genome.fa.s113.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  37  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9862734--9862808	30	2.5	30	86	4	98	46	2	8	42	1.47
9863045--9863183	49	2.8	49	76	4	136	46	9	16	27	1.77
9863307--9863394	45	1.9	46	90	6	144	40	5	22	30	1.77
9868544--9868585	18	2.3	18	84	8	50	14	16	2	66	1.35
9868913--9868954	22	1.9	22	85	0	57	16	4	16	61	1.50
9870998--9871165	87	1.9	87	91	0	273	32	20	5	41	1.76
9873660--9873721	21	3.1	20	71	15	56	12	11	1	74	1.15
9880104--9880128	2	12.5	2	100	0	50	48	0	0	52	1.00
9885878--9885917	16	2.6	15	84	7	53	80	0	17	2	0.83
9885874--9885917	15	2.9	15	81	18	56	79	0	18	2	0.83
9885883--9885956	15	4.6	16	76	15	64	74	0	18	6	1.04
9885865--9885956	15	5.9	15	74	19	55	72	0	19	7	1.08
9885910--9885951	18	2.5	17	82	17	52	69	0	19	11	1.19
9887672--9887823	41	3.7	41	90	0	232	23	11	21	44	1.84
9888338--9888371	14	2.4	14	95	5	59	44	0	2	52	1.16
9891921--9891952	16	2.0	16	93	0	55	28	6	6	59	1.46
9892855--9892920	24	2.8	24	81	6	73	46	1	1	50	1.20
9900318--9900368	22	2.3	21	80	16	59	35	1	1	60	1.19
9901418--9901460	21	2.0	21	100	0	86	48	0	9	41	1.35
9901422--9901468	21	2.2	21	92	0	76	55	0	8	36	1.31
9904335--9904368	16	2.1	16	94	0	59	17	2	5	73	1.16
9904618--9904684	31	2.2	31	84	10	84	59	5	28	5	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9905353--9905407	14	4.2	14	78	19	57	14	0	9	76	1.02
9905365--9905407	12	3.5	12	78	15	52	13	0	6	79	0.93
9905608--9905633	13	2.0	13	100	0	52	84	0	0	15	0.62
9905818--9905980	53	3.3	49	80	13	201	51	7	11	29	1.65
9905813--9906004	98	2.0	97	83	5	244	50	6	13	30	1.67
9910081--9910191	8	12.2	9	73	21	56	75	0	18	4	1.02
9910081--9910149	9	8.0	8	85	10	75	84	1	14	0	0.70
9910082--9910155	10	7.9	10	80	10	68	83	1	13	1	0.77
9910082--9910155	27	2.7	27	82	4	85	83	1	13	1	0.77
9910082--9910155	36	2.0	36	86	2	103	83	1	13	1	0.77
9910884--9911056	67	2.7	62	82	8	186	36	10	22	30	1.88
9911455--9911609	46	3.4	46	76	7	138	39	8	12	39	1.74
9911477--9911749	71	3.9	71	78	10	238	39	7	13	39	1.74
9911455--9911680	117	1.9	117	90	0	362	39	8	12	39	1.74
9911548--9911755	46	4.5	46	91	0	326	37	7	15	38	1.77
9912169--9912338	40	4.2	40	87	3	196	22	8	23	45	1.79
9912169--9912338	81	2.1	81	84	3	216	22	8	23	45	1.79
9913050--9913092	20	2.2	20	82	0	50	30	6	18	44	1.76
9913591--9913631	12	3.3	12	83	6	55	17	0	9	73	1.09
9913578--9913633	13	4.4	12	78	10	58	14	0	10	75	1.06
9917642--9917672	15	2.1	15	93	0	53	41	9	12	35	1.76
9918479--9918512	16	2.1	16	88	5	50	47	17	17	17	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9918972--9919016	24	1.9	23	86	4	63	53	2	2	42	1.25
9918984--9919062	30	2.6	30	83	0	104	54	3	5	36	1.41
9919316--9919605	49	5.8	50	72	11	150	47	8	15	27	1.74
9919368--9919544	98	1.8	98	82	4	232	49	7	14	28	1.71
9923183--9923233	24	2.1	25	88	3	77	15	7	3	72	1.23
9923272--9923313	22	1.9	22	90	0	66	14	4	4	76	1.12
9928729--9928771	10	4.2	10	81	3	50	81	6	11	0	0.87
9929138--9929197	17	3.6	16	82	10	66	80	1	13	5	0.96
9929163--9929226	21	3.0	21	70	22	62	78	1	15	4	1.00
9929139--9929233	28	3.3	28	75	13	86	77	1	14	6	1.01
9929139--9929237	12	8.7	10	72	21	54	77	1	15	6	1.01
9929155--9929202	18	2.7	18	81	12	62	81	2	10	6	0.95
9929925--9930083	79	2.0	79	81	4	187	39	9	20	30	1.84
9930507--9930788	21	12.7	21	76	10	231	39	8	13	37	1.76
9930553--9930792	87	2.7	87	84	7	304	40	8	13	37	1.75
9930507--9930788	133	2.1	133	83	7	340	39	8	13	37	1.76
9930553--9930836	93	3.2	88	85	6	331	39	8	13	38	1.76
9930553--9930835	46	6.3	45	80	7	269	39	8	13	38	1.75
9930965--9931034	21	3.3	20	74	9	59	32	10	17	40	1.82
9931524--9931578	26	2.2	26	83	9	69	21	7	3	67	1.31
9931543--9931591	15	3.3	15	76	20	50	22	6	2	69	1.21
9931595--9931656	32	2.0	30	81	12	72	17	9	8	64	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9931624--9931663	21	2.0	20	85	5	53	17	7	5	70	1.30
9933410--9933530	61	2.0	60	85	4	163	59	6	10	23	1.54
9942806--9942831	2	13.0	2	100	0	52	50	0	0	50	1.00
9944794--9944844	13	4.1	13	73	19	54	47	5	0	47	1.26
9945441--9945560	61	2.0	61	91	0	195	33	12	16	37	1.86
9947921--9948070	75	2.0	75	93	0	255	39	16	14	30	1.87
9949202--9949228	2	13.5	2	100	0	54	48	0	0	51	1.00
9949533--9949566	16	2.1	16	88	5	50	47	17	17	17	1.84
9950014--9950062	24	2.1	22	88	7	71	48	4	4	42	1.40
9950026--9950103	30	2.6	30	91	0	120	50	5	5	39	1.47
9950351--9950455	49	2.1	49	79	10	108	44	13	15	26	1.83
9956534--9956576	21	2.0	21	95	0	77	13	37	18	30	1.90
9960771--9960932	88	1.8	88	92	2	272	56	4	7	31	1.48
9963064--9963093	2	15.0	2	92	0	51	50	3	0	46	1.18
9963655--9963685	16	1.9	16	93	0	53	64	3	0	32	1.09
9964849--9964890	16	2.5	17	76	3	50	30	9	7	52	1.61
9964873--9964988	24	5.0	24	78	13	118	31	3	10	54	1.51
9964879--9964969	47	1.9	47	93	0	155	31	3	10	53	1.52
9964899--9964987	20	4.1	20	75	18	79	32	3	10	53	1.51
9965018--9965078	31	2.0	31	93	0	104	29	8	13	49	1.70
9965049--9965102	20	2.6	21	82	14	67	31	5	9	53	1.56
9965095--9965184	20	4.8	20	69	12	73	33	4	8	53	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9965071--9965295	32	7.3	31	75	12	169	30	4	11	53	1.58
9965071--9965130	31	1.9	31	93	0	93	31	6	10	51	1.61
9965102--9965210	56	2.0	56	88	1	166	32	5	9	53	1.56
9965245--9965286	21	2.0	20	86	4	57	30	2	9	57	1.44
9965158--9965318	32	5.0	32	81	6	150	28	5	13	52	1.63
9965285--9965338	20	2.7	20	85	2	72	31	7	12	48	1.69
9965400--9965469	22	3.3	21	70	16	63	34	4	8	52	1.51
9965412--9965474	24	2.6	24	85	7	83	36	3	7	52	1.47
9965400--9965469	19	3.3	20	68	25	54	34	4	8	52	1.51
9965693--9965734	14	3.1	14	75	6	50	30	11	14	42	1.81
9971089--9971121	3	11.0	3	100	0	66	33	0	0	66	0.92
9977608--9977632	13	1.9	13	100	0	50	32	12	16	40	1.84
9977861--9979499	548	3.0	547	93	2	2795	33	16	18	31	1.94
9979767--9979974	115	1.8	111	85	7	258	27	16	17	37	1.91
9981797--9981871	34	2.2	34	82	0	87	54	4	1	40	1.27
9982479--9982515	18	2.1	18	100	0	74	32	13	5	48	1.65
9983126--9983153	14	2.0	14	100	0	56	71	0	28	0	0.86
9983591--9983616	2	13.0	2	100	0	52	50	0	0	50	1.00
9987094--9987153	20	3.0	20	87	2	77	20	11	23	45	1.83
9987186--9987240	20	2.8	20	86	2	76	23	12	16	47	1.81
9987267--9987326	13	4.5	14	81	12	56	20	8	20	51	1.72
9987280--9987336	13	4.4	13	90	0	87	21	8	15	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9987267--9987336	26	2.7	26	82	6	88	20	7	18	54	1.67
9989311--9989362	26	2.0	26	85	7	70	25	0	3	71	1.03
9990609--9990669	19	3.3	19	88	8	90	50	0	1	47	1.10
9990644--9990712	28	2.5	27	73	15	70	52	0	2	44	1.16
9990663--9990728	24	2.9	24	72	16	61	59	0	1	39	1.07
9994293--9994317	12	2.1	12	100	0	50	8	8	8	76	1.18
9996446--9996480	17	2.1	17	88	0	52	57	0	0	42	0.99
9996557--9996745	53	3.5	54	76	11	183	39	6	8	44	1.61
9997258--9997431	21	8.4	20	70	16	77	36	8	9	46	1.65
9997350--9997433	11	7.9	11	67	11	50	38	3	9	48	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100