genome.fa.s113.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  61  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14318167--14318599	179	2.4	178	79	4	417	26	21	31	20	1.98
14319756--14320547	296	2.7	295	74	6	739	29	22	28	19	1.98
14320344--14320970	296	2.1	296	79	4	654	31	22	26	19	1.98
14320941--14321122	92	2.0	92	86	2	258	29	24	30	15	1.96
14322854--14322888	18	1.9	18	94	0	61	34	11	31	22	1.90
14324950--14327131	296	7.4	292	74	6	1242	20	27	22	28	1.99
14324964--14327131	591	3.7	582	73	6	1625	20	27	22	28	1.99
14330756--14330844	45	2.0	44	86	2	124	25	32	19	22	1.97
14334916--14335660	295	2.5	295	76	6	686	19	27	23	30	1.98
14335086--14335632	296	1.9	295	80	6	642	19	27	23	29	1.98
14335939--14336264	179	1.8	178	81	2	402	18	28	23	29	1.97
14340882--14340981	45	2.2	45	85	0	128	22	34	22	22	1.97
14344437--14344831	179	2.2	178	80	4	431	19	26	21	32	1.97
14347602--14347706	45	2.3	45	83	3	122	24	31	20	23	1.98
14348405--14350840	296	8.2	295	72	7	692	19	27	23	29	1.98
14350256--14350846	295	2.0	296	80	4	656	19	26	24	30	1.98
14350514--14351258	412	1.8	412	79	3	881	20	27	23	28	1.99
14352182--14352645	253	1.8	253	80	2	565	20	29	21	28	1.98
14355765--14356034	118	2.3	118	78	3	294	21	29	22	25	1.99
14365172--14366008	298	2.8	296	77	5	744	19	26	23	29	1.98
14365619--14366285	295	2.2	297	80	5	717	19	27	24	28	1.98
14365726--14366419	295	2.4	294	76	8	665	18	26	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14373839--14373992	51	3.0	51	88	0	227	14	30	26	27	1.95
14386069--14387676	592	2.7	579	75	7	1447	19	27	22	29	1.98
14386694--14387754	296	3.6	295	75	4	864	21	28	21	28	1.99
14390422--14391050	295	2.1	297	79	4	637	19	25	24	31	1.98
14394067--14394711	296	2.2	292	78	4	661	18	28	22	30	1.97
14396589--14397082	265	1.9	264	80	4	591	20	27	24	27	1.99
14397339--14397434	49	2.0	48	80	13	108	13	29	23	33	1.93
14400812--14402401	295	5.4	292	74	5	940	20	28	23	28	1.99
14408966--14409493	283	1.9	283	79	3	605	30	22	26	20	1.98
14413052--14413753	296	2.4	295	76	7	693	27	23	28	19	1.98
14429583--14429985	180	2.2	180	82	4	456	31	23	28	17	1.97
14433511--14433616	45	2.4	45	79	3	124	20	18	33	27	1.96
14436142--14436689	295	1.9	294	80	5	649	28	21	28	20	1.99
14439592--14439678	45	1.9	45	85	0	120	26	18	31	24	1.98
14441597--14442465	296	2.9	293	74	4	765	29	23	27	20	1.99
14442385--14442701	117	2.7	116	79	0	301	25	23	27	23	2.00
14453231--14453325	45	2.1	45	82	0	109	22	21	30	26	1.98
14455715--14456442	297	2.5	293	78	6	700	29	20	27	21	1.98
14466108--14466141	13	2.6	13	85	0	50	38	32	20	8	1.84
14471651--14472005	179	2.0	179	79	3	383	32	24	27	15	1.95
14473821--14473918	45	2.2	45	83	0	124	24	25	28	21	1.99
14476888--14476914	13	2.1	13	100	0	54	29	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14486398--14486945	296	1.9	295	79	5	633	29	23	27	20	1.98
14489686--14489954	117	2.3	117	79	1	297	24	24	29	21	1.99
14490078--14490229	70	2.2	70	86	2	207	21	18	32	27	1.96
14495660--14495706	20	2.3	20	100	0	94	27	4	44	23	1.72
14502934--14503008	34	2.2	34	90	0	114	37	28	24	10	1.88
14503929--14503959	12	2.6	12	94	0	53	29	29	29	12	1.94
14506213--14506267	24	2.3	24	100	0	110	34	38	18	9	1.82
14526710--14528842	296	7.2	294	73	7	1017	29	22	27	20	1.99
14526402--14528732	296	7.9	293	72	8	812	29	22	27	20	1.99
14536837--14538147	295	4.5	292	74	6	910	28	21	28	21	1.99
14539330--14539481	82	1.9	82	81	0	187	30	23	25	21	1.98
14541189--14542413	370	3.3	370	95	0	2164	22	24	35	17	1.95
14542761--14543038	117	2.4	116	80	3	297	25	21	30	22	1.99
14563025--14563077	26	2.0	26	88	0	79	30	16	24	28	1.97
14563526--14563581	26	2.2	26	86	0	76	28	17	23	30	1.97
14564385--14564437	26	2.0	26	88	0	79	28	16	24	30	1.97
14564237--14564707	174	2.7	172	80	5	493	24	26	27	22	2.00
14563710--14565063	713	1.9	701	81	6	1630	24	27	26	20	1.99
14565784--14566055	148	1.8	148	81	0	337	23	29	28	19	1.98
14566115--14566488	197	1.9	197	84	2	509	21	25	28	24	1.99
14567337--14567657	171	1.9	171	80	3	378	23	31	24	19	1.98
14568036--14568087	26	2.0	26	96	0	95	26	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14569838--14570366	171	3.1	169	76	5	519	24	28	24	22	1.99
14574930--14575413	180	2.7	180	81	1	506	18	30	30	20	1.97
14574917--14575412	45	11.0	45	76	3	327	18	30	30	21	1.97
14584595--14584943	135	2.6	134	79	6	321	20	31	28	20	1.97
14584730--14585074	135	2.6	134	81	3	370	18	32	28	20	1.96
14584741--14585077	45	7.5	45	75	3	241	18	32	27	20	1.96
14584736--14585124	90	4.3	90	76	2	282	19	31	28	20	1.97
14585084--14585189	45	2.3	45	83	4	133	18	25	32	23	1.97
14585115--14585200	45	1.9	45	82	0	109	22	27	27	22	1.99
14587154--14587206	26	2.0	26	88	0	79	30	18	22	28	1.98
14588291--14588730	171	2.7	164	80	8	416	21	28	30	19	1.98
14588571--14588623	26	2.0	26	92	0	88	24	20	26	28	1.99
14588420--14588896	171	2.8	169	78	7	457	22	28	29	19	1.98
14592604--14592656	26	2.0	26	92	0	88	28	16	26	28	1.97
14592604--14592950	185	1.9	185	82	3	439	23	27	28	20	1.99
14593833--14593885	26	2.0	26	96	0	97	26	22	24	26	2.00
14593859--14594421	171	3.3	167	74	10	511	24	27	26	20	1.99
14595419--14595968	197	2.8	196	85	2	710	22	28	27	21	1.99
14600114--14600473	171	2.1	170	79	3	373	23	30	26	20	1.98
14601478--14601530	26	2.0	26	96	0	97	26	20	24	28	1.99
14600114--14602000	700	2.7	693	81	4	2149	23	28	26	21	1.99
14602886--14602938	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14606036--14606068	12	2.8	12	95	0	57	9	39	21	30	1.84
14608602--14608876	145	1.9	145	82	5	351	23	29	27	20	1.99
14608929--14609302	197	1.9	197	80	3	439	24	27	25	22	2.00
14610325--14610743	184	2.2	190	81	5	481	26	26	25	21	2.00
14611487--14612033	90	6.1	90	76	6	428	19	31	29	19	1.97
14611537--14612015	45	10.7	45	74	6	256	19	31	29	19	1.97
14611495--14611977	135	3.6	135	73	8	381	19	31	29	20	1.97
14611530--14612107	180	3.2	180	76	6	415	19	31	28	19	1.97
14617677--14617729	26	2.0	26	100	0	106	26	20	26	26	1.99
14619048--14619516	45	10.5	44	71	8	227	20	30	28	21	1.98
14619145--14619465	90	3.6	88	72	8	263	19	31	27	21	1.98
14627106--14627158	26	2.0	26	88	0	79	30	18	22	28	1.98
14628509--14628561	26	2.0	26	92	0	88	28	16	22	32	1.96
14628718--14629077	197	1.8	197	81	5	451	23	29	26	20	1.99
14629931--14629983	26	2.0	26	96	0	97	28	20	24	26	1.99
14631305--14631357	26	2.0	26	92	0	88	30	20	22	26	1.98
14631473--14631522	25	2.0	24	92	3	82	30	20	24	26	1.98
14631274--14631587	173	1.8	174	87	0	477	24	23	27	24	2.00
14631274--14631645	173	2.2	173	84	2	464	23	25	27	23	2.00
14632899--14632954	26	2.2	26	90	0	85	32	19	21	26	1.97
14633069--14633115	24	2.0	23	91	4	76	31	19	23	25	1.98
14632760--14633200	174	2.5	173	82	2	474	25	25	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14634496--14634549	26	2.1	26	92	0	90	27	18	25	27	1.98
14634485--14635358	458	1.9	458	87	1	1297	23	28	27	21	1.99
14636382--14636768	197	2.0	197	83	3	492	24	28	26	20	1.99
14637611--14637663	26	2.0	26	88	0	79	26	18	24	30	1.98
14639589--14639641	26	2.0	26	92	0	88	28	18	24	28	1.98
14640850--14641120	148	1.8	148	83	3	357	25	28	26	20	1.99
14641180--14641549	196	1.9	194	82	4	467	22	28	28	21	1.99
14642242--14642511	148	1.8	148	80	3	328	24	28	27	18	1.98
14642815--14642856	9	4.7	9	91	5	59	21	0	9	69	1.17
14642815--14642868	19	2.9	19	83	10	67	24	0	9	66	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100