genome.fa.s113.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  50  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12137527--12137556	2	15.0	2	100	0	60	50	0	0	50	1.00
12138050--12138102	22	2.4	22	87	6	72	64	1	3	30	1.22
12143548--12143586	17	2.3	17	90	0	60	41	5	0	53	1.23
12144639--12144700	16	3.7	17	74	18	67	64	1	12	20	1.36
12147227--12147284	31	1.9	31	85	3	82	43	18	8	29	1.80
12147805--12147861	26	2.2	25	79	14	62	66	0	10	22	1.22
12147828--12147860	16	2.0	17	94	5	59	66	0	9	24	1.20
12147807--12147893	12	8.5	10	70	22	56	62	0	14	22	1.32
12150022--12150070	15	3.1	15	79	8	53	4	12	10	73	1.22
12150027--12150073	6	8.3	6	81	13	55	4	14	10	70	1.31
12150039--12150096	18	3.2	18	82	4	73	10	17	6	65	1.44
12150098--12150166	9	7.4	9	88	4	102	1	14	0	84	0.70
12150098--12150163	19	3.5	19	89	4	98	1	15	0	83	0.72
12150098--12150166	28	2.5	28	92	0	111	1	14	0	84	0.70
12153421--12153465	3	15.0	3	100	0	90	66	0	0	33	0.92
12154268--12154326	29	2.0	29	93	6	102	38	16	13	30	1.88
12156599--12156696	49	2.0	49	91	0	160	38	20	8	32	1.82
12159766--12159799	16	2.1	17	88	5	52	50	0	0	50	1.00
12162091--12162125	13	2.7	13	86	0	52	82	0	2	14	0.77
12162091--12162124	15	2.3	15	90	5	52	85	0	2	11	0.71
12168566--12168611	12	3.8	12	88	0	74	36	39	4	19	1.72
12168568--12168614	24	2.0	24	100	0	94	38	38	4	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12169590--12170000	221	1.9	221	84	2	565	37	11	15	35	1.83
12171046--12171105	29	2.1	29	100	0	120	23	10	15	51	1.72
12175841--12175887	15	3.1	15	87	3	67	12	12	8	65	1.46
12175969--12176037	21	3.2	21	74	12	68	50	4	1	43	1.30
12177140--12177212	16	4.6	16	77	6	78	24	0	8	67	1.18
12177643--12177695	26	2.1	25	82	6	63	39	5	16	37	1.73
12178244--12178327	29	3.1	25	77	12	69	17	5	4	71	1.24
12178298--12178353	10	5.9	9	77	10	58	17	3	0	78	0.89
12178295--12178353	19	3.3	18	79	13	68	18	3	0	77	0.90
12178369--12178729	60	6.0	60	88	4	523	45	8	12	33	1.72
12183853--12183893	20	2.2	19	86	8	57	43	7	0	48	1.30
12184946--12185007	16	3.7	17	74	18	67	64	1	12	20	1.36
12187372--12187416	23	2.0	23	82	8	56	8	31	8	51	1.64
12188090--12188146	26	2.2	25	79	14	62	66	0	10	22	1.22
12188113--12188145	16	2.0	17	94	5	59	66	0	9	24	1.20
12188092--12188178	12	8.5	10	70	22	56	62	0	14	22	1.32
12189070--12189108	20	2.0	20	89	0	60	61	7	5	25	1.44
12194450--12194503	16	3.6	16	66	19	53	12	16	12	57	1.65
12195692--12195785	49	1.9	49	93	0	161	38	22	8	30	1.84
12200487--12200764	60	4.4	61	74	16	240	47	5	10	36	1.63
12200552--12200597	18	2.5	19	82	7	67	43	10	4	41	1.59
12200456--12200712	135	1.9	136	86	0	372	48	6	9	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12200513--12200662	75	2.0	77	85	6	207	48	6	8	37	1.57
12200578--12200764	60	3.2	59	86	6	263	46	4	11	37	1.59
12213131--12213529	221	1.8	221	84	4	554	36	12	16	35	1.85
12214942--12215548	292	2.1	295	91	3	976	33	14	17	34	1.90
12226156--12226215	28	2.3	24	78	15	66	68	0	10	21	1.19
12226158--12226237	22	3.9	22	76	18	82	63	0	12	23	1.28
12226179--12226210	16	1.9	17	93	6	57	71	0	9	18	1.12
12226158--12226235	10	7.8	10	71	21	56	64	0	12	23	1.28
12226156--12226241	38	2.2	36	80	13	100	65	0	11	23	1.25
12227505--12227795	143	2.0	142	98	0	564	38	7	10	43	1.68
12229402--12229459	30	1.9	30	83	13	75	22	0	29	48	1.51
12229431--12229461	16	1.9	16	93	0	53	19	0	35	45	1.51
12229419--12229491	37	2.0	37	86	5	105	17	0	34	47	1.48
12229478--12229670	16	12.2	16	71	10	101	18	1	32	47	1.58
12229541--12229670	17	8.0	16	75	9	75	16	1	33	48	1.55
12229949--12229978	3	10.0	3	100	0	60	33	0	0	66	0.92
12231122--12231169	13	3.6	14	80	8	55	6	22	0	70	1.09
12231126--12231170	14	3.3	14	84	3	56	4	20	0	75	0.97
12231529--12231574	23	2.0	23	91	0	74	30	21	21	26	1.99
12231416--12232022	110	5.5	110	85	3	767	37	18	20	23	1.95
12231416--12232265	221	3.8	220	82	7	924	37	18	20	23	1.94
12231867--12231912	23	2.0	23	91	0	74	26	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12231871--12232155	133	2.1	132	88	1	426	36	18	21	24	1.95
12231996--12232045	23	2.2	23	92	0	82	30	20	22	28	1.98
12232000--12232265	110	2.4	110	87	3	383	36	18	21	24	1.95
12232820--12233150	65	5.1	66	81	2	355	32	16	22	29	1.95
12232835--12233151	33	9.7	32	81	6	316	32	15	22	28	1.95
12240934--12240985	14	3.6	14	80	12	52	19	0	28	51	1.47
12240947--12241089	16	9.2	16	67	19	54	21	2	25	49	1.63
12240874--12240981	51	2.1	51	81	6	121	16	0	35	48	1.47
12240926--12240985	14	4.1	14	73	12	50	16	0	31	51	1.45
12240912--12241016	44	2.4	44	82	4	115	19	0	31	48	1.55
12241002--12241089	16	5.5	16	78	16	76	20	3	26	50	1.64
12241014--12241063	15	3.3	15	88	2	64	20	6	20	54	1.65
12242626--12242652	3	9.0	3	100	0	54	33	0	0	66	0.92
12250336--12250488	49	3.1	47	75	8	146	48	30	1	19	1.60
12250353--12250486	16	8.2	16	74	8	119	50	30	1	17	1.55
12250562--12250622	16	4.0	15	77	10	61	45	31	0	22	1.53
12250532--12250604	37	2.0	35	86	5	101	47	34	0	17	1.48
12252230--12252519	142	2.0	142	99	0	571	43	11	7	38	1.68
12253773--12253798	3	8.7	3	100	0	52	30	0	0	69	0.89
12264603--12265169	291	1.9	291	93	0	974	32	17	14	34	1.91
12267783--12267937	84	1.8	84	82	5	197	24	9	23	41	1.84
12273328--12273377	18	2.9	18	80	8	61	68	10	16	6	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12273417--12273451	8	4.5	8	89	7	54	82	0	17	0	0.66
12273417--12273452	15	2.3	16	90	9	65	80	0	19	0	0.71
12274642--12274680	20	2.0	20	84	0	51	23	5	10	61	1.48
12275571--12275657	12	8.5	10	70	20	56	22	14	0	62	1.32
12275604--12275636	16	2.0	17	94	5	59	24	9	0	66	1.20
12275603--12275659	26	2.2	26	81	12	64	22	10	0	66	1.22
12278786--12278817	16	1.9	17	93	6	57	18	9	0	71	1.12
12281033--12281061	12	2.3	13	94	5	51	0	24	0	75	0.80
12293879--12294196	60	5.4	60	85	3	412	35	11	6	47	1.65
12293874--12294227	117	3.0	116	82	7	414	35	10	7	47	1.65
12295539--12295695	52	3.0	52	85	0	215	26	24	8	40	1.83
12295987--12296081	50	1.9	50	84	0	127	21	28	8	42	1.82
12295980--12296083	25	4.2	25	75	7	86	19	30	7	42	1.79
12296610--12296754	52	2.8	52	88	2	204	26	25	7	40	1.82
12296787--12296827	11	3.7	11	93	0	64	53	31	0	14	1.41
12300732--12300828	48	2.0	49	93	2	169	30	8	22	38	1.84
12302004--12302045	16	2.6	17	74	11	52	54	7	21	16	1.65
12303056--12303113	28	2.0	29	90	9	93	31	13	17	37	1.89
12309073--12309123	25	2.1	25	78	10	61	21	13	1	62	1.40
12309116--12309147	16	1.9	17	93	6	57	18	9	0	71	1.12
12309091--12309158	16	4.1	16	67	20	50	20	13	1	64	1.35
12320892--12320947	29	1.9	29	92	7	96	35	17	16	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12323209--12323307	50	2.0	50	94	2	173	38	22	8	31	1.83
12327176--12327207	11	2.9	11	90	0	55	15	0	31	53	1.43
12327232--12327387	52	3.0	52	86	0	204	41	8	23	26	1.83
12327926--12328024	25	4.0	25	76	2	92	42	7	29	21	1.79
12327921--12328015	50	1.9	50	84	0	127	42	8	28	21	1.82
12328259--12328290	11	2.9	11	90	0	55	15	0	31	53	1.43
12328314--12328470	52	3.0	52	86	1	217	38	8	24	27	1.85
12329019--12329067	25	2.0	25	87	0	71	42	4	28	24	1.73
12329029--12329077	25	2.0	25	83	0	62	48	6	22	22	1.72
12329387--12329542	52	3.0	52	84	3	199	39	8	25	26	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100