	32	96	0	117	44	22	3	30	1.68
700993--701041	18	2.9	17	82	8	55	67	2	0	30	1.02
700992--701035	22	2.0	22	90	0	70	65	2	0	31	1.05
705523--705556	2	17.0	2	100	0	68	50	0	0	50	1.00
711999--712059	32	1.9	32	86	3	88	22	24	24	27	2.00
712019--712391	195	1.9	194	89	0	575	31	15	20	33	1.93
717428--717463	3	12.0	3	100	0	72	33	0	66	0	0.92
718236--718271	6	6.0	6	86	0	54	0	38	11	50	1.38
718236--718271	18	2.0	18	100	0	72	0	38	11	50	1.38
720600--720647	25	1.9	25	84	16	64	43	4	4	47	1.41
726770--726801	2	16.0	2	100	0	64	50	0	0	50	1.00
746624--746652	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763286--763322	2	18.5	2	100	0	74	0	48	0	51	1.00
763323--763363	2	20.5	2	100	0	82	48	0	0	51	1.00
785666--785705	6	6.7	6	97	0	71	50	12	0	37	1.41
786667--786728	20	3.2	20	73	17	58	32	3	9	54	1.49
786981--787031	21	2.4	21	83	0	66	33	3	3	58	1.35
788073--788157	10	8.4	9	71	15	53	31	1	10	56	1.41
788133--788250	11	11.3	10	66	24	57	38	5	4	51	1.43
788255--788372	41	2.9	40	81	5	148	30	5	14	50	1.64
788052--788485	21	20.8	21	69	13	137	33	4	10	51	1.56
788352--788532	63	2.9	63	79	6	181	30	3	12	53	1.54
788436--788553	21	5.7	20	75	10	85	31	2	11	54	1.50
788455--788553	41	2.4	42	78	10	105	33	2	11	53	1.48
788507--788569	21	3.0	21	81	6	65	34	3	7	53	1.46
788661--788712	27	1.9	27	84	0	68	46	5	11	36	1.64
794394--794443	19	2.6	19	84	15	59	78	2	4	16	1.00
794401--794443	10	4.6	9	82	8	50	79	2	2	16	0.95
795338--795868	118	4.6	116	79	7	429	44	15	21	19	1.87
795555--796139	119	4.9	117	81	2	528	45	14	20	19	1.85
795536--796137	236	2.5	232	79	4	607	46	14	20	19	1.84
801713--802071	69	5.2	69	80	6	307	41	14	15	28	1.86
801965--802071	34	3.1	34	73	12	110	41	15	15	27	1.88
803045--803091	24	2.0	24	86	0	67	0	12	6	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805610--805743	64	2.1	64	91	1	216	24	14	27	33	1.94
808506--808550	3	14.7	3	81	4	54	62	2	4	31	1.27
811278--811315	20	1.9	20	84	10	51	76	2	7	13	1.11
819380--819418	14	2.8	14	84	0	51	12	10	0	76	1.01
823236--823276	17	2.4	17	87	4	55	12	17	7	63	1.50
823637--823688	14	3.6	14	82	7	50	7	1	9	80	0.97
823629--823722	12	8.0	12	74	8	52	11	1	9	77	1.04
823629--823693	27	2.5	27	87	5	89	9	1	7	81	0.93
823924--824598	49	14.0	48	82	7	739	35	23	13	27	1.92
823921--824598	290	2.3	290	84	5	881	35	23	13	27	1.92
823924--824589	241	2.8	239	83	5	847	35	23	13	27	1.92
825315--825354	17	2.4	17	95	0	71	7	5	0	87	0.66
836756--836796	22	1.9	21	85	5	55	7	4	9	78	1.10
836759--836805	14	3.3	14	77	16	51	6	4	10	78	1.06
836776--836846	36	2.1	36	85	12	98	16	1	8	73	1.15
836776--836872	43	2.2	45	83	5	117	19	1	6	73	1.11
846146--846364	58	3.8	59	84	8	288	37	11	6	44	1.66
846420--846452	3	11.0	3	100	0	66	66	0	0	33	0.92
846901--846961	31	2.0	31	93	0	104	50	13	11	24	1.74
847307--847385	32	2.5	32	79	8	81	58	1	5	35	1.28
847328--847445	61	1.9	61	82	6	148	56	1	1	39	1.19
847422--847471	6	7.4	7	84	13	52	70	2	2	26	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847322--847464	59	2.3	58	80	13	155	58	1	2	37	1.21
847654--847862	42	5.0	41	80	10	210	39	21	14	24	1.91
847698--847946	83	3.1	82	78	11	241	38	19	13	28	1.90
847805--847946	77	1.9	75	86	2	203	41	17	11	29	1.84
848947--848986	20	2.0	19	85	9	53	10	7	0	82	0.84
859370--859689	58	5.7	57	80	14	371	37	12	6	42	1.70
859398--859689	105	2.7	105	85	9	356	38	11	6	43	1.68
859713--859771	22	2.7	22	77	15	59	62	5	0	32	1.17
860648--860767	6	17.7	7	75	17	53	65	0	2	31	1.12
863395--863439	23	2.0	23	95	0	81	44	2	35	17	1.62
864710--864787	38	2.1	38	95	0	138	19	6	11	62	1.49
864720--864784	20	3.3	20	67	16	55	20	6	10	63	1.48
868576--868625	25	2.0	25	100	0	100	24	4	28	44	1.72
868644--868815	80	2.2	80	94	0	299	24	26	18	30	1.98
870569--870595	14	1.9	14	100	0	54	14	3	0	81	0.82
870588--870852	58	4.6	56	83	10	306	46	4	9	39	1.57
870759--870849	29	3.2	27	67	17	67	45	4	10	39	1.60
870588--870852	116	2.3	114	85	7	342	46	4	9	39	1.57
872047--872073	2	13.5	2	100	0	54	51	0	0	48	1.00
873092--873134	6	7.2	6	97	0	77	0	18	0	81	0.69
888636--888699	24	2.6	25	83	14	80	51	0	4	43	1.22
888637--888691	23	2.5	22	80	8	67	52	0	5	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888636--888741	26	4.3	25	75	17	82	52	0	3	43	1.19
888689--888758	26	2.7	27	77	14	76	52	0	1	45	1.09
888742--888769	14	2.0	14	100	0	56	42	0	0	57	0.99
907459--907782	160	2.0	160	98	0	621	29	23	16	30	1.96
916148--916184	4	9.2	4	93	0	65	27	24	0	48	1.51
916182--916207	2	13.0	2	100	0	52	50	0	0	50	1.00
921263--921306	21	2.2	20	84	15	56	59	0	2	38	1.10
927936--927982	21	2.2	21	88	0	67	36	4	6	53	1.46
931300--931339	14	2.9	13	82	10	53	17	0	27	55	1.43
931366--931556	58	3.3	57	84	7	215	20	1	32	45	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100