genome.fa.s113.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  18  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5169686--5169711	3	8.7	3	100	0	52	69	30	0	0	0.89
5169940--5169974	16	2.2	16	89	0	52	60	14	2	22	1.48
5169939--5169977	16	2.5	15	84	8	51	53	17	2	25	1.56
5181780--5181824	22	2.0	22	84	16	58	37	0	4	57	1.19
5181885--5181963	29	2.6	30	80	4	88	45	2	0	51	1.14
5182501--5182531	12	2.6	12	94	0	53	51	9	0	38	1.35
5184318--5184359	2	21.0	2	100	0	84	50	0	50	0	1.00
5189612--5189657	20	2.3	21	88	7	69	39	0	2	58	1.10
5193472--5193822	187	1.9	187	89	1	542	41	11	8	37	1.73
5194048--5194074	14	1.9	14	100	0	54	7	29	33	29	1.85
5194534--5194595	12	5.3	12	81	14	69	66	0	0	33	0.92
5194533--5194590	20	3.2	20	70	27	65	67	0	0	32	0.91
5194529--5194603	12	6.4	12	73	18	52	65	0	0	34	0.93
5199801--5200093	60	4.9	59	87	9	398	33	12	8	46	1.72
5199987--5200075	27	3.2	27	62	20	65	38	14	5	41	1.70
5199801--5200114	123	2.6	124	86	9	427	33	11	8	46	1.70
5200165--5200203	8	5.4	8	80	20	50	79	7	0	12	0.93
5200171--5200212	13	3.3	13	86	6	59	78	7	2	11	1.04
5200532--5200569	20	1.9	20	94	0	67	23	18	26	31	1.97
5200533--5200577	20	2.3	20	88	3	65	26	22	24	26	2.00
5200629--5200699	31	2.3	31	87	0	97	26	25	22	25	2.00
5201119--5201158	15	2.5	17	77	22	50	75	2	5	17	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5201461--5201546	1	86.0	1	85	0	118	0	0	6	93	0.37
5201469--5201546	18	4.3	18	91	4	131	0	0	6	93	0.34
5201552--5201803	39	6.5	39	95	3	422	36	22	18	23	1.95
5201821--5202207	41	9.4	39	88	9	558	38	20	17	22	1.93
5201814--5202207	83	4.8	81	89	8	584	38	21	18	22	1.93
5201821--5202207	124	3.1	123	96	2	688	38	20	17	22	1.93
5203397--5203426	8	3.6	8	95	4	51	10	10	0	80	0.92
5203397--5203426	9	3.4	9	90	9	53	10	10	0	80	0.92
5207302--5207486	66	3.0	62	86	9	259	30	10	8	50	1.66
5207548--5207603	12	4.8	12	81	12	55	82	3	1	12	0.88
5207856--5207900	19	2.4	19	92	0	72	26	22	28	22	1.99
5208508--5208547	20	2.0	20	90	9	64	20	25	30	25	1.99
5208654--5208707	8	6.6	8	78	16	58	70	3	1	24	1.13
5208657--5208723	3	23.0	3	74	19	54	70	2	2	23	1.15
5209118--5209152	16	2.2	16	89	0	52	48	34	0	17	1.47
5209465--5209491	2	13.5	2	100	0	54	51	0	0	48	1.00
5210384--5210434	26	2.0	25	85	11	68	25	3	1	68	1.17
5213411--5213459	24	2.0	24	96	0	89	46	10	12	30	1.74
5219744--5219811	24	2.9	24	82	4	86	48	23	1	26	1.59
5219738--5219811	16	4.8	16	71	17	57	48	25	1	24	1.59
5221487--5221664	89	2.0	89	92	2	295	25	20	21	32	1.97
5222650--5222679	15	2.0	15	93	0	51	40	23	6	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5226235--5226263	14	2.0	15	93	6	51	51	0	0	48	1.00
5226797--5226875	25	3.1	25	80	8	88	74	20	2	2	1.05
5227704--5227758	8	6.8	8	74	15	51	70	5	1	21	1.16
5227706--5227759	18	3.2	16	76	20	56	72	5	1	20	1.14
5229858--5230596	251	3.0	250	94	2	1293	53	12	7	26	1.64
5239253--5239297	22	2.0	22	84	16	58	37	0	4	57	1.19
5239358--5239436	29	2.6	30	80	4	88	45	2	0	51	1.14
5239975--5240005	12	2.6	12	94	0	53	51	9	0	38	1.35
5241797--5241840	2	22.0	2	100	0	88	50	0	50	0	1.00
5247138--5247171	17	1.9	18	88	5	52	38	0	0	61	0.96
5247142--5247200	14	4.1	15	72	16	54	38	0	0	61	0.96
5247154--5247205	27	1.9	27	85	14	72	36	0	0	63	0.95
5247175--5247219	20	2.3	19	88	11	65	42	0	0	57	0.98
5248601--5248625	13	1.9	13	100	0	50	52	0	0	48	1.00
5248739--5248775	12	3.0	13	80	11	51	51	0	0	48	1.00
5251033--5251378	187	1.9	186	86	1	496	41	11	8	37	1.73
5252088--5252149	12	5.3	12	79	11	58	61	0	1	37	1.06
5252121--5252342	113	2.0	113	90	2	349	47	10	4	37	1.58
5260251--5260550	150	2.0	150	88	1	440	27	5	21	46	1.73
5263596--5263623	3	9.3	3	100	0	56	0	32	0	67	0.91
5264253--5264434	93	2.0	93	92	0	301	19	15	17	47	1.83
5280297--5280336	20	2.1	19	85	4	53	60	0	2	37	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5281491--5281533	22	2.0	21	86	13	61	72	13	0	13	1.13
5281998--5282324	39	8.5	39	79	10	323	43	20	10	25	1.83
5282022--5282318	79	3.8	77	84	9	347	42	21	11	24	1.85
5282254--5282318	33	2.0	33	90	0	103	36	23	13	26	1.92
5282412--5282535	41	3.1	40	81	9	153	45	20	10	22	1.81
5290682--5290707	12	2.2	12	100	0	52	15	19	7	57	1.62
5295048--5295085	14	3.0	13	85	14	53	68	13	0	18	1.21
5295582--5295652	22	3.2	22	69	15	58	2	5	14	77	1.06
5297007--5297309	152	2.0	152	98	1	581	34	13	20	31	1.91
5301558--5301617	27	2.3	26	82	5	75	33	15	6	45	1.72
5308664--5308701	6	6.7	6	88	8	53	71	2	15	10	1.25
5309463--5309490	6	4.7	6	100	0	56	46	0	0	53	1.00
5310120--5310392	132	2.1	133	88	2	406	45	7	14	32	1.72
5318818--5318861	21	2.0	22	82	4	54	34	11	2	52	1.50
5336380--5336410	2	15.5	2	100	0	62	48	0	51	0	1.00
5350499--5350536	4	9.5	4	83	11	51	23	2	0	73	0.95
5351048--5351082	15	2.3	15	85	0	52	57	2	0	40	1.14
5351094--5351139	15	2.8	17	80	12	60	56	2	0	41	1.11
5351094--5351145	10	5.0	10	72	9	50	57	1	0	40	1.10
5351113--5351146	11	3.2	11	83	8	52	61	0	0	38	0.96
5352363--5352413	3	17.3	3	95	4	95	64	0	0	35	0.94
5352701--5352781	29	2.7	29	75	7	74	50	27	2	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5352747--5352781	15	2.4	15	90	4	54	51	22	2	22	1.61
5352849--5352943	49	1.9	49	83	8	122	52	26	4	16	1.62
5352911--5352950	14	2.7	15	84	3	55	57	25	2	15	1.50
5352823--5352950	15	9.0	14	64	17	59	51	28	3	16	1.59
5354140--5354169	15	2.0	15	93	0	51	23	0	0	76	0.78
5359549--5359589	17	2.4	17	83	0	55	78	2	0	19	0.87
5361154--5361199	18	2.6	18	82	0	56	26	26	10	36	1.89
5361732--5361794	22	2.9	22	79	6	74	34	26	14	23	1.93
5361857--5361916	22	2.7	22	84	2	75	30	18	15	36	1.91
5361858--5361929	22	3.2	22	84	5	65	29	16	13	40	1.87
5361996--5362047	22	2.4	22	86	0	68	28	23	17	30	1.97
5361686--5362058	132	2.8	132	79	3	403	24	18	16	40	1.90
5361857--5362159	154	2.0	154	82	7	373	27	17	13	41	1.88
5362068--5362258	88	2.2	88	84	1	240	27	18	11	42	1.85
5362294--5362468	90	1.9	90	82	0	215	22	20	16	41	1.90
5362459--5362543	44	1.9	44	82	0	107	32	22	12	31	1.92
5362606--5362657	22	2.3	23	83	6	70	32	9	13	44	1.76
5362650--5362757	36	3.0	36	83	4	110	17	19	18	44	1.87
5362675--5362757	37	2.3	36	82	2	103	16	20	18	44	1.87
5363057--5363086	15	2.0	15	93	0	51	56	3	0	40	1.16
5364488--5364544	3	19.7	3	82	13	75	64	0	1	33	1.04
5364683--5364811	14	9.0	14	63	18	52	49	29	2	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5364786--5364828	23	1.9	22	86	13	61	55	18	4	20	1.60
5365918--5366000	28	3.0	27	69	25	75	49	8	8	33	1.63
5365994--5366032	20	2.0	20	85	10	53	66	0	7	25	1.18
5367814--5367860	20	2.4	20	78	3	51	76	6	2	14	1.08
5367848--5367892	14	3.1	14	78	12	54	66	0	2	31	1.04
5367982--5368029	16	3.1	16	81	6	71	58	0	0	41	0.98
5369025--5369064	2	21.0	2	90	10	66	47	0	0	52	1.00
5370420--5370468	21	2.4	19	75	18	53	44	14	30	10	1.78
5370426--5370467	21	1.9	21	85	9	57	45	14	30	9	1.77
5370484--5370520	19	1.9	19	88	0	56	35	13	37	13	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100