genome.fa.s113.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  80  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16684287--16684621	158	2.1	159	79	5	356	22	30	27	19	1.98
16684287--16684629	157	2.2	159	78	5	363	22	30	27	20	1.98
16684603--16684655	26	2.0	26	89	7	81	26	18	26	28	1.98
16683919--16684726	342	2.4	343	82	4	977	24	28	26	19	1.99
16685668--16685719	26	2.0	26	85	14	72	26	15	26	30	1.96
16685876--16685928	26	2.0	26	85	7	72	30	18	22	28	1.98
16686376--16686428	26	2.0	26	85	7	72	32	22	18	26	1.97
16687078--16687130	26	2.0	26	92	7	90	28	20	22	28	1.99
16688458--16688510	26	2.0	26	89	7	81	30	20	22	26	1.98
16689156--16689208	26	2.0	26	85	7	72	32	18	22	26	1.97
16689666--16689718	26	2.0	26	92	7	90	28	20	24	26	1.99
16690394--16690446	26	2.0	26	89	7	81	28	20	22	28	1.99
16690737--16690789	26	2.0	26	89	7	81	26	20	26	26	1.99
16690944--16691465	195	2.7	194	77	3	521	23	26	27	22	2.00
16691521--16692076	292	1.9	293	82	2	697	25	28	26	18	1.98
16692142--16692219	26	3.0	26	84	1	104	28	20	21	29	1.98
16693050--16693102	26	2.0	26	85	0	70	26	18	24	30	1.98
16692840--16693201	184	2.0	185	85	2	496	23	26	27	22	1.99
16693394--16693736	158	2.2	158	82	2	402	23	28	27	21	1.99
16694603--16694653	26	2.0	26	92	7	86	31	15	25	27	1.96
16695104--16695182	26	3.0	26	85	10	108	27	18	25	27	1.98
16694945--16695340	210	1.9	210	84	4	539	26	28	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16694602--16695682	526	2.1	527	81	3	1221	25	28	24	21	1.99
16695630--16695682	26	2.0	26	85	0	70	26	16	26	30	1.97
16696705--16696757	26	2.0	26	89	7	81	24	16	28	30	1.97
16697129--16697181	26	2.0	26	92	0	88	24	18	28	28	1.98
16698487--16698539	26	2.0	26	89	7	81	28	18	24	28	1.98
16698830--16698883	26	2.0	26	85	3	72	24	16	27	31	1.96
16699027--16699079	26	2.0	26	85	7	72	30	20	22	26	1.98
16700231--16700283	26	2.0	26	96	0	97	28	20	24	26	1.99
16701059--16701111	26	2.0	26	88	0	79	26	18	26	28	1.98
16701771--16701823	26	2.0	26	92	0	88	26	18	28	26	1.98
16702626--16702678	26	2.0	26	92	0	88	26	20	26	26	1.99
16702836--16702888	26	2.0	26	89	7	81	28	18	24	28	1.98
16703656--16703705	26	1.9	26	91	0	82	26	22	28	24	1.99
16704389--16704441	26	2.0	26	92	0	88	26	20	26	26	1.99
16703476--16705930	740	3.3	735	85	3	3150	25	23	23	26	2.00
16705129--16705181	26	2.0	26	92	0	88	30	20	24	24	1.99
16705867--16705918	25	2.0	26	92	3	88	26	21	25	26	1.99
16706781--16706833	26	2.0	26	96	0	97	24	20	28	26	1.99
16707639--16707691	26	2.0	26	85	0	70	24	15	28	32	1.95
16706583--16708588	869	2.3	847	78	6	2022	24	27	26	21	1.99
16709416--16709468	26	2.0	26	88	0	79	28	20	24	26	1.99
16709240--16709572	185	1.8	185	82	5	440	27	28	24	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16709810--16710097	158	1.8	159	80	2	346	25	28	26	20	1.99
16710285--16710340	26	2.2	26	93	0	94	25	17	26	30	1.97
16710996--16711048	26	2.0	26	89	7	81	28	16	26	28	1.97
16711496--16711548	26	2.0	26	92	0	88	24	16	26	32	1.97
16718156--16718520	158	2.3	158	78	4	376	26	30	25	18	1.98
16718156--16718558	159	2.5	158	76	5	400	26	29	26	17	1.98
16718631--16718683	26	2.0	26	92	0	88	24	18	28	28	1.98
16719010--16719063	26	2.1	26	89	6	83	27	18	25	27	1.98
16719512--16719564	26	2.0	26	88	0	79	28	16	22	32	1.96
16720244--16720296	26	2.0	26	85	7	72	26	18	24	30	1.98
16720745--16720797	26	2.0	26	92	0	88	26	20	26	26	1.99
16721609--16721661	26	2.0	26	96	0	97	24	20	28	26	1.99
16728232--16728284	26	2.0	26	89	7	81	28	18	26	26	1.98
16728257--16728658	159	2.5	158	77	4	416	25	28	27	18	1.98
16728943--16729284	184	1.9	185	84	0	461	25	26	25	22	2.00
16729102--16729154	26	2.0	26	89	7	81	30	13	22	33	1.92
16729614--16729669	26	2.2	26	90	0	85	26	19	23	30	1.98
16730348--16730400	26	2.0	26	92	7	90	28	20	24	26	1.99
16730849--16730899	26	2.0	26	92	0	84	23	19	29	27	1.98
16731919--16731971	26	2.0	26	92	7	90	28	20	24	26	1.99
16731714--16732074	196	1.8	196	83	1	472	23	28	25	22	1.99
16732435--16732487	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16734013--16734065	26	2.0	26	92	0	88	24	18	28	28	1.98
16734564--16734619	26	2.2	26	96	0	103	25	16	26	32	1.96
16734956--16735008	26	2.0	26	92	0	88	24	18	28	28	1.98
16734416--16735376	392	2.4	394	81	5	1019	23	27	25	23	2.00
16735165--16735217	26	2.0	26	92	7	90	28	20	24	26	1.99
16735191--16735850	159	4.2	160	74	8	508	24	29	23	22	1.99
16736163--16736215	26	2.0	26	88	0	79	26	18	26	28	1.98
16736360--16736412	26	2.0	26	82	7	63	30	20	22	26	1.98
16736512--16739015	549	4.6	534	77	8	1709	25	26	24	23	2.00
16737227--16737278	25	2.0	26	92	3	88	25	19	26	28	1.98
16737775--16737827	26	2.0	26	85	0	70	24	16	26	32	1.97
16736920--16739314	549	4.3	551	77	5	2164	25	26	24	23	2.00
16738166--16738217	26	2.0	26	85	7	70	30	15	19	34	1.93
16738349--16738401	26	2.0	26	85	0	70	26	16	26	30	1.97
16737943--16738445	182	2.7	184	79	5	554	24	25	24	25	2.00
16739501--16739551	26	2.0	26	84	0	66	31	13	19	35	1.91
16740186--16740238	26	2.0	26	92	0	88	26	16	26	30	1.97
16740908--16740960	26	2.0	26	92	7	90	28	20	24	26	1.99
16741447--16741499	26	2.0	26	92	7	90	28	16	24	30	1.97
16742169--16742671	159	3.2	156	73	9	419	23	30	25	20	1.99
16740934--16742971	696	2.9	693	80	4	2032	24	28	26	21	1.99
16742854--16742906	26	2.0	26	89	7	81	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16743846--16743898	26	2.0	26	82	7	63	28	16	24	30	1.97
16744675--16744727	26	2.0	26	82	7	63	30	16	22	30	1.96
16745832--16745883	26	2.0	26	85	7	70	28	15	25	30	1.96
16746004--16746074	37	1.9	37	85	0	97	4	36	26	32	1.76
16746421--16746473	26	2.0	26	89	7	81	28	20	22	28	1.99
16747679--16747731	26	2.0	26	89	7	81	28	18	24	28	1.98
16748022--16748074	26	2.0	26	92	0	88	26	20	26	26	1.99
16750296--16750348	26	2.0	26	89	7	81	28	18	24	28	1.98
16750639--16750691	26	2.0	26	92	0	88	26	20	26	26	1.99
16751852--16751904	26	2.0	26	89	7	81	28	18	24	28	1.98
16751622--16752075	196	2.3	195	82	4	522	23	28	25	23	2.00
16752412--16752464	26	2.0	26	85	7	72	26	20	22	30	1.98
16752607--16752658	25	2.0	26	88	3	79	26	23	23	26	2.00
16752632--16753031	159	2.5	157	74	6	349	21	25	32	21	1.98
16753106--16753158	26	2.0	26	92	7	90	26	22	20	30	1.98
16753303--16753355	26	2.0	26	88	0	79	32	26	15	26	1.95
16752254--16754541	697	3.3	690	78	6	2249	21	25	28	24	1.99
16753473--16753852	158	2.4	158	79	4	392	21	25	28	24	1.99
16753986--16754038	26	2.0	26	96	0	97	26	24	20	28	1.99
16753281--16754514	685	1.8	683	83	3	1647	20	26	28	24	1.99
16754019--16754514	158	3.1	157	76	6	466	19	25	30	24	1.99
16755255--16755307	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16755597--16755649	26	2.0	26	85	7	72	26	22	18	32	1.97
16755834--16755858	12	2.1	12	100	0	50	16	24	16	44	1.86
16756212--16756264	26	2.0	26	96	0	97	26	28	20	24	1.99
16756881--16756933	26	2.0	26	88	0	79	30	28	16	24	1.97
16756773--16757471	184	3.7	184	76	7	616	22	26	27	23	1.99
16756622--16757471	381	2.2	380	87	1	1173	22	26	27	24	2.00
16757762--16757814	26	2.0	26	89	7	81	26	24	18	30	1.98
16757954--16758009	26	2.2	26	90	0	85	32	25	17	25	1.97
16758302--16758354	26	2.0	26	89	7	81	24	24	22	28	2.00
16758852--16758904	26	2.0	26	89	7	81	28	24	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100