genome.fa.s113.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  8  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1935548--1935584	18	2.1	18	89	0	56	62	0	0	37	0.96
1939360--1939403	20	2.1	21	87	4	63	43	29	11	15	1.82
1942431--1942491	24	2.5	24	92	5	88	55	0	0	44	0.99
1943681--1943752	29	2.5	29	77	4	74	37	4	0	58	1.18
1948976--1949008	15	2.2	15	94	0	57	72	0	15	12	1.12
1949514--1949552	13	3.0	13	80	0	51	48	0	0	51	1.00
1981632--1981679	21	2.3	22	78	10	55	18	12	2	66	1.33
1981640--1981683	21	2.1	21	86	0	61	15	11	2	70	1.26
1983789--1983827	20	2.0	20	100	0	78	35	20	28	15	1.93
1983855--1983886	14	2.3	14	100	0	64	28	31	9	31	1.88
1991208--1991247	20	2.0	20	85	9	55	22	0	5	72	1.04
1991394--1991436	21	2.0	23	86	9	63	23	0	2	74	0.93
1991402--1991443	22	1.9	22	85	9	59	26	0	2	71	0.98
1991398--1991446	22	2.3	21	80	16	57	24	0	2	73	0.94
2000826--2000867	22	1.9	22	100	0	84	33	26	9	30	1.88
2006884--2007111	114	2.0	114	94	0	402	25	18	21	33	1.97
2007493--2007581	46	1.9	46	90	4	144	41	15	16	25	1.88
2023544--2023580	6	6.3	6	87	6	58	35	0	0	64	0.94
2033533--2033658	64	2.0	63	89	3	191	27	19	17	35	1.94
2038388--2038453	24	2.8	24	80	11	66	48	0	0	51	1.00
2038484--2038535	14	3.8	14	82	5	61	40	0	0	59	0.97
2043883--2044054	86	2.0	86	96	0	317	39	8	16	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2044191--2044215	12	2.1	12	100	0	50	8	16	16	60	1.58
2050684--2050724	21	2.0	21	90	4	66	17	43	7	31	1.76
2054377--2054425	24	2.1	24	85	7	66	55	14	6	24	1.62
2056459--2056496	18	2.2	18	85	4	51	5	28	5	60	1.40
2060532--2060560	2	14.5	2	100	0	58	48	51	0	0	1.00
2071327--2071378	13	3.9	13	80	14	54	26	1	1	69	1.10
2071327--2071389	27	2.3	26	79	15	74	28	1	3	66	1.16
2071335--2071382	14	3.5	13	81	10	60	29	2	0	68	1.01
2071538--2071609	36	2.0	36	84	10	94	36	1	5	56	1.31
2071572--2071618	22	2.1	22	84	7	60	38	4	6	51	1.47
2071550--2071628	36	2.2	36	80	8	90	31	3	7	56	1.45
2072813--2072888	10	8.3	9	72	20	52	64	0	3	31	1.12
2072841--2072888	17	2.8	17	75	15	53	68	0	2	29	1.01
2073109--2073144	16	2.4	16	90	9	58	88	2	5	2	0.67
2078375--2078460	44	2.0	44	88	9	131	39	16	12	31	1.86
2089260--2089418	87	1.8	87	93	0	273	39	8	12	38	1.74
2089445--2089508	21	2.9	23	68	15	62	43	1	3	51	1.26
2089585--2089619	17	2.1	17	88	0	52	40	0	8	51	1.33
2091003--2091028	12	2.2	12	100	0	52	0	7	0	92	0.39
2091257--2091303	3	15.7	3	100	0	94	68	0	0	31	0.90
2091635--2091673	13	3.0	13	85	11	53	25	0	5	69	1.09
2092975--2093014	17	2.2	20	86	13	59	30	0	10	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2094725--2094755	2	15.5	2	100	0	62	51	0	0	48	1.00
2094755--2094788	2	17.0	2	100	0	68	50	0	50	0	1.00
2097100--2097129	3	10.0	3	100	0	60	33	33	33	0	1.58
2108613--2108639	11	2.5	11	100	0	54	0	18	37	44	1.50
2113266--2113312	23	2.1	22	84	11	60	53	4	0	42	1.20
2114630--2114671	20	2.1	20	90	0	66	35	2	0	61	1.09
2115491--2115540	6	8.7	6	91	4	68	16	4	0	80	0.87
2115482--2115537	24	2.4	24	88	11	82	19	5	0	75	1.00
2115490--2115540	18	3.0	17	86	8	77	17	3	0	78	0.90
2115548--2115727	57	3.1	57	80	9	197	43	6	11	38	1.66
2118965--2118998	15	2.3	15	89	0	50	29	23	0	47	1.52
2126219--2126265	11	4.1	12	78	18	55	76	0	14	8	1.01
2126230--2126259	15	2.0	15	93	0	51	83	0	10	6	0.81
2127251--2127594	44	7.9	44	78	4	349	24	12	18	44	1.85
2127252--2127592	86	3.9	86	79	9	322	24	12	18	44	1.84
2127273--2127584	130	2.4	131	86	2	439	24	12	18	44	1.85
2128613--2128666	27	2.0	27	85	7	74	29	1	0	68	1.00
2128685--2128717	5	6.4	5	93	6	57	18	0	0	81	0.68
2128726--2128973	57	4.3	58	80	6	247	47	6	9	35	1.62
2128840--2128879	15	2.5	15	88	8	53	50	2	0	47	1.14
2128746--2128968	118	1.9	117	85	4	306	47	6	10	35	1.65
2128860--2129060	102	2.0	101	83	6	255	46	8	11	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2129585--2129854	143	1.9	143	97	0	513	44	11	6	37	1.67
2129826--2130359	283	1.9	283	85	5	756	43	10	6	39	1.65
2135199--2135236	18	2.1	18	100	0	76	34	26	15	23	1.95
2153010--2153039	10	3.1	10	95	4	53	36	0	0	63	0.95
2153001--2153040	9	4.7	9	80	20	50	32	0	0	67	0.91
2162462--2162508	3	15.7	3	86	0	67	34	0	40	25	1.56
2167661--2167754	36	2.6	35	86	3	134	14	42	14	27	1.86
2167973--2168288	160	2.0	160	96	0	587	28	20	14	36	1.92
2178202--2178248	23	2.0	23	91	0	76	25	4	4	65	1.29
2187060--2187179	61	2.0	62	96	1	224	54	5	12	27	1.61
2195506--2195561	22	2.4	23	80	14	62	53	1	3	41	1.29
2197834--2197990	52	3.0	51	81	7	181	43	5	19	31	1.74
2198486--2198562	25	3.1	26	76	9	72	40	5	31	23	1.76
2198820--2198850	11	2.8	11	100	0	62	19	0	29	51	1.47
2198893--2199033	52	2.7	52	83	6	162	42	5	21	29	1.76
2209355--2209383	4	7.5	4	92	7	51	75	24	0	0	0.80
2213444--2213480	16	2.4	16	95	4	67	56	5	5	32	1.45
2217332--2217428	50	1.9	50	97	0	185	54	25	5	14	1.60
2217573--2217607	18	1.9	18	88	11	54	28	40	0	31	1.57
2232511--2232582	20	3.6	19	68	17	56	54	1	0	44	1.08
2232531--2232616	27	3.1	30	79	14	103	51	2	0	46	1.13
2232659--2232727	32	2.2	31	86	2	93	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2254323--2254368	23	2.0	24	87	12	69	39	0	0	60	0.97
2265843--2265876	17	1.9	18	88	5	52	32	2	0	64	1.08
2266278--2266343	29	2.3	29	73	5	71	46	1	4	46	1.32
2266280--2266344	28	2.3	29	75	2	78	46	1	4	47	1.32
2267561--2267593	10	3.0	11	83	16	50	48	0	0	51	1.00
2268144--2268185	20	2.1	20	86	0	57	47	0	2	50	1.14
2269750--2269836	28	3.0	27	77	12	86	49	0	0	50	1.00
2269896--2269939	21	2.1	21	86	0	61	47	0	0	52	1.00
2271989--2272139	33	4.7	33	85	2	155	55	10	33	0	1.39
2271985--2272092	15	6.8	15	68	12	63	54	11	33	0	1.42
2272037--2272128	18	5.4	18	70	15	79	54	10	33	1	1.43
2272033--2272149	15	7.5	15	74	12	85	57	8	33	0	1.35
2273843--2273881	4	9.5	4	88	5	51	71	5	0	23	1.05
2274898--2275180	87	3.3	85	75	12	263	44	13	12	29	1.81
2274898--2275183	44	6.6	44	78	11	236	44	14	12	29	1.81
2275464--2275532	33	2.1	32	84	7	86	37	15	15	30	1.90
2276534--2276605	15	4.6	14	72	24	56	19	5	0	75	1.00
2276530--2276616	38	2.3	39	81	15	103	20	5	1	72	1.12
2282552--2282583	6	5.7	6	92	7	50	18	0	0	81	0.70
2282552--2282583	16	1.9	17	93	6	57	18	0	0	81	0.70
2282612--2282645	13	2.6	13	85	0	50	32	2	0	64	1.08
2282735--2283124	174	2.2	177	81	6	456	37	10	7	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2283279--2283319	9	4.4	10	82	14	52	80	0	2	17	0.82
2283279--2283319	5	8.8	5	84	10	52	80	0	2	17	0.82
2283564--2283605	20	2.2	19	91	4	66	0	45	0	54	0.99
2283899--2283946	24	2.0	24	84	4	62	4	12	14	68	1.34
2284556--2284843	120	2.4	119	91	4	447	33	14	7	44	1.73
2284554--2284834	59	4.7	59	87	8	394	33	14	7	43	1.74
2285389--2285459	31	2.3	31	85	0	88	26	21	25	26	1.99
2285915--2285960	18	2.4	19	82	7	58	76	0	0	23	0.79
2285913--2285967	19	2.9	19	81	10	60	74	0	1	23	0.91
2287767--2287794	14	2.0	14	100	0	56	42	14	7	35	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100