genome.fa.s113.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  67  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15671192--15672007	159	5.1	159	76	4	608	19	26	29	24	1.99
15671186--15671937	318	2.4	317	79	4	775	19	26	29	24	1.98
15672217--15672574	159	2.3	159	83	4	438	21	24	30	23	1.99
15672653--15672705	26	2.0	26	89	7	81	28	24	18	28	1.98
15672813--15673550	343	2.2	343	83	2	903	20	28	28	22	1.99
15673184--15673233	26	1.9	26	87	0	73	24	28	20	28	1.99
15673207--15673792	157	3.7	158	76	4	484	19	25	31	23	1.98
15673855--15673917	26	2.4	26	100	0	126	26	28	20	23	1.99
15674582--15674648	26	2.6	26	100	0	134	26	17	20	34	1.96
15675056--15675108	26	2.0	26	89	7	81	28	26	18	26	1.98
15675082--15675614	158	3.4	157	74	6	482	19	26	30	23	1.98
15675726--15675777	26	2.0	26	84	0	68	28	28	17	25	1.97
15675891--15676256	159	2.3	160	78	6	393	22	24	29	24	1.99
15676228--15676280	26	2.0	26	85	7	72	28	22	18	30	1.98
15676077--15676439	184	2.0	185	82	2	453	22	25	27	23	2.00
15677045--15677094	26	1.9	26	92	8	84	30	28	14	28	1.95
15677280--15677535	135	1.9	135	83	3	336	17	26	29	25	1.98
15677518--15677570	26	2.0	26	92	7	90	26	24	20	28	1.99
15678792--15678844	26	2.0	26	82	7	63	28	22	18	30	1.98
15679135--15679187	26	2.0	26	89	7	81	26	20	20	32	1.98
15680228--15680280	26	2.0	26	89	7	81	28	24	18	28	1.98
15680425--15680477	26	2.0	26	92	7	90	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15680927--15680979	26	2.0	26	89	7	81	26	20	20	32	1.98
15679700--15681396	699	2.4	697	80	3	1887	21	25	28	23	1.99
15682753--15683253	159	3.2	157	75	8	487	20	26	29	23	1.99
15683227--15683279	26	2.0	26	85	7	72	24	22	22	30	1.99
15684464--15684513	26	1.9	26	87	0	73	26	30	20	24	1.98
15684952--15685003	26	2.0	26	85	14	72	30	25	15	28	1.96
15685149--15685199	26	2.0	26	92	7	86	27	27	15	29	1.96
15691771--15691823	26	2.0	26	88	0	79	28	26	18	26	1.98
15692115--15692166	26	2.0	26	85	7	70	30	21	19	28	1.97
15692804--15692856	26	2.0	26	88	0	79	28	26	18	26	1.98
15693306--15693356	26	2.0	26	88	7	77	29	19	17	33	1.95
15693501--15693552	26	2.0	26	92	0	86	28	28	17	25	1.97
15693845--15693895	26	2.0	26	88	7	77	29	21	17	31	1.96
15693302--15694446	550	2.1	539	80	5	1261	21	26	27	23	1.99
15694393--15694445	26	2.0	26	92	7	90	26	24	20	28	1.99
15695288--15695339	26	2.0	26	92	7	88	30	21	19	28	1.97
15695643--15695693	26	2.0	26	96	0	93	25	21	21	31	1.98
15695222--15695863	355	1.8	354	82	4	837	21	26	28	23	1.99
15695837--15695889	26	2.0	26	89	7	81	28	24	18	28	1.98
15696159--15696211	27	2.0	27	88	0	79	28	24	18	28	1.98
15696186--15696685	157	3.2	153	77	7	482	20	27	29	23	1.99
15696855--15696924	26	2.7	26	93	0	122	25	30	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15697164--15697215	26	2.0	26	85	7	70	30	28	17	23	1.97
15697507--15697559	26	2.0	26	92	0	88	26	26	20	26	1.99
15697139--15697878	343	2.2	342	83	5	897	22	27	27	23	1.99
15697984--15698036	26	2.0	26	88	0	79	24	24	20	30	1.99
15699001--15699053	26	2.0	26	86	13	74	32	26	16	24	1.97
15699503--15699555	26	2.0	26	89	7	81	32	24	16	26	1.97
15699698--15699748	26	2.0	26	88	0	75	27	27	15	29	1.96
15700362--15700414	26	2.0	26	92	0	88	32	28	15	24	1.95
15700115--15700573	191	2.4	190	78	5	477	20	27	27	24	1.99
15700704--15700756	26	2.0	26	92	7	90	26	22	20	30	1.98
15701436--15701488	26	2.0	26	89	7	81	26	24	20	28	1.99
15701938--15701990	26	2.0	26	89	7	81	28	24	18	28	1.98
15702477--15702528	25	2.0	26	96	3	97	26	23	21	28	1.99
15702603--15702630	11	2.5	11	100	0	56	17	17	39	25	1.92
15703207--15703259	26	2.0	26	82	13	65	28	28	16	26	1.97
15703668--15703720	26	2.0	26	92	0	88	28	28	18	24	1.98
15703761--15704195	159	2.7	159	86	1	597	17	28	31	22	1.97
15704170--15704222	26	2.0	26	92	7	90	26	24	20	28	1.99
15705060--15705113	26	2.0	27	89	3	83	25	25	20	27	1.99
15705147--15705589	159	2.8	159	81	2	469	19	26	29	24	1.98
15705564--15705616	26	2.0	26	92	7	90	26	24	20	28	1.99
15706911--15706963	26	2.0	26	85	0	70	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15708116--15708409	158	1.9	159	81	2	358	21	26	29	22	1.99
15708602--15708654	26	2.0	26	85	7	72	26	24	20	28	1.99
15709826--15709878	26	2.0	26	89	7	81	28	24	18	28	1.98
15708881--15710574	881	1.9	880	90	0	2728	26	23	23	27	2.00
15710548--15710600	26	2.0	26	85	0	70	30	26	16	26	1.97
15710891--15710943	26	2.0	26	85	7	72	28	22	20	28	1.99
15711134--15711626	157	3.1	158	75	7	455	18	26	30	24	1.98
15711600--15711652	26	2.0	26	82	7	63	28	22	16	32	1.96
15711443--15711807	184	2.0	183	86	1	516	19	27	29	23	1.98
15715753--15715801	23	2.1	23	100	0	98	34	4	30	30	1.76
15718341--15718393	26	2.0	26	85	0	70	30	30	15	24	1.95
15718367--15718869	159	3.2	156	73	10	455	21	25	28	24	1.99
15719052--15719104	26	2.0	26	96	0	97	26	20	20	32	1.98
15720620--15720671	26	2.0	26	88	7	79	28	25	17	28	1.97
15720817--15720869	26	2.0	26	88	0	79	30	24	16	28	1.97
15720584--15720955	197	1.9	197	84	3	498	20	27	27	24	1.99
15720916--15721504	159	3.7	159	77	5	487	18	28	29	23	1.98
15721477--15721529	26	2.0	26	85	7	72	28	22	18	30	1.98
15721687--15721739	26	2.0	26	92	0	88	30	26	16	26	1.97
15720273--15722057	870	2.1	855	82	5	2164	20	27	28	23	1.99
15722030--15722082	26	2.0	26	89	7	81	28	22	18	30	1.98
15722742--15722794	26	2.0	26	88	0	79	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15722882--15723259	158	2.4	158	80	7	426	17	26	30	25	1.97
15723441--15723493	26	2.0	26	96	0	97	26	28	20	24	1.99
15725106--15725159	26	2.1	26	92	0	90	24	25	22	27	2.00
15725132--15725504	159	2.4	157	77	5	392	20	27	31	21	1.98
15725966--15726018	26	2.0	26	92	7	90	26	24	20	28	1.99
15727031--15727083	26	2.0	26	85	7	72	26	24	20	28	1.99
15727766--15727833	26	2.6	26	85	0	82	11	38	17	32	1.86
15728034--15728086	26	2.0	26	92	7	90	26	20	20	32	1.98
15728781--15729286	159	3.2	160	75	6	384	19	27	30	22	1.98
15729258--15729310	26	2.0	26	89	7	81	26	24	20	28	1.99
15728737--15729840	502	2.2	501	81	3	1270	21	25	28	23	1.99
15729284--15729669	159	2.4	156	78	11	424	23	25	28	22	1.99
15729760--15729811	26	2.0	26	92	7	88	26	25	19	28	1.98
15731017--15731069	26	2.0	26	88	0	79	28	26	18	26	1.98
15731715--15731767	26	2.0	26	92	0	88	26	26	20	26	1.99
15731426--15731799	196	1.9	197	84	2	502	22	25	26	24	2.00
15732249--15732303	26	2.1	27	89	3	85	23	29	18	29	1.98
15731456--15732614	539	2.1	538	81	2	1344	21	26	27	24	1.99
15732276--15732773	159	3.1	159	73	6	348	20	26	29	23	1.99
15732756--15732808	26	2.0	26	85	7	72	28	22	18	30	1.98
15732198--15733138	515	1.8	502	80	6	1097	21	26	28	24	1.99
15732713--15733390	343	1.9	350	81	7	806	21	25	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15735323--15735375	26	2.0	26	85	7	72	28	22	18	30	1.98
15736384--15736834	159	2.8	157	75	7	433	23	27	26	22	1.99
15736807--15736858	26	2.0	26	88	7	79	28	25	17	28	1.97
15737346--15737396	26	2.0	26	81	14	61	31	27	13	27	1.94
15737530--15737582	26	2.0	26	89	7	81	26	24	20	28	1.99
15738440--15738492	26	2.0	26	85	7	72	30	24	16	28	1.97
15738637--15738689	26	2.0	26	89	7	81	24	26	20	28	1.99
15740004--15740056	26	2.0	26	89	7	81	28	22	18	30	1.98
15740200--15740252	26	2.0	26	96	0	97	26	24	20	28	1.99
15740226--15741086	159	5.4	159	74	3	615	20	26	30	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100