genome.fa.s113.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  54  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12915358--12915394	16	2.3	16	100	0	74	29	5	8	56	1.51
12917998--12918031	3	11.3	3	100	0	68	32	0	0	67	0.91
12918712--12918740	2	15.0	2	92	7	51	48	0	0	51	1.00
12920041--12920071	3	10.3	3	100	0	62	64	0	0	35	0.94
12921177--12921223	24	2.0	24	95	0	85	57	4	8	29	1.48
12921807--12921844	19	2.0	19	100	0	76	26	10	36	26	1.89
12924536--12924597	29	2.1	29	90	6	97	37	3	6	53	1.43
12925458--12925514	23	2.5	22	80	11	60	50	7	5	36	1.52
12925971--12926056	42	2.0	42	95	0	154	19	11	18	50	1.77
12926179--12926203	2	12.5	2	100	0	50	52	0	0	48	1.00
12927440--12927534	47	2.0	47	89	4	147	45	0	16	37	1.48
12931959--12932018	31	1.9	31	86	6	86	35	18	11	35	1.87
12932579--12932613	3	11.7	3	100	0	70	34	31	0	34	1.58
12933194--12933336	19	7.4	19	67	21	61	51	12	6	30	1.64
12933248--12933352	39	2.7	39	77	4	104	53	13	7	25	1.66
12933278--12933333	19	2.8	20	81	5	69	57	10	5	26	1.54
12934608--12934689	6	13.7	6	78	0	74	60	6	6	26	1.44
12934588--12934652	18	3.7	18	81	2	69	63	7	4	24	1.41
12934608--12934683	30	2.5	30	91	0	125	60	5	6	27	1.43
12934608--12934684	18	4.3	18	79	0	82	59	5	6	28	1.44
12938250--12938418	39	4.3	38	80	4	142	50	11	4	33	1.59
12938250--12938418	19	8.7	19	76	6	142	50	11	4	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938259--12938404	20	7.4	20	72	16	101	49	11	5	33	1.62
12938473--12938558	32	2.6	31	78	12	84	77	2	4	15	1.02
12945116--12945162	22	2.1	23	84	11	62	25	2	6	65	1.27
12950873--12951754	81	10.8	81	69	14	389	30	18	22	28	1.98
12951347--12951830	93	5.5	91	72	16	414	29	19	22	29	1.98
12951317--12951872	174	3.2	173	92	2	902	30	18	22	28	1.97
12953416--12953463	23	2.0	24	84	11	64	43	0	6	50	1.27
12955756--12955789	17	2.0	17	100	0	68	58	5	5	29	1.45
12955997--12956051	27	2.0	27	82	6	67	43	0	0	56	0.99
12963797--12963975	91	2.0	91	98	0	349	41	13	6	39	1.69
12972572--12972605	16	2.1	16	100	0	68	29	11	17	41	1.85
12973139--12973199	27	2.4	25	81	13	70	54	6	14	24	1.64
12973507--12973590	42	2.0	42	100	0	168	54	2	21	21	1.56
12976503--12976548	17	2.6	18	79	10	58	15	6	6	71	1.27
12976503--12976551	18	2.8	17	79	17	55	16	6	6	71	1.27
12976926--12976980	27	2.1	26	86	3	74	25	5	10	58	1.53
12979908--12979958	21	2.5	21	93	3	86	50	0	0	49	1.00
12979931--12979987	30	1.9	30	85	0	78	52	1	0	45	1.11
12981287--12981329	18	2.4	18	80	7	52	34	18	4	41	1.71
12986171--12986224	19	2.8	20	75	11	67	44	11	20	24	1.83
12991461--12991527	23	2.9	23	79	2	71	47	10	2	38	1.53
12991650--12991814	21	7.7	21	67	19	72	52	11	3	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12991636--12991725	38	2.4	38	87	5	121	46	12	6	34	1.67
12991686--12991807	45	2.7	45	85	2	145	54	11	3	31	1.52
12991730--12991814	21	3.9	21	72	20	75	56	11	2	29	1.48
12991731--12991860	68	1.9	66	82	7	161	51	11	5	31	1.60
12991991--12992132	45	3.2	44	79	3	140	40	14	9	35	1.77
12992037--12992132	44	2.2	45	88	1	140	42	12	8	36	1.73
12992156--12992245	21	4.3	21	76	5	83	32	20	18	28	1.96
12992317--12992382	20	3.3	20	86	0	96	34	18	16	30	1.93
12992300--12992428	40	3.2	40	73	6	118	30	17	18	34	1.94
12992387--12992448	20	3.1	20	83	0	88	25	11	22	40	1.87
12992292--12992468	40	4.4	40	75	2	115	29	15	18	36	1.92
12995574--12995608	18	1.9	18	88	0	52	60	11	0	28	1.32
12996553--12996617	33	1.9	33	84	3	85	64	0	6	29	1.17
12997023--12997064	13	3.4	13	74	12	52	76	7	2	14	1.10
12997018--12997064	24	2.0	24	100	0	94	74	8	4	12	1.19
12999237--12999501	137	1.9	136	81	6	313	30	7	8	53	1.58
13002697--13002730	17	2.0	17	94	0	59	38	38	0	23	1.55
13003530--13003566	20	2.0	20	84	10	51	48	0	43	8	1.32
13003918--13003975	25	2.3	24	82	11	64	63	1	3	31	1.21
13003964--13004003	20	2.0	21	90	5	64	72	5	5	17	1.21
13004154--13004234	24	3.3	24	75	13	76	69	1	3	25	1.13
13004504--13004694	87	2.2	85	80	8	199	49	26	2	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13007109--13007147	18	2.2	18	86	9	53	74	0	5	20	1.01
13011389--13011456	25	2.7	25	88	11	95	13	1	5	79	0.98
13011389--13011462	26	2.9	25	86	13	98	13	1	5	79	0.96
13011800--13011841	12	3.4	12	78	18	50	42	0	7	50	1.30
13016539--13016576	18	2.2	18	85	4	51	44	0	2	52	1.14
13018816--13018992	95	1.9	95	96	0	327	33	12	22	31	1.92
13019057--13019094	19	2.0	19	90	10	60	42	0	0	57	0.98
13019245--13019290	20	2.4	19	82	13	58	65	0	0	34	0.93
13019217--13019281	25	2.4	27	75	19	64	64	0	0	35	0.94
13028891--13028915	13	1.9	13	100	0	50	44	40	0	16	1.47
13031321--13031360	15	2.8	14	85	7	53	27	7	0	65	1.20
13038991--13039050	12	4.8	12	76	15	59	73	1	3	21	1.07
13039018--13039045	7	4.0	7	100	0	56	71	0	0	28	0.86
13038989--13039092	37	2.8	38	73	12	101	73	2	5	18	1.16
13046581--13046620	18	2.2	19	86	13	57	75	2	7	15	1.14
13046562--13046606	14	3.1	14	87	9	56	80	2	2	15	0.92
13046562--13046621	14	3.6	16	74	26	54	75	3	5	16	1.12
13047171--13047276	52	2.1	51	82	5	124	33	21	5	39	1.77
13053978--13054036	18	3.3	17	77	15	57	76	6	1	15	1.07
13053965--13054036	12	6.4	11	70	20	51	76	5	1	16	1.05
13053986--13054047	18	3.7	16	79	12	63	79	4	3	12	1.02
13062094--13062133	21	1.9	21	89	0	62	7	15	2	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13064132--13064183	16	3.2	16	75	0	59	51	1	5	40	1.37
13065131--13065176	3	15.3	3	100	0	92	67	0	0	32	0.91
13070618--13070691	31	2.4	30	95	2	130	18	2	32	45	1.64
13070705--13070750	20	2.3	20	96	0	83	10	0	43	45	1.39
13072227--13072499	144	1.9	144	87	5	401	42	13	12	31	1.81
13072227--13072558	144	2.3	143	82	7	395	42	13	12	31	1.82
13072227--13072597	144	2.6	142	80	5	381	40	13	13	32	1.84
13075705--13075794	46	2.0	46	81	0	108	18	22	3	55	1.57
13077055--13077199	51	2.8	51	82	1	164	36	14	9	39	1.79
13077616--13077870	122	2.1	121	81	5	309	47	14	20	17	1.82
13077782--13077888	34	3.2	32	72	7	90	49	14	21	14	1.79
13077790--13077947	65	2.4	65	83	6	185	50	12	20	16	1.78
13077670--13078006	186	1.8	187	81	1	426	48	14	20	17	1.81
13078098--13078221	65	1.9	64	86	4	178	47	10	24	17	1.79
13079394--13079440	11	4.3	11	86	7	69	2	8	0	89	0.57
13079394--13079438	23	2.0	23	90	0	72	2	8	0	88	0.58
13079300--13079499	77	2.6	75	82	11	216	12	13	7	67	1.41
13083102--13083221	52	2.3	52	81	4	145	37	19	6	36	1.78
13083394--13083496	41	2.5	41	84	6	136	21	9	16	52	1.72
13083391--13083683	40	7.5	40	68	16	168	24	10	16	48	1.77
13083873--13083908	12	3.0	12	100	0	72	50	25	8	16	1.73
13083947--13083981	3	11.3	3	87	6	52	28	0	2	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13084976--13085011	16	2.3	16	90	4	56	36	0	0	63	0.94
13089330--13089387	17	3.3	17	77	15	55	53	12	0	34	1.38
13090648--13090693	24	1.9	24	86	8	67	45	0	0	54	0.99
13104420--13104748	44	7.5	44	84	3	387	26	11	16	45	1.81
13104420--13104754	87	3.8	87	86	4	410	26	11	16	45	1.82
13104982--13105015	10	3.3	10	88	8	50	14	2	2	79	0.97
13106027--13106380	186	1.9	186	81	10	438	49	7	9	33	1.64
13108228--13108293	34	1.9	34	96	0	123	40	3	22	33	1.69
13114387--13114513	10	12.5	10	69	12	71	53	4	1	40	1.31
13114389--13114492	20	5.2	20	72	14	81	50	3	1	44	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100