genome.fa.s113.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  88  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17704582--17704640	31	1.9	31	85	0	82	33	8	5	52	1.54
17718343--17718427	41	2.0	42	86	8	120	48	12	5	32	1.66
17722951--17722990	13	3.1	12	86	13	53	85	2	12	0	0.71
17722951--17723000	13	3.9	13	79	10	50	80	2	16	2	0.91
17724269--17724625	55	6.5	55	73	8	271	21	20	16	41	1.90
17724269--17724625	165	2.2	164	78	8	359	21	20	16	41	1.90
17724881--17725092	15	13.4	16	75	12	138	31	1	6	61	1.29
17724886--17725083	5	37.6	5	79	7	103	31	1	6	61	1.28
17724913--17725092	3	62.3	3	72	19	118	30	0	6	62	1.23
17726140--17726225	46	1.9	45	83	9	113	39	13	9	37	1.78
17729438--17729528	46	2.0	46	100	0	182	41	10	18	28	1.84
17738156--17738201	3	15.3	3	100	0	92	67	0	0	32	0.91
17738862--17738967	3	36.0	3	83	3	135	32	4	1	61	1.27
17739896--17739936	15	2.7	16	81	7	50	21	7	0	70	1.11
17739935--17739982	3	16.0	3	100	0	96	33	0	0	66	0.92
17739981--17740057	3	25.7	3	100	0	154	33	32	0	33	1.58
17740082--17740107	3	8.7	3	100	0	52	0	0	30	69	0.89
17743925--17743977	27	2.0	27	92	0	88	28	16	24	30	1.97
17744755--17744791	15	2.4	15	90	4	56	72	0	18	8	1.08
17744764--17744798	15	2.4	15	95	4	63	77	0	17	5	0.96
17744896--17744928	10	3.3	10	100	0	66	30	30	0	39	1.57
17746087--17746202	46	2.5	45	83	5	144	39	7	14	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17746104--17746179	23	3.3	22	71	10	64	40	7	15	35	1.77
17746288--17746336	24	2.1	23	84	3	62	34	6	10	48	1.62
17746241--17746337	45	2.2	44	84	1	131	37	10	8	44	1.69
17746254--17746336	23	3.7	23	69	9	71	37	9	7	45	1.65
17746448--17746513	17	3.8	17	84	4	78	39	21	10	28	1.86
17746901--17747128	66	3.4	66	71	10	153	21	22	11	43	1.85
17747663--17747707	3	15.0	3	100	0	90	33	0	0	66	0.92
17747976--17748037	3	20.7	3	100	0	124	33	32	0	33	1.58
17749117--17749160	3	14.7	3	95	0	61	0	6	31	61	1.22
17752005--17752041	19	1.9	19	88	0	56	54	0	0	45	1.00
17751965--17752068	51	2.0	52	83	9	133	50	0	0	49	1.07
17752156--17752240	12	7.0	12	71	12	57	64	2	1	31	1.13
17752593--17752644	24	2.3	22	81	15	54	48	1	0	50	1.12
17756185--17756215	4	7.8	4	92	0	53	48	0	3	48	1.17
17757110--17757165	3	18.7	3	100	0	112	66	0	0	33	0.92
17757625--17757656	14	2.2	15	94	5	57	59	0	0	40	0.97
17757950--17757979	2	15.0	2	92	0	51	0	46	0	53	1.00
17758631--17758672	20	2.0	21	86	4	59	50	7	0	42	1.30
17761263--17761886	58	10.7	58	87	6	768	45	6	11	36	1.67
17761264--17761886	176	3.6	170	85	7	776	44	6	11	36	1.67
17761263--17761886	118	5.4	115	85	7	796	45	6	11	36	1.67
17765280--17765332	12	4.3	12	86	13	81	75	0	15	9	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17765276--17765362	20	3.9	22	72	20	65	70	0	17	12	1.17
17765280--17765341	11	5.2	11	83	16	63	75	0	16	8	1.02
17766931--17767098	41	4.1	41	95	0	282	23	16	24	36	1.94
17767218--17767257	14	2.9	14	80	0	53	80	7	7	5	1.03
17769539--17769578	19	2.1	20	86	9	57	12	7	2	77	1.07
17769576--17770064	59	8.4	58	83	4	549	44	7	11	36	1.69
17769807--17769839	16	2.0	17	88	5	50	51	9	0	39	1.34
17769596--17770099	117	4.3	115	81	5	550	43	6	12	36	1.70
17770834--17770868	2	17.5	2	93	0	61	2	0	45	51	1.16
17771809--17771858	20	2.5	20	84	15	68	26	6	14	54	1.63
17773298--17773335	16	2.4	16	83	12	51	26	0	10	63	1.27
17776841--17776880	10	3.9	10	96	3	71	30	7	2	60	1.38
17781044--17781071	5	5.6	5	100	0	56	39	0	0	60	0.97
17783179--17783225	21	2.2	22	81	11	62	48	4	0	46	1.21
17786474--17786775	76	3.7	82	77	16	306	47	10	5	37	1.60
17786474--17786775	158	1.9	160	85	6	416	47	10	5	37	1.60
17789956--17789990	17	2.1	17	89	10	54	34	0	2	62	1.10
17804089--17804122	14	2.3	15	90	5	52	67	0	8	23	1.18
17805905--17805979	19	3.7	20	73	22	66	61	5	2	30	1.32
17805913--17805981	21	3.2	20	72	20	59	62	4	2	30	1.29
17811775--17811814	3	13.3	3	84	10	55	0	35	2	62	1.09
17814345--17814388	22	2.0	22	95	0	79	43	9	11	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17818219--17818262	22	2.0	22	95	0	79	43	13	11	31	1.80
17819111--17819136	8	3.2	8	100	0	52	88	0	11	0	0.52
17819815--17819848	15	2.2	16	89	5	52	82	2	0	14	0.79
17822077--17822144	34	2.0	34	97	0	127	20	22	17	39	1.92
17825003--17825034	15	2.1	15	100	0	64	12	25	21	40	1.88
17825480--17825508	2	14.5	2	100	0	58	51	0	0	48	1.00
17826950--17827022	34	2.1	34	82	0	83	35	9	15	39	1.80
17830742--17830781	21	1.9	21	90	10	64	60	7	30	2	1.38
17831364--17831392	13	2.1	14	93	6	51	27	17	13	41	1.87
17831364--17831392	7	4.3	7	91	8	51	27	17	13	41	1.87
17833655--17833855	64	3.2	63	73	7	192	34	14	13	37	1.86
17833683--17833925	126	1.9	126	85	5	330	32	16	12	38	1.85
17838085--17838116	15	2.1	16	94	5	57	43	0	0	56	0.99
17838001--17838150	60	2.5	58	84	11	189	36	12	6	45	1.66
17838183--17838253	25	2.7	25	79	12	72	78	1	5	14	0.99
17838170--17838253	41	2.0	42	84	11	111	77	1	7	14	1.04
17838211--17838249	16	2.5	16	83	4	53	84	0	5	10	0.76
17838186--17838260	5	14.4	5	75	18	64	78	1	6	13	1.00
17838194--17838260	16	4.2	16	71	19	52	79	0	7	13	0.94
17838186--17838260	26	2.9	25	75	18	66	78	1	6	13	1.00
17839183--17839216	18	1.9	18	88	5	52	73	2	0	23	0.97
17839133--17839227	45	2.2	43	81	7	102	69	6	5	18	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17839160--17839230	22	3.2	21	75	11	54	66	5	4	23	1.31
17839357--17839440	20	4.2	19	81	15	89	76	1	3	19	1.00
17839613--17839840	41	5.4	43	79	5	126	36	21	17	24	1.94
17839693--17839870	41	4.3	42	86	2	261	35	21	16	25	1.94
17840886--17840945	14	3.9	15	89	10	86	11	11	1	75	1.13
17840886--17840944	9	7.7	7	83	12	57	11	11	1	74	1.15
17840885--17840945	8	7.8	8	82	17	83	11	11	1	75	1.12
17840884--17840937	9	6.4	9	83	12	71	11	11	1	75	1.11
17840886--17840946	15	3.9	16	87	12	83	11	11	1	75	1.12
17840884--17840950	25	2.6	25	84	11	84	11	11	1	74	1.14
17840886--17840946	33	1.9	33	90	9	101	11	11	1	75	1.12
17848166--17848197	15	2.1	16	94	5	57	56	6	18	18	1.62
17851301--17851655	58	6.1	57	85	6	405	36	12	7	43	1.70
17851403--17851499	32	3.2	32	64	16	89	37	9	7	46	1.64
17851301--17851624	174	1.9	173	85	5	447	36	13	7	42	1.73
17851304--17851624	116	2.8	115	87	4	466	36	14	6	42	1.72
17851663--17851742	17	5.0	15	72	15	63	76	2	7	13	1.11
17851669--17851741	6	12.5	6	71	16	55	78	1	6	13	1.02
17851661--17851741	5	15.4	5	71	21	51	77	2	6	13	1.05
17851651--17851741	11	8.4	11	74	16	66	76	2	6	14	1.07
17851765--17851807	4	10.8	4	89	0	68	76	2	0	20	0.89
17851765--17851815	12	4.2	12	89	2	75	78	1	0	19	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17852792--17852901	39	2.8	40	82	9	104	73	1	3	20	1.08
17852837--17852900	6	10.2	6	80	12	67	78	1	1	18	0.92
17854815--17854855	19	2.2	19	86	0	55	14	2	4	78	1.03
17854815--17854980	6	26.3	6	76	11	64	21	1	6	71	1.16
17854873--17854907	13	2.8	12	87	8	52	14	2	2	80	0.95
17854913--17854984	3	24.7	3	88	5	103	29	0	4	66	1.10
17855185--17855226	19	2.2	19	91	8	68	73	0	4	21	1.01
17856891--17856920	16	1.9	15	93	6	51	6	16	10	66	1.41
17859448--17859474	14	1.9	14	100	0	54	37	0	3	59	1.15
17859573--17860194	58	10.5	58	81	10	724	34	13	8	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100