genome.fa.s113.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  97  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19215379--19215762	51	7.5	51	74	12	250	36	20	11	30	1.89
19226806--19226849	20	2.3	19	92	4	70	6	2	6	84	0.86
19227973--19228029	17	3.2	17	72	5	51	29	3	1	64	1.20
19229105--19229152	16	3.1	16	79	11	55	79	2	14	4	0.98
19233780--19233840	3	21.0	3	86	6	90	27	0	1	70	0.97
19233873--19233915	12	3.4	12	81	18	52	0	20	0	79	0.74
19233846--19233919	24	3.0	24	76	11	78	1	22	2	72	1.04
19234291--19234338	13	3.8	12	81	15	53	72	20	2	4	1.11
19241371--19241414	14	3.1	14	81	15	54	11	27	2	59	1.44
19242474--19242498	13	1.9	13	100	0	50	56	12	16	16	1.68
19245719--19246304	92	6.3	89	86	5	670	27	13	22	36	1.92
19245714--19246304	184	3.2	182	84	6	742	27	13	22	36	1.92
19246664--19246721	10	5.6	10	76	8	62	1	24	0	74	0.92
19246663--19246721	14	4.1	14	73	16	50	1	23	0	74	0.91
19247075--19247121	13	3.7	13	83	13	62	76	23	0	0	0.78
19247308--19247350	16	2.5	17	81	7	52	76	2	9	11	1.10
19248879--19248917	14	2.8	13	81	11	51	53	0	5	41	1.23
19249031--19249081	16	3.6	16	68	29	51	45	0	3	50	1.20
19249032--19249081	26	2.0	25	92	4	82	44	0	4	52	1.20
19249052--19249091	15	2.6	16	84	4	55	50	0	2	47	1.14
19249179--19249253	26	3.0	27	81	14	72	42	1	1	54	1.17
19249178--19249419	18	14.2	17	71	20	141	40	2	2	54	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19249177--19249321	23	6.3	25	68	22	97	42	1	1	55	1.17
19249292--19249400	56	1.9	56	85	3	148	37	2	3	55	1.32
19249290--19249454	74	2.3	70	80	13	201	36	2	3	57	1.27
19249285--19249449	18	9.2	18	69	13	65	37	2	3	56	1.28
19249801--19249835	18	1.9	18	100	0	70	60	0	0	40	0.97
19249867--19249921	18	3.2	17	77	12	58	38	1	1	58	1.20
19249938--19249999	26	2.4	25	83	2	79	45	1	0	53	1.10
19251766--19251814	10	4.8	10	85	14	57	40	8	10	40	1.69
19251766--19251805	21	2.0	20	95	5	71	40	7	12	40	1.71
19251766--19251815	21	2.5	20	78	12	57	42	8	10	40	1.68
19254091--19254130	15	2.5	16	88	8	55	15	5	0	80	0.88
19254113--19254180	35	2.0	35	88	5	104	35	7	2	54	1.43
19254113--19254199	35	2.5	33	83	9	95	29	5	4	59	1.41
19256654--19256696	22	2.0	22	85	0	59	34	4	9	51	1.55
19256899--19256956	11	4.8	11	74	17	53	75	3	6	13	1.13
19276665--19276707	13	3.3	13	83	0	59	60	9	0	30	1.28
19278629--19278694	23	2.9	23	79	0	78	37	9	18	34	1.82
19278659--19278723	25	2.7	24	84	11	80	32	10	23	33	1.89
19278659--19278723	24	2.7	24	81	11	71	32	10	23	33	1.89
19278801--19278928	45	2.9	45	83	5	145	42	2	15	39	1.60
19278804--19278952	22	6.7	22	80	6	147	40	2	16	40	1.62
19278811--19278952	45	3.2	43	78	8	142	41	2	16	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19278912--19278974	22	2.8	22	87	2	81	36	4	20	38	1.74
19278902--19278986	22	3.8	22	73	13	66	34	7	20	38	1.79
19278979--19279043	22	3.0	21	74	12	67	43	12	16	27	1.84
19279106--19279175	22	3.1	22	81	2	86	28	22	12	35	1.91
19279091--19279177	22	4.0	22	74	5	77	25	20	16	37	1.93
19285902--19286717	343	2.4	339	82	7	957	36	15	14	32	1.89
19286807--19286926	63	1.9	63	81	3	143	42	8	16	32	1.78
19287263--19287423	62	2.6	62	75	6	164	39	14	14	31	1.86
19290944--19291015	36	2.0	36	94	0	126	43	5	13	37	1.68
19295141--19295277	54	2.5	55	82	3	170	47	12	10	29	1.75
19295314--19295450	56	2.5	55	81	1	175	40	16	15	27	1.88
19295431--19295526	48	2.0	49	85	2	131	44	12	14	28	1.81
19297985--19298055	13	5.4	13	73	9	63	59	9	2	28	1.44
19298010--19298039	15	2.0	15	93	0	51	66	10	0	23	1.21
19299535--19299576	5	8.2	5	82	12	50	76	0	0	23	0.79
19313550--19313585	18	2.0	18	100	0	72	44	5	0	50	1.25
19314039--19314102	26	2.4	27	86	2	85	45	1	0	53	1.10
19314801--19314933	62	2.2	62	84	9	166	37	9	9	42	1.71
19315209--19315375	62	2.7	61	81	7	169	37	10	8	43	1.69
19315202--19315437	62	3.8	59	77	12	154	37	9	9	43	1.69
19315331--19315474	60	2.4	59	85	5	180	41	9	9	39	1.70
19316347--19316405	22	2.8	21	73	19	59	61	3	3	32	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19317031--19317072	7	6.1	7	83	2	50	45	7	0	47	1.30
19317264--19317288	6	4.2	6	100	0	50	48	0	0	52	1.00
19318026--19318059	16	2.1	17	88	5	52	70	8	0	20	1.13
19318013--19318063	17	2.8	18	80	14	61	66	7	0	25	1.18
19318508--19318551	23	2.0	23	81	4	54	59	11	0	29	1.32
19318413--19318879	238	2.0	239	90	3	735	47	7	6	38	1.58
19325334--19325382	24	2.0	24	84	0	62	22	4	10	63	1.43
19326426--19326452	12	2.2	12	100	0	54	51	40	0	7	1.30
19326422--19326454	16	2.1	16	94	0	57	51	39	0	9	1.34
19326430--19326456	14	1.9	14	100	0	54	51	40	0	7	1.30
19333750--19333778	2	14.5	2	100	0	58	51	0	0	48	1.00
19334667--19334698	2	16.0	2	100	0	64	50	0	0	50	1.00
19341671--19341734	32	2.0	32	93	0	110	46	6	9	37	1.61
19343909--19343961	25	2.2	24	83	10	63	79	1	1	16	0.92
19351247--19351294	2	24.0	2	95	0	87	0	47	0	52	1.00
19358795--19358899	53	2.0	54	88	3	160	35	16	21	26	1.94
19359892--19359983	31	3.0	31	77	0	94	39	10	9	40	1.73
19360593--19360693	20	5.2	18	70	18	53	50	30	1	16	1.57
19360593--19360822	13	18.0	12	65	19	67	48	28	2	20	1.63
19360751--19360810	27	2.3	26	85	8	77	48	30	0	21	1.51
19360773--19360822	12	4.0	12	81	5	55	48	34	0	18	1.48
19360751--19360822	19	3.7	20	78	15	71	48	30	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19360593--19360822	7	36.0	6	68	19	67	48	28	2	20	1.63
19361514--19361563	3	16.7	3	100	0	100	34	0	0	66	0.92
19362122--19362166	20	2.3	19	84	3	54	35	4	0	60	1.17
19362322--19362387	20	3.5	18	76	15	62	45	0	4	50	1.22
19362395--19362426	15	2.1	16	94	5	57	65	6	3	25	1.31
19362424--19362473	17	2.9	18	71	11	52	56	0	2	42	1.11
19362436--19362472	18	2.1	17	90	5	56	62	0	2	35	1.10
19362511--19362589	31	2.5	31	81	0	95	37	6	16	39	1.74
19363041--19363152	39	2.9	39	75	10	97	44	10	7	37	1.67
19365309--19365385	38	2.0	38	87	0	109	28	33	10	27	1.90
19366000--19366034	16	2.2	16	100	0	70	45	11	11	31	1.76
19373446--19373473	13	2.2	13	100	0	56	32	39	7	21	1.80
19380973--19381039	32	2.1	31	83	10	82	46	0	2	50	1.16
19381527--19381559	15	2.3	15	89	5	50	42	0	0	57	0.98
19382466--19382505	19	2.2	19	90	4	64	32	7	5	55	1.50
19386660--19386690	16	1.9	16	93	0	53	19	12	6	61	1.53
19411136--19411178	21	2.0	22	86	4	61	46	2	9	41	1.48
19426957--19427149	97	2.0	98	85	3	264	53	3	27	15	1.58
19433659--19433689	14	2.2	14	100	0	62	41	6	12	38	1.69
19437703--19437738	2	18.0	2	100	0	72	50	0	0	50	1.00
19437913--19437966	21	2.6	20	76	5	54	59	1	5	33	1.31
19439757--19439786	2	15.0	2	92	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19440292--19440328	12	3.0	13	88	7	51	35	0	0	64	0.94
19441035--19441073	18	2.2	18	86	9	53	17	25	38	17	1.92
19442585--19442629	23	2.0	23	86	0	63	42	4	2	51	1.34
19443653--19444072	145	2.9	145	84	3	517	33	11	10	44	1.76
19445756--19445786	3	10.3	3	92	0	53	38	0	29	32	1.57
19447097--19447135	12	3.2	12	77	0	51	76	0	2	20	0.90
19447147--19447238	36	2.5	37	82	1	114	31	6	11	50	1.65
19453259--19453395	42	3.4	41	73	15	108	38	21	8	32	1.82
19453363--19453406	15	2.9	15	93	0	70	27	20	6	45	1.76
19453512--19453556	21	2.0	23	83	8	58	35	31	2	31	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100