genome.fa.s113.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  98  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19453550--19453640	44	2.1	44	91	0	146	39	21	9	28	1.86
19453676--19453765	41	2.2	41	81	0	99	33	20	12	34	1.89
19453755--19453815	24	2.5	24	86	7	79	24	11	19	44	1.84
19453928--19453962	18	1.9	18	94	0	61	28	14	8	48	1.73
19454205--19454333	22	5.8	22	75	0	105	35	17	20	26	1.95
19454383--19454951	35	16.2	35	74	11	360	13	10	15	59	1.61
19454379--19454951	72	8.2	71	74	11	349	13	10	15	59	1.61
19454637--19454756	64	1.9	64	87	6	181	13	8	16	61	1.55
19454636--19454769	64	2.1	64	80	5	155	13	9	16	60	1.58
19454555--19454951	106	3.8	105	77	12	293	13	11	15	59	1.61
19456942--19456972	15	2.1	15	100	0	62	6	25	6	61	1.45
19457399--19457441	21	2.1	20	91	4	68	11	4	18	65	1.42
19458317--19458356	19	2.2	19	86	8	57	30	5	12	52	1.60
19461790--19461828	18	2.4	16	87	12	53	76	0	17	5	0.96
19461790--19461833	17	2.5	18	88	3	63	77	0	18	4	0.94
19461802--19461870	14	5.0	13	75	13	59	81	2	14	1	0.88
19466049--19466304	123	2.1	124	90	0	406	49	14	9	26	1.74
19471752--19471792	19	2.1	20	86	4	57	29	4	7	58	1.46
19472086--19472209	64	1.9	65	85	1	169	34	15	14	35	1.88
19472446--19472827	63	6.0	62	73	8	261	40	12	12	34	1.81
19472680--19472832	64	2.4	64	83	0	180	44	12	8	34	1.73
19472952--19473234	65	4.4	63	77	7	257	35	12	13	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19472967--19473234	63	4.2	63	76	9	233	36	13	13	37	1.83
19473017--19473249	125	1.9	125	80	8	276	35	13	13	37	1.84
19473385--19473425	20	2.0	20	100	0	82	19	43	0	36	1.51
19475898--19475937	19	2.2	18	86	4	53	77	0	7	15	0.98
19476300--19476331	3	10.7	3	100	0	64	65	0	0	34	0.93
19476330--19476392	3	21.0	3	87	6	65	25	0	7	66	1.18
19476328--19476368	21	2.0	21	100	0	82	34	0	0	65	0.93
19476360--19476401	18	2.3	18	83	0	57	21	0	14	64	1.29
19478364--19478398	18	2.0	18	88	5	54	20	8	0	71	1.11
19479541--19479597	27	2.1	27	80	6	62	61	5	10	22	1.48
19492513--19492555	16	2.7	16	100	0	86	46	6	9	37	1.63
19496049--19496087	19	2.1	18	85	4	51	76	5	15	2	1.06
19500402--19500471	22	3.1	22	72	12	61	80	2	15	1	0.91
19500844--19500891	23	2.1	23	100	0	96	39	4	12	43	1.62
19501664--19501720	25	2.3	25	79	11	64	38	1	3	56	1.27
19503185--19503220	17	2.1	18	94	5	65	58	5	11	25	1.54
19503185--19503231	17	2.7	17	83	3	58	55	4	12	27	1.56
19504802--19504944	75	1.9	75	83	0	187	30	11	28	28	1.92
19505625--19505653	14	2.1	14	100	0	58	51	20	13	13	1.75
19509138--19509167	3	10.0	3	92	0	51	30	3	0	66	1.07
19509634--19509681	20	2.4	20	82	0	60	25	4	12	58	1.52
19509976--19510059	13	6.4	13	74	6	53	15	1	4	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19509970--19510029	6	9.8	6	79	16	61	11	3	3	81	0.93
19509969--19510030	19	3.4	17	78	12	61	11	3	3	82	0.91
19509969--19510061	18	5.1	17	73	12	69	15	2	4	78	1.00
19510138--19510164	14	1.9	14	100	0	54	77	0	0	22	0.76
19522559--19522630	33	2.2	33	84	0	90	25	15	19	40	1.90
19522591--19522781	79	2.4	80	89	0	276	23	14	21	40	1.90
19522591--19522787	40	4.9	40	83	1	252	22	14	21	42	1.88
19522882--19522946	33	2.0	33	96	0	121	24	12	21	41	1.87
19522881--19523157	39	7.3	38	83	6	307	25	8	21	43	1.81
19522915--19523157	77	3.1	76	84	7	303	25	8	21	44	1.80
19523340--19523392	3	18.0	3	92	3	90	35	0	0	64	0.94
19523792--19523820	10	2.9	10	100	0	58	37	0	0	62	0.96
19524244--19524276	12	2.8	12	82	17	50	18	0	9	72	1.10
19524291--19524336	3	16.0	3	91	8	78	32	0	0	67	0.91
19526310--19526414	52	2.0	52	85	3	140	45	6	16	31	1.73
19531389--19531443	10	5.8	10	78	22	57	29	0	0	70	0.87
19531398--19531442	9	5.2	9	77	20	51	28	0	0	71	0.87
19531392--19531441	25	1.9	27	92	8	86	28	0	0	72	0.86
19536069--19536111	19	2.2	19	87	4	59	41	9	2	46	1.48
19544575--19544629	23	2.3	23	82	14	60	74	0	18	7	1.04
19546086--19546167	34	2.3	36	83	4	96	39	7	13	40	1.72
19546106--19546211	54	2.0	54	83	7	135	38	8	11	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19546106--19546197	18	5.1	18	79	12	100	35	6	11	45	1.67
19546252--19546334	17	4.8	17	76	4	67	31	10	13	44	1.78
19546251--19546337	35	2.5	35	80	10	97	33	11	12	42	1.79
19546847--19546916	21	3.2	21	68	11	52	45	11	5	37	1.64
19548052--19548084	15	2.2	15	94	0	57	0	9	0	90	0.44
19549841--19549873	16	2.0	17	88	5	50	54	0	3	42	1.15
19549958--19549997	19	2.1	19	86	9	55	52	0	0	47	1.00
19552727--19552774	21	2.2	22	81	7	53	8	14	8	68	1.37
19553341--19553451	20	5.7	19	76	15	68	23	3	0	72	0.99
19553341--19553451	25	4.3	27	68	19	83	23	3	0	72	0.99
19553351--19553456	33	3.2	33	73	17	85	25	2	0	71	0.99
19553381--19553425	12	3.9	12	82	8	58	28	4	0	66	1.11
19553349--19553452	7	15.0	7	73	16	67	24	2	0	73	0.97
19553783--19553856	32	2.3	31	82	11	87	10	20	1	67	1.28
19556676--19556701	9	2.9	9	100	0	52	11	0	0	88	0.52
19558256--19558300	13	3.6	12	80	11	54	75	0	8	15	1.03
19558256--19558304	6	7.8	6	78	17	55	75	0	8	16	1.03
19558257--19558294	20	1.9	20	89	10	60	73	0	10	15	1.09
19558970--19559001	2	16.0	2	100	0	64	0	50	0	50	1.00
19560979--19561029	2	25.5	2	100	0	102	50	0	0	49	1.00
19561894--19561929	16	2.2	16	90	0	54	27	8	0	63	1.23
19561944--19561987	6	7.0	6	80	10	52	75	2	0	22	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19561944--19561987	19	2.3	19	80	7	54	75	2	0	22	0.92
19561944--19562000	24	2.3	24	80	16	64	71	1	3	22	1.10
19562157--19562188	13	2.4	13	94	5	55	65	0	3	31	1.08
19562201--19562260	17	3.6	16	73	10	50	73	0	3	23	0.98
19562158--19562245	37	2.3	40	77	16	96	67	0	3	29	1.07
19562201--19562267	35	2.0	34	85	8	93	68	0	2	28	1.04
19562451--19562530	19	4.1	19	71	7	63	42	22	15	20	1.88
19562496--19562538	19	2.3	18	88	8	59	41	23	13	20	1.88
19562458--19562538	38	2.1	38	84	4	101	39	23	17	19	1.92
19562624--19563193	281	2.0	283	86	2	808	41	10	10	37	1.74
19563757--19563802	24	1.9	24	83	16	60	36	10	8	43	1.71
19564630--19564741	41	2.7	41	82	12	122	21	0	33	45	1.52
19564685--19564746	14	4.5	14	75	4	54	22	0	32	45	1.53
19566774--19566817	20	2.1	21	84	12	56	22	9	15	52	1.71
19567558--19567661	3	36.3	3	73	12	67	26	2	6	63	1.34
19568585--19568686	13	7.8	13	69	21	52	24	1	4	68	1.19
19571979--19572308	165	2.0	165	94	0	579	40	11	22	26	1.87
19579029--19579176	76	1.9	76	88	0	224	51	10	10	27	1.69
19581895--19582291	119	3.4	115	83	7	424	36	12	8	42	1.72
19581895--19582291	118	3.4	114	82	9	424	36	12	8	42	1.72
19581895--19582291	58	6.7	58	80	7	417	36	12	8	42	1.72
19581892--19582291	177	2.2	177	87	5	583	36	12	8	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19582294--19582346	6	8.3	6	80	19	63	81	0	3	15	0.83
19581982--19582342	176	2.0	175	80	7	399	42	10	7	39	1.68
19583217--19583309	21	4.6	20	75	14	84	58	4	5	32	1.40
19583352--19583509	3	52.7	3	72	16	80	67	0	3	28	1.13
19583384--19583516	26	5.0	27	73	17	102	71	0	2	25	1.03
19583398--19583510	47	2.5	45	81	16	142	72	0	1	24	1.00
19583374--19583500	70	1.9	69	82	11	165	69	0	2	27	1.06
19584079--19584180	44	2.3	43	85	5	150	49	14	18	17	1.80
19585507--19585598	3	31.7	3	69	6	55	30	3	6	59	1.38
19585511--19585549	20	2.0	20	89	0	60	28	2	2	66	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100