genome.fa.s113.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  74  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16181700--16181752	26	2.0	26	92	0	88	28	28	18	24	1.98
16181733--16182125	159	2.5	158	79	4	432	21	24	30	23	1.99
16182077--16182166	46	2.0	46	90	0	144	25	21	42	11	1.85
16182248--16182326	26	3.0	26	90	3	124	27	24	20	27	1.99
16182725--16182777	26	2.0	26	85	7	72	26	20	22	30	1.98
16182939--16182989	26	2.0	26	88	7	77	29	23	17	29	1.97
16183846--16183898	26	2.0	26	85	0	70	24	16	20	37	1.93
16184372--16184423	26	2.0	26	92	7	88	28	19	21	30	1.97
16185631--16185930	158	1.9	158	81	2	361	23	32	27	16	1.96
16186163--16186571	159	2.6	159	76	4	351	25	28	26	20	1.99
16187523--16187575	26	2.0	26	88	0	79	24	18	26	30	1.98
16187865--16187917	26	2.0	26	88	0	79	26	18	24	30	1.98
16188076--16188435	184	2.0	183	82	5	440	24	27	25	22	2.00
16188732--16188782	26	2.0	26	96	0	93	29	19	23	27	1.98
16190688--16190740	26	2.0	26	92	7	90	28	22	22	26	1.99
16191187--16191239	26	2.0	26	89	7	81	26	18	26	28	1.98
16191397--16191897	158	3.2	158	76	4	499	22	28	27	21	1.99
16191374--16191823	159	2.8	158	76	3	492	23	28	28	19	1.98
16191872--16191923	25	2.0	26	92	3	88	25	21	26	26	1.99
16192617--16192975	157	2.3	157	78	8	370	24	28	25	22	1.99
16193460--16193512	26	2.0	26	92	0	88	26	20	26	26	1.99
16192777--16193932	355	3.2	354	78	9	1015	24	28	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16193853--16194248	159	2.5	159	73	7	363	23	28	27	20	1.99
16194322--16194372	26	2.0	26	88	7	77	27	17	27	27	1.98
16194701--16194753	26	2.0	26	92	7	90	28	20	24	26	1.99
16195376--16196067	158	4.4	156	76	5	453	25	30	26	18	1.98
16195217--16196068	317	2.6	317	80	5	865	25	31	25	17	1.97
16196869--16197371	159	3.2	159	75	6	392	24	31	25	19	1.98
16197345--16197397	26	2.0	26	88	0	79	26	18	26	28	1.98
16197837--16198287	158	2.8	157	71	5	386	25	30	25	18	1.98
16197517--16198373	317	2.7	317	82	2	1013	23	29	25	20	1.99
16198347--16198398	26	2.0	26	84	0	68	25	13	26	34	1.93
16199057--16199109	26	2.0	26	85	7	72	30	18	22	28	1.98
16199055--16199397	183	1.9	184	87	4	505	25	27	27	19	1.99
16199802--16199854	26	2.0	26	89	7	81	28	20	20	30	1.98
16200302--16200354	26	2.0	26	85	0	70	28	15	24	32	1.95
16202060--16202562	159	3.2	157	77	5	476	24	29	26	20	1.99
16202928--16203290	158	2.3	157	78	9	373	23	27	26	22	1.99
16203404--16203456	26	2.0	26	92	0	88	24	18	28	28	1.98
16210104--16210442	175	1.9	175	80	4	398	19	29	30	20	1.97
16210539--16210571	17	1.9	17	93	0	57	30	18	27	24	1.98
16210590--16211126	158	3.4	157	74	6	438	24	30	24	19	1.98
16211841--16211893	26	2.0	26	82	7	63	28	22	24	24	2.00
16212184--16212236	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16212402--16212471	26	2.7	26	95	0	122	31	20	22	25	1.98
16213323--16213375	26	2.0	26	89	7	81	30	18	22	28	1.98
16213667--16213719	26	2.0	26	92	0	88	28	22	22	26	1.99
16213322--16214103	343	2.3	343	80	3	876	24	28	25	21	1.99
16214208--16214260	26	2.0	26	92	7	90	28	20	24	26	1.99
16214406--16214457	26	2.0	26	92	7	88	28	15	25	30	1.96
16214209--16214563	197	1.8	196	89	1	559	24	28	25	21	1.99
16214431--16214932	158	3.2	157	75	8	473	23	28	27	20	1.99
16214906--16214958	26	2.0	26	88	0	79	28	20	24	26	1.99
16215108--16215160	26	2.0	26	85	7	72	28	16	24	30	1.97
16214121--16215685	703	2.2	696	81	6	1780	23	28	26	21	1.99
16215609--16215661	26	2.0	26	88	0	79	24	20	28	26	1.99
16216239--16216263	11	2.3	11	100	0	50	16	32	24	28	1.96
16216893--16216945	26	2.0	26	89	7	81	30	20	22	26	1.98
16217392--16217442	26	2.0	26	88	0	75	27	17	25	29	1.98
16217539--16217598	21	2.9	21	92	0	93	8	33	23	35	1.85
16217592--16218209	185	3.3	185	74	9	449	23	26	26	23	2.00
16218030--16218401	158	2.3	158	79	5	401	23	29	26	19	1.99
16218030--16218429	159	2.5	158	78	3	419	24	29	27	19	1.98
16218506--16218558	26	2.0	26	92	0	88	24	18	28	28	1.98
16219275--16219544	143	1.9	143	79	5	305	21	32	25	19	1.97
16219554--16219603	26	1.9	26	95	0	91	28	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16220277--16220329	26	2.0	26	89	7	81	32	18	20	28	1.97
16220461--16220513	26	2.0	26	89	7	81	28	20	24	26	1.99
16220276--16220669	184	2.2	182	80	4	418	27	26	24	21	2.00
16220794--16221020	117	1.9	117	86	0	319	26	25	31	16	1.96
16221273--16221767	159	3.1	157	76	3	384	21	28	28	21	1.99
16222969--16223018	26	1.9	26	95	0	91	26	16	28	30	1.96
16222949--16223314	197	1.9	197	84	2	502	23	26	27	22	1.99
16223191--16223653	159	2.9	156	75	7	378	23	30	26	19	1.98
16223668--16223720	26	2.0	26	92	0	88	24	20	26	28	1.99
16224701--16225065	197	1.9	197	81	4	450	23	24	27	24	2.00
16225408--16225460	26	2.0	26	92	0	88	22	20	28	28	1.99
16226170--16226222	26	2.0	26	88	0	79	30	20	22	26	1.98
16226670--16226722	26	2.0	26	92	0	88	26	20	26	26	1.99
16227393--16227445	26	2.0	26	89	7	81	30	20	24	24	1.99
16227736--16227788	26	2.0	26	89	7	81	26	18	26	28	1.98
16230368--16230429	24	2.6	24	92	0	97	25	20	29	24	1.99
16239778--16239830	26	2.0	26	88	0	79	26	20	24	28	1.99
16240100--16240130	15	2.1	15	100	0	62	29	32	12	25	1.93
16240575--16240627	26	2.0	26	100	0	106	22	20	30	26	1.98
16240923--16241234	158	2.0	159	82	3	378	25	31	25	18	1.98
16241432--16241485	26	2.1	26	86	6	74	31	18	29	20	1.96
16241819--16241871	26	2.0	26	89	7	81	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16242346--16242398	26	2.0	26	85	7	72	32	20	20	26	1.98
16243232--16243284	26	2.0	26	89	7	81	30	18	22	28	1.98
16248416--16248468	26	2.0	26	88	0	79	26	22	28	22	1.99
16249139--16249191	26	2.0	26	89	7	81	32	20	22	24	1.98
16249164--16249631	158	3.0	158	79	5	532	23	32	27	17	1.96
16249640--16249692	26	2.0	26	100	0	106	26	20	26	26	1.99
16250145--16250621	156	3.0	158	75	8	452	22	28	28	19	1.98
16257658--16257710	26	2.0	26	89	7	81	32	20	22	24	1.98
16257683--16258184	159	3.2	158	81	3	539	23	30	26	19	1.98
16258158--16258210	26	2.0	26	88	0	79	28	20	24	26	1.99
16258000--16258502	184	2.7	182	81	2	567	23	29	26	20	1.99
16258820--16258873	26	2.1	26	85	0	72	27	18	25	27	1.98
16259538--16259590	26	2.0	26	89	7	81	32	20	22	24	1.98
16259563--16260064	159	3.2	158	81	3	539	23	30	26	19	1.98
16260038--16260090	26	2.0	26	88	0	79	28	20	24	26	1.99
16259880--16260382	184	2.7	182	81	2	567	23	29	26	20	1.99
16260698--16260750	26	2.0	26	85	0	70	26	16	26	30	1.97
16261760--16261812	26	2.0	26	92	0	88	24	16	26	32	1.97
16261969--16262021	26	2.0	26	96	0	97	24	16	28	30	1.97
16262660--16262710	26	2.0	26	88	7	77	29	19	23	27	1.98
16263325--16263377	26	2.0	26	92	0	88	28	18	24	28	1.98
16264255--16264305	26	2.0	26	88	7	77	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16264806--16264858	26	2.0	26	88	0	79	24	20	28	26	1.99
16265527--16265577	26	2.0	26	88	7	77	31	17	21	29	1.96
16265553--16265895	158	2.2	158	81	5	406	22	29	27	19	1.98
16266053--16266105	26	2.0	26	88	0	79	26	13	28	32	1.93
16265733--16266163	184	2.3	183	83	2	531	23	26	28	22	1.99
16267119--16267171	26	2.0	26	100	0	106	22	20	30	26	1.98
16268523--16268681	84	1.9	82	82	5	194	16	26	34	22	1.95
16269750--16269811	24	2.6	24	86	0	88	24	19	30	25	1.98
16272510--16273008	159	3.1	155	73	8	441	22	30	28	19	1.98
16273055--16273107	26	2.0	26	85	0	70	28	18	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100