genome.fa.s113.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  60  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13892207--13892239	6	5.7	6	96	3	59	72	12	0	15	1.12
13892202--13892246	18	2.5	18	78	7	56	73	8	6	11	1.25
13892271--13892547	59	4.7	58	80	11	269	34	12	8	44	1.73
13892355--13892388	16	2.1	16	100	0	68	41	0	5	52	1.25
13892271--13892549	118	2.3	118	83	8	325	34	12	8	44	1.73
13892565--13892641	35	2.2	34	80	17	88	74	2	7	15	1.16
13893121--13893158	19	2.0	19	89	0	58	36	18	13	31	1.89
13893588--13893725	3	45.7	3	72	18	53	66	4	2	26	1.22
13893699--13893759	6	10.2	6	80	16	56	80	1	0	18	0.80
13895684--13895742	17	3.5	17	76	4	57	61	3	3	32	1.29
13895657--13895742	33	2.7	32	85	3	111	58	4	5	31	1.42
13904376--13904426	20	2.5	20	83	0	57	33	1	5	58	1.33
13906056--13906476	177	2.3	181	78	8	448	45	8	8	38	1.64
13906937--13908310	181	7.7	180	76	9	1084	41	8	8	41	1.66
13907035--13908311	359	3.6	359	77	9	983	41	8	8	41	1.66
13908089--13908657	296	1.9	295	90	1	890	44	8	7	39	1.63
13909079--13915138	362	16.7	360	72	11	2299	42	9	8	40	1.67
13908421--13915138	539	12.4	532	73	10	2120	42	9	8	40	1.66
13909016--13915230	180	34.3	178	73	10	3166	41	9	7	40	1.67
13911032--13915236	539	7.8	537	74	9	2375	41	9	7	40	1.66
13915194--13915331	67	2.1	67	83	2	170	39	10	5	44	1.62
13915278--13916460	181	6.6	181	75	9	696	42	8	7	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13914719--13915871	607	1.9	607	79	7	1311	42	9	7	40	1.65
13915394--13916235	360	2.3	361	81	4	977	42	9	7	41	1.64
13915401--13916469	541	2.0	542	81	4	1284	41	8	7	41	1.64
13916750--13917518	174	4.4	177	77	8	460	40	9	8	41	1.66
13916280--13917191	469	1.9	463	79	9	1010	39	9	8	42	1.68
13917055--13919994	361	8.2	352	71	11	933	40	9	8	40	1.68
13916749--13919967	181	18.1	179	73	9	1835	40	9	8	41	1.68
13919832--13920145	145	2.2	146	83	5	386	42	8	8	40	1.66
13919881--13920145	145	1.8	146	86	4	392	45	8	7	38	1.64
13924390--13924951	296	1.9	296	79	2	644	19	27	23	29	1.98
13925153--13925695	296	1.8	297	80	2	653	18	28	23	30	1.98
13936148--13936212	22	3.0	22	81	0	76	20	40	16	23	1.92
13939535--13939618	44	1.9	44	82	0	105	28	27	22	21	1.99
13943600--13943935	179	1.9	179	80	3	399	15	25	25	33	1.95
13944042--13944419	178	2.1	177	82	3	447	16	28	24	30	1.97
13950416--13950740	179	1.8	179	81	2	402	16	26	23	33	1.95
13957530--13958094	179	3.2	175	74	6	499	18	28	23	30	1.97
13957887--13958947	475	2.2	473	79	4	1075	18	27	23	29	1.98
13963601--13963701	38	2.7	38	98	0	193	12	35	21	29	1.91
13964465--13964517	22	2.4	22	90	0	79	26	37	18	16	1.93
13969827--13970249	179	2.4	179	76	2	440	17	28	22	31	1.97
13970714--13970750	13	2.8	13	91	0	65	13	21	29	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13972706--13972761	23	2.4	23	75	3	58	17	17	28	35	1.93
13974123--13974228	47	2.3	47	88	0	149	21	28	23	26	1.99
13974774--13975557	285	2.7	285	78	7	629	18	26	24	30	1.98
13987787--13987836	22	2.3	22	100	0	100	22	34	20	24	1.97
13997230--13997322	45	2.1	45	85	4	125	23	32	22	21	1.98
13997826--13997865	16	2.5	16	95	0	71	30	27	10	32	1.89
13998373--13998582	116	1.8	116	86	0	303	23	26	22	26	2.00
14000057--14000175	45	2.6	45	80	5	150	24	25	23	26	2.00
14005896--14006526	295	2.1	296	79	4	684	19	26	23	30	1.98
14015307--14016457	573	2.0	571	87	1	1658	19	23	24	32	1.98
14026470--14026506	13	2.8	13	91	0	56	13	27	27	32	1.94
14044452--14044704	119	2.1	119	96	1	463	21	24	23	30	1.99
14045924--14046913	296	3.3	296	80	5	818	17	28	23	29	1.97
14046304--14046930	296	2.1	295	87	1	912	17	29	24	29	1.97
14046304--14047142	296	2.8	296	82	2	837	18	29	23	28	1.98
14053048--14053090	21	2.0	21	86	8	61	11	25	32	30	1.91
14055574--14056163	295	2.0	295	80	4	670	20	28	22	28	1.98
14055361--14057638	296	7.7	294	74	6	916	19	27	23	29	1.98
14056823--14058072	591	2.1	591	80	6	1413	19	27	23	29	1.98
14056033--14057760	295	5.8	294	75	6	940	20	27	23	29	1.99
14056723--14058030	296	4.4	291	74	6	900	20	27	23	29	1.99
14063152--14063758	296	2.1	296	81	2	700	19	26	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14063127--14064995	700	2.7	696	76	6	1769	20	27	21	30	1.98
14068209--14068991	296	2.6	295	77	5	763	21	28	20	28	1.98
14071927--14072020	45	2.1	45	85	0	125	23	35	22	19	1.96
14076285--14077319	295	3.5	294	76	4	765	19	27	23	29	1.98
14078683--14078732	26	1.9	26	84	8	66	22	10	8	60	1.55
14080243--14081552	296	4.4	295	74	5	932	21	27	22	29	1.99
14086205--14086823	296	2.1	295	79	4	647	21	29	22	27	1.99
14086331--14086995	296	2.2	294	77	5	642	20	28	22	28	1.98
14090804--14091889	295	3.7	290	75	8	810	19	29	22	28	1.98
14092258--14092506	129	1.9	129	90	3	394	23	24	24	27	2.00
14096360--14096935	296	1.9	297	79	3	640	18	24	26	30	1.98
14103151--14103201	26	2.0	26	88	0	75	31	5	7	54	1.53
14107362--14107416	22	2.5	22	93	0	101	21	40	20	18	1.92
14117874--14118412	295	1.8	294	79	2	616	21	28	21	28	1.99
14122479--14122514	13	2.8	13	86	0	54	13	19	25	41	1.88
14124177--14124249	22	3.3	22	86	0	101	26	41	15	17	1.89
14130730--14130781	22	2.4	22	83	0	68	25	38	17	19	1.93
14145737--14146876	406	2.8	406	98	0	2217	29	19	27	23	1.98
14157314--14157954	294	2.2	298	78	6	662	20	28	22	28	1.99
14157455--14158358	282	3.1	294	73	9	623	19	29	22	28	1.98
14158212--14158693	255	1.9	255	78	4	533	18	29	23	28	1.98
14170845--14170932	45	2.0	45	83	0	113	22	30	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14170850--14170949	45	2.2	45	81	0	110	24	30	24	22	1.99
14176464--14176514	22	2.3	22	89	0	75	27	39	15	17	1.90
14180473--14180908	224	1.9	224	80	3	493	21	28	21	28	1.99
14183694--14184473	295	2.6	293	76	5	737	19	26	23	29	1.98
14189799--14189847	22	2.2	22	88	0	71	30	40	12	16	1.85
14209949--14210547	293	2.0	294	79	3	643	20	27	20	30	1.98
14212439--14212491	22	2.4	22	100	0	106	22	15	28	33	1.94
14227368--14227475	45	2.4	44	84	6	128	25	33	18	22	1.97
14228928--14228978	26	1.9	27	88	4	77	49	9	7	33	1.65
14241014--14241551	295	1.8	295	79	6	624	18	26	24	30	1.98
14251192--14251454	138	1.9	137	91	0	427	21	27	22	28	1.99
14254556--14254587	13	2.5	13	94	0	55	12	31	21	34	1.91
14254681--14255381	295	2.4	293	76	5	694	19	28	21	30	1.98
14257018--14257121	47	2.2	47	92	0	172	24	25	22	27	1.99
14267374--14268014	296	2.2	296	78	5	661	19	26	24	30	1.98
14270922--14271046	45	2.8	44	79	6	124	24	32	20	22	1.98
14273416--14273967	296	1.9	296	80	5	650	20	29	22	27	1.98
14278833--14279473	296	2.2	296	78	6	638	19	26	24	29	1.98
14284797--14285456	297	2.2	293	78	6	640	20	28	23	28	1.99
14288188--14288277	45	2.0	45	88	0	135	25	32	20	22	1.98
14289378--14289722	178	1.9	178	81	2	406	16	32	22	28	1.96
14295693--14295803	45	2.5	45	82	2	116	23	18	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14297901--14299267	296	4.6	295	74	6	885	30	23	26	20	1.98
14300514--14300739	62	3.7	61	78	8	156	35	13	15	34	1.87
14300545--14300739	62	3.2	60	79	13	209	36	13	15	33	1.87
14301145--14301348	63	3.3	61	73	16	177	38	15	12	33	1.85
14301145--14301320	62	2.8	63	75	17	170	38	14	14	32	1.86
14300261--14301353	601	1.8	598	84	3	1333	36	15	13	34	1.87
14303723--14303801	41	1.9	41	84	0	104	34	15	11	39	1.83
14309007--14309099	45	2.1	45	83	0	114	26	23	26	22	2.00
14311175--14312007	296	2.8	293	76	6	804	29	21	28	21	1.98
14315564--14318288	296	9.2	292	73	8	1426	29	23	28	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100