genome.fa.s113.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  69  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15813449--15813499	26	2.0	26	92	7	86	27	25	15	31	1.96
15813293--15814211	184	5.0	184	80	3	970	20	26	28	23	1.99
15813632--15813683	26	2.0	25	92	3	86	26	25	23	25	2.00
15814000--15814052	26	2.0	26	96	0	97	26	28	20	24	1.99
15813293--15814211	367	2.5	367	82	2	1022	20	26	28	23	1.99
15814477--15814838	197	1.8	197	85	2	503	20	26	27	25	1.99
15815198--15815250	26	2.0	26	89	7	81	28	22	20	28	1.99
15816118--15816152	13	2.7	13	100	0	70	0	34	28	37	1.58
15817215--15817267	26	2.0	26	88	0	79	24	24	18	32	1.97
15824186--15824238	26	2.0	26	92	7	90	26	24	20	28	1.99
15824079--15824435	197	1.8	197	85	1	500	21	26	28	24	1.99
15824783--15824835	26	2.0	26	89	7	81	26	22	20	30	1.98
15824980--15825031	26	2.0	26	84	0	68	28	25	17	28	1.97
15826591--15826640	26	1.9	26	88	8	75	28	24	20	28	1.99
15826931--15826983	26	2.0	26	92	7	90	30	22	16	30	1.96
15827558--15827608	26	2.0	26	92	0	84	27	29	17	25	1.98
15827485--15828936	348	4.3	341	77	9	1244	20	27	28	23	1.99
15828275--15828932	157	4.2	158	77	4	553	20	26	29	23	1.99
15829115--15829193	26	3.0	26	88	3	115	29	27	17	25	1.98
15829495--15829547	26	2.0	26	82	13	65	28	24	16	30	1.97
15830711--15830763	26	2.0	26	96	0	97	28	26	18	26	1.98
15830543--15831240	329	2.1	330	90	1	1089	19	26	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15831164--15831568	159	2.5	159	79	0	398	18	27	29	24	1.98
15830972--15831907	502	1.9	501	83	3	1213	19	27	28	24	1.98
15831884--15831936	26	2.0	26	85	7	72	24	20	22	32	1.98
15831373--15832092	343	2.1	342	86	1	978	20	26	28	24	1.99
15831910--15832567	157	4.2	158	79	4	589	19	27	29	23	1.98
15832750--15832828	26	3.0	26	90	3	124	29	29	17	24	1.97
15833130--15833182	26	2.0	26	82	13	65	28	24	16	30	1.97
15834092--15834141	21	2.4	21	96	0	91	24	32	44	0	1.54
15834363--15834415	26	2.0	26	96	0	97	26	28	20	24	1.99
15834428--15834727	159	1.9	158	82	4	381	17	27	32	23	1.96
15835429--15836076	355	1.8	355	82	3	847	20	27	29	23	1.99
15836291--15836348	26	2.2	26	87	9	82	29	20	20	29	1.98
15836555--15837021	159	2.9	157	77	3	454	20	27	29	23	1.99
15836520--15837020	158	3.2	158	76	4	472	20	26	28	23	1.99
15836994--15837046	26	2.0	26	85	7	72	32	22	15	30	1.94
15837190--15837242	26	2.0	26	92	0	88	28	28	18	24	1.98
15835776--15837408	698	2.3	699	81	1	1869	21	26	28	24	1.99
15837424--15837464	18	2.2	19	95	4	75	21	17	41	19	1.90
15837682--15837737	26	2.2	26	87	6	78	28	21	21	28	1.99
15838195--15838249	26	2.1	26	83	6	67	29	21	16	32	1.95
15838407--15838459	26	2.0	26	88	0	79	26	28	20	24	1.99
15839800--15839852	26	2.0	26	88	0	79	26	30	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15840143--15840210	25	2.7	25	100	0	136	26	25	20	27	1.99
15840900--15840952	26	2.0	26	96	0	97	30	28	16	24	1.97
15841072--15841124	26	2.0	26	89	7	81	26	22	20	30	1.98
15841857--15842328	158	3.0	158	77	6	454	19	26	30	23	1.98
15841866--15842328	159	2.9	158	77	7	447	19	26	30	24	1.98
15842300--15842352	26	2.0	26	89	7	81	28	24	18	28	1.98
15842190--15842552	197	1.8	196	84	6	493	21	25	27	24	1.99
15842494--15842547	26	2.1	26	89	0	81	27	25	20	25	1.99
15845239--15845317	24	3.3	23	79	11	88	27	34	18	18	1.95
15847724--15847776	26	2.0	26	92	7	90	26	24	20	28	1.99
15847921--15847973	26	2.0	26	88	0	79	28	26	18	26	1.98
15847947--15848291	159	2.2	158	84	3	435	19	24	29	26	1.98
15848264--15848316	26	2.0	26	92	7	90	26	22	20	30	1.98
15849290--15849656	158	2.3	157	81	5	418	21	25	28	25	1.99
15849055--15849817	159	4.8	159	74	7	498	20	26	28	23	1.99
15850391--15850443	26	2.0	26	85	7	72	30	24	16	28	1.97
15850601--15850652	26	2.0	26	88	0	77	30	28	15	25	1.96
15850786--15850838	26	2.0	26	92	7	90	26	24	20	28	1.99
15850233--15851075	395	2.2	389	83	3	1021	23	25	26	24	2.00
15850781--15851266	205	2.4	205	83	2	575	24	25	25	24	2.00
15850991--15851043	26	2.0	26	85	0	70	28	24	18	28	1.98
15851199--15851248	26	1.9	26	91	0	82	28	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15851539--15851591	26	2.0	26	85	7	72	30	24	16	28	1.97
15852030--15852080	26	2.0	26	92	7	86	27	23	19	29	1.98
15852225--15852278	26	2.1	26	86	6	74	31	22	16	29	1.96
15853068--15853497	184	2.3	183	83	2	513	21	25	29	24	1.99
15853319--15853683	197	1.9	196	83	1	480	21	26	29	23	1.99
15854298--15854350	26	2.0	26	85	7	72	30	26	16	26	1.97
15854995--15855047	26	2.0	26	92	0	88	26	26	20	26	1.99
15855178--15855230	26	2.0	26	92	0	88	30	26	16	26	1.97
15854889--15855415	183	2.9	184	82	4	618	20	26	28	24	1.99
15856088--15856551	159	2.9	157	78	6	506	17	27	31	23	1.97
15858332--15858384	26	2.0	26	89	7	81	32	26	15	26	1.95
15858422--15858685	147	1.8	146	84	5	354	17	29	29	22	1.97
15858821--15858873	26	2.0	26	89	7	81	26	22	20	30	1.98
15858663--15859032	184	2.0	184	84	2	474	21	25	28	25	1.99
15858568--15859218	344	1.9	343	83	3	853	19	26	28	25	1.99
15859877--15859928	26	2.0	26	96	0	95	26	25	19	28	1.98
15860210--15860259	26	1.9	26	92	8	84	26	22	20	32	1.98
15860938--15861034	26	3.8	25	84	2	113	31	23	15	28	1.95
15860932--15861034	52	2.0	52	90	3	163	32	23	16	28	1.96
15861327--15861377	26	2.0	26	88	7	77	29	19	17	33	1.95
15862011--15862063	26	2.0	26	92	7	90	26	24	20	28	1.99
15862189--15862697	159	3.2	157	76	7	478	20	25	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15862877--15862929	26	2.0	26	85	7	72	30	28	15	26	1.96
15864611--15864663	26	2.0	26	89	7	81	26	24	18	30	1.98
15865511--15865861	158	2.2	159	78	6	361	19	27	28	24	1.99
15865830--15865885	26	2.2	26	93	6	96	28	23	19	28	1.98
15865910--15865941	12	2.7	12	100	0	64	34	21	34	9	1.86
15866213--15866265	26	2.0	26	88	0	79	30	28	16	24	1.97
15866303--15866741	159	2.8	159	83	3	526	17	27	30	23	1.97
15871275--15871610	159	2.1	157	83	4	408	20	25	29	25	1.99
15871768--15871820	26	2.0	26	89	7	81	28	24	18	28	1.98
15872148--15872200	26	2.0	26	85	0	70	26	24	18	30	1.98
15871425--15872365	380	2.5	372	81	6	1048	20	26	29	23	1.99
15872283--15872680	159	2.5	160	78	5	437	17	29	30	23	1.97
15873375--15873427	26	2.0	26	92	0	88	26	26	20	26	1.99
15873401--15873796	159	2.5	158	76	5	395	20	25	30	22	1.98
15873879--15873928	26	1.9	26	88	8	75	26	26	22	26	2.00
15874058--15874110	26	2.0	26	96	0	97	30	28	16	24	1.97
15873718--15874269	182	3.0	182	78	4	581	21	26	27	24	1.99
15875949--15876001	26	2.0	26	92	7	90	26	24	20	28	1.99
15875791--15876159	183	2.0	184	84	2	474	21	26	27	24	2.00
15875908--15876595	356	1.9	355	80	3	794	20	25	28	25	1.99
15877529--15877579	26	2.0	26	92	0	84	29	27	15	27	1.96
15879396--15879448	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15879565--15880001	184	2.4	184	87	3	585	21	25	28	24	1.99
15879790--15879842	26	2.0	26	92	7	90	30	24	16	28	1.97
15880146--15880198	26	2.0	26	92	0	88	28	28	18	24	1.98
15879754--15880452	356	2.0	356	80	2	796	20	25	28	25	1.99
15881372--15881422	26	2.0	26	92	0	84	29	27	15	27	1.96
15881873--15881925	26	2.0	26	89	7	81	28	22	18	30	1.98
15883242--15883294	26	2.0	26	89	7	81	28	24	18	28	1.98
15882343--15883341	520	1.9	515	81	4	1197	21	26	28	23	1.99
15883395--15883447	26	2.0	26	88	0	79	26	26	18	28	1.98
15883728--15884252	158	3.3	157	73	5	455	19	26	29	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100