genome.fa.s113.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  89  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17859573--17860194	237	2.6	235	90	4	1000	34	13	8	44	1.73
17859573--17860192	118	5.2	118	90	4	973	34	13	7	44	1.73
17860207--17860286	6	13.8	6	73	12	60	77	1	7	13	1.04
17860208--17860287	23	3.5	22	81	11	90	77	1	7	13	1.04
17860219--17860278	17	3.5	17	76	13	59	76	0	8	15	1.00
17860291--17860360	4	17.0	4	85	5	95	72	4	0	22	1.01
17860232--17860366	29	4.6	29	74	13	107	74	2	2	20	1.05
17860512--17860562	22	2.3	22	93	0	84	5	27	52	13	1.63
17861315--17861373	18	3.4	17	76	23	61	77	1	1	18	0.93
17870119--17870347	40	5.8	39	75	4	181	25	11	17	45	1.82
17870118--17870364	78	3.1	79	74	6	225	25	10	17	46	1.80
17870469--17870891	40	10.6	39	75	9	309	26	14	17	40	1.89
17870561--17870894	120	2.8	122	80	5	369	26	14	18	40	1.89
17870747--17870929	80	2.3	81	80	4	201	24	15	19	39	1.91
17871102--17871131	6	5.0	6	100	0	60	33	0	0	66	0.92
17872042--17872099	27	2.1	28	83	3	73	13	0	13	72	1.13
17872184--17872218	13	2.6	13	90	4	52	80	2	0	17	0.84
17872359--17872396	19	2.0	20	89	5	60	71	0	5	23	1.07
17872552--17872576	13	1.9	13	100	0	50	76	0	0	24	0.80
17872846--17872961	51	2.3	51	75	1	117	39	12	16	31	1.85
17873081--17873116	3	12.0	3	100	0	72	66	0	0	33	0.92
17878565--17878627	3	21.0	3	100	0	126	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17883566--17883761	97	2.0	97	93	2	331	31	17	20	30	1.96
17884959--17885006	18	2.8	17	79	17	62	35	0	6	58	1.23
17885517--17885542	13	2.0	13	100	0	52	15	0	23	61	1.33
17885913--17885948	19	1.9	18	88	5	54	19	2	8	69	1.27
17887615--17887644	14	2.1	14	93	0	51	56	0	33	10	1.32
17889830--17889875	23	2.0	23	95	0	83	23	8	15	52	1.70
17890062--17890134	30	2.4	31	77	13	89	80	1	15	2	0.89
17890095--17890129	12	2.8	13	91	8	56	82	0	14	2	0.77
17890062--17890136	28	2.6	28	81	8	89	78	1	17	2	0.93
17891382--17891540	86	1.8	87	87	4	241	32	16	13	37	1.88
17891380--17891567	86	2.2	87	81	8	231	33	16	13	36	1.88
17891478--17891617	68	2.1	68	82	2	165	30	20	12	36	1.90
17892349--17892411	17	3.6	18	74	20	53	30	1	4	63	1.24
17892355--17892454	38	2.8	36	79	10	114	35	1	6	58	1.30
17900526--17900564	12	3.0	13	85	7	53	89	0	10	0	0.48
17900526--17900560	16	2.2	16	94	0	61	91	0	8	0	0.42
17901376--17902289	33	27.8	33	79	4	801	30	20	16	33	1.94
17902799--17903253	121	3.7	122	92	0	736	33	16	16	33	1.91
17903255--17903439	88	2.1	88	88	2	273	22	17	17	42	1.89
17903423--17903491	23	3.0	23	91	2	104	21	23	24	30	1.99
17903431--17903496	22	3.0	22	88	2	87	24	22	22	30	1.99
17903343--17903593	133	1.9	132	85	2	351	22	19	19	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17903447--17903663	110	2.0	110	83	3	276	23	21	18	36	1.95
17905017--17905078	17	3.8	16	79	10	54	24	0	3	72	0.99
17905461--17905577	16	7.2	16	78	6	110	46	33	3	17	1.65
17905461--17905590	32	4.0	33	76	8	124	44	33	3	17	1.67
17905461--17905590	33	4.0	33	78	8	133	44	33	3	17	1.67
17906703--17906748	22	2.1	21	84	4	56	36	17	13	32	1.88
17906802--17906888	43	2.0	42	85	10	115	34	11	14	39	1.83
17908248--17908273	3	8.7	3	100	0	52	65	0	0	34	0.93
17908314--17908363	21	2.4	22	86	6	68	48	0	4	48	1.20
17908491--17908526	16	2.2	17	95	5	65	77	0	0	22	0.76
17908648--17908696	21	2.3	21	82	10	55	61	6	2	30	1.32
17908665--17908717	22	2.5	22	81	9	56	62	3	0	33	1.13
17911134--17911181	8	5.8	8	83	9	51	25	0	2	72	0.95
17911135--17911173	18	2.2	17	86	4	51	20	0	2	76	0.90
17912088--17912712	41	15.2	41	84	6	644	38	20	14	26	1.91
17913011--17913091	43	1.9	42	90	9	130	35	13	11	39	1.80
17914517--17914554	16	2.4	16	90	0	58	7	15	2	73	1.17
17914502--17914572	37	2.0	33	84	10	88	5	21	2	70	1.21
17920992--17921037	18	2.7	18	87	12	62	17	0	2	80	0.81
17920992--17921037	9	5.4	8	82	14	56	17	0	2	80	0.81
17923681--17923727	24	2.0	22	88	8	67	61	0	4	34	1.15
17926959--17926997	19	2.1	19	95	0	69	33	7	15	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17928845--17928885	3	13.7	3	92	0	64	60	0	2	36	1.10
17928845--17928904	6	10.0	6	87	0	57	55	0	3	41	1.16
17928845--17928903	12	4.9	12	82	0	73	55	0	3	40	1.16
17929680--17929705	9	2.9	9	100	0	52	69	0	0	30	0.89
17937004--17937035	5	6.6	5	92	7	57	81	0	0	18	0.70
17937037--17937379	33	10.5	33	82	4	394	30	20	15	33	1.94
17937038--17937379	65	5.2	65	82	6	397	30	20	15	33	1.94
17937035--17937379	98	3.5	98	84	3	446	30	20	15	33	1.94
17937881--17937911	14	2.1	14	94	5	53	64	3	0	32	1.09
17937910--17938355	121	3.7	121	92	0	730	31	15	16	36	1.90
17937899--17938355	243	1.9	241	91	1	745	32	14	16	36	1.89
17938441--17938536	23	4.4	22	79	7	106	26	21	19	32	1.97
17938441--17938544	22	4.7	23	71	15	85	25	22	20	31	1.98
17938848--17938934	22	4.0	22	80	8	106	26	20	19	33	1.97
17938840--17938923	43	2.0	43	90	0	132	25	22	20	32	1.98
17938883--17939240	109	3.3	109	84	1	448	22	21	17	38	1.93
17939000--17939043	22	2.0	22	86	0	61	27	25	18	29	1.98
17939125--17939321	88	2.3	86	90	1	313	20	19	19	40	1.92
17939306--17939394	22	4.0	22	80	1	97	26	22	19	31	1.97
17939460--17939503	22	2.0	22	90	0	70	25	29	18	27	1.98
17939363--17939711	109	3.2	109	84	4	445	22	24	17	35	1.95
17939679--17939743	33	2.0	32	87	3	94	27	27	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17939569--17939843	143	1.9	143	84	1	363	24	23	16	35	1.95
17939728--17939990	88	3.0	88	83	5	343	20	20	17	41	1.90
17941549--17941615	17	4.0	17	77	9	66	49	29	1	19	1.57
17949566--17949805	126	1.9	125	82	5	297	31	12	16	38	1.87
17949449--17949806	125	2.9	120	76	7	320	31	13	16	38	1.87
17952682--17952727	3	15.0	3	95	4	83	67	0	0	32	0.91
17952726--17952790	3	21.7	3	100	0	130	33	0	32	33	1.58
17956226--17956267	22	1.9	22	90	0	66	33	26	4	35	1.77
17956236--17956277	22	1.9	22	85	9	59	35	19	7	38	1.79
17959843--17960042	59	3.4	59	81	11	232	27	19	11	42	1.84
17959843--17960065	58	3.8	59	81	8	231	28	19	10	41	1.85
17960020--17960194	65	2.8	61	77	13	160	39	14	13	33	1.84
17962794--17962969	64	2.8	62	78	7	174	33	13	13	39	1.84
17962677--17963031	186	1.9	185	82	4	446	36	13	15	35	1.86
17962970--17963157	62	3.1	62	82	9	235	42	12	18	26	1.86
17962948--17963133	61	3.2	58	81	13	229	41	11	19	26	1.85
17962948--17963134	59	3.2	59	81	12	233	42	11	19	26	1.85
17962975--17963159	59	3.1	58	74	14	171	40	12	19	27	1.88
17966130--17966172	23	1.9	22	85	4	59	6	18	0	74	1.04
17967277--17967351	39	1.9	40	94	2	134	12	18	18	50	1.77
17970323--17970374	22	2.4	21	84	9	68	36	3	26	32	1.75
17973799--17973848	3	16.7	3	100	0	100	34	32	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17973847--17973898	3	18.0	3	88	7	81	32	1	0	65	1.04
17973855--17973905	25	2.0	25	88	0	75	33	1	1	62	1.17
17976782--17977072	126	2.3	124	80	4	298	40	15	13	31	1.85
17976852--17977139	125	2.3	126	77	7	268	40	14	12	32	1.84
17979609--17979657	22	2.3	21	79	10	55	10	10	6	73	1.25
17984998--17985038	18	2.4	17	84	11	57	19	0	29	51	1.47
17986410--17986469	15	4.2	14	75	10	59	11	1	8	78	1.03
17986617--17986882	88	3.0	87	85	6	335	40	16	21	22	1.91
17987098--17987141	22	2.0	22	90	0	70	27	18	29	25	1.98
17986890--17987250	109	3.3	110	81	5	428	36	17	23	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100